Gert Hulselmans

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 7

Top Topics

Network Analysis

Top Venues

Nature protocols

Nature genetics

Nature cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Nelson J Johansen, Niklas Kempynck, Nathan R Zemke, Saroja Somasundaram, Seppe De Winter, Marcus J Hooper, Deepanjali Dwivedi, Ruchi Lohia, Fabien Wehbe, Bocheng Li, Darina Abaffyová, Ethan J Armand, Julie De Man, Eren Can Eksi, Nikolai Hecker, Gert Hulselmans, Vasileios Konstantakos, David Mauduit, John K Mich, Gabriele Partel, Tanya L Daigle, Boaz P Levi, Kai Zhang, Yoshiaki Tanaka, Jonathan M Werner, Jonathan T Ting, Yoav Ben-Simon, Jeremy A Miller, Joseph R Ecker, Bing Ren, Stein Aerts, Ed S Lein, Bosiljka Tasic, Trygve E Bakken
Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex. bioRxiv : the preprint server for biology (2024)
Carmen Bravo Gonzalez-Blas, Xiao-Jiang Quan, Ramon Duran-Romaña, Ibrahim Ihsan Taskiran, Duygu Koldere, Kristofer Davie, Valerie Christiaens, Samira Makhzami, Gert Hulselmans, Maxime De Waegeneer, David Mauduit, Suresh Poovathingal, Sara Aibar, Stein Aerts
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics. Molecular systems biology 16 (5) (2021)
Jasper Wouters, Zeynep Kalender-Atak, Liesbeth Minnoye, Katina I Spanier, Maxime De Waegeneer, Carmen Bravo González-Blas, David Mauduit, Kristofer Davie, Gert Hulselmans, Ahmad Najem, Michael Dewaele, Dennis Pedri, Florian Rambow, Samira Makhzami, Valerie Christiaens, Frederik Ceyssens, Ghanem Ghanem, Jean-Christophe Marine, Suresh Poovathingal, Stein Aerts
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma. Nature cell biology 22 (8) (2020)
Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, Quentin Rouchon, Toni Verbeiren, Dries De Maeyer, Joke Reumers, Yvan Saeys, Stein Aerts
A scalable SCENIC workflow for single-cell gene regulatory network analysis. Nature protocols 15 (7) (2020)
Carmen Bravo Gonzalez-Blas, Liesbeth Minnoye, Dafni Papasokrati, Sara Aibar, Gert Hulselmans, Valerie Christiaens, Kristofer Davie, Jasper Wouters, Stein Aerts
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data. Nature methods 16 (5) (2019)
Jelle Jacobs, Mardelle Atkins, Kristofer Davie, Hana Imrichova, Lucia Romanelli, Valerie Christiaens, Gert Hulselmans, Delphine Potier, Jasper Wouters, Ibrahim Ihsan Taskiran, Giulia Paciello, Carmen B González-Blas, Duygu Koldere, Sara Aibar, Georg Halder, Stein Aerts
The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes. Nature genetics 50 (7) (2018)
Sara Aibar, Carmen Bravo Gonzalez-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts, Joost van den Oord, Zeynep Kalender Atak, Jasper Wouters, Stein Aerts
SCENIC: single-cell regulatory network inference and clustering. Nature methods 14 (11) (2017)