Kai Zhang

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 30

Top Venues

Nature methods

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

Ludwig Institute for Cancer Research San Diego Branch

University of California San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Ludwig Institute for Cancer Research San Diego Branch May 01 2019

United States

Postdoctoral fellow

University of California San Diego Sep 13 2018 - May 01 2019

United States

Postdoctoral fellow :: Chemistry and Biochemistry

Education History

University of California San Diego Sep 24 2012 - Aug 20 2018

United States

PHD :: Bioinformatics and Systems Biology

Xiamen University Sep 14 2009 - Jul 01 2012

China

MSC :: Biochemistry and Molecular Biology

Xiamen University Sep 17 2005 - Jul 01 2009

China

BSC

Publications

Harris S Kaplan, Brandon L Logeman, Kai Zhang, Celine Santiago, Noor Sohail, Serhiy Naumenko, Shannan J Ho Sui, David D Ginty, Bing Ren, Catherine Dulac
Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development. bioRxiv : the preprint server for biology (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods 21 (2) (2024)
Harris S Kaplan, Brandon L Logeman, Kai Zhang, Celine Santiago, Noor Sohail, Serhiy Naumenko, Shannan J Ho Sui, David D Ginty, Bing Ren, Catherine Dulac
Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development. bioRxiv : the preprint server for biology (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods (2024)
Harris S Kaplan, Brandon L Logeman, Kai Zhang, Celine Santiago, Noor Sohail, Serhiy Naumenko, Shannan J Ho Sui, David D Ginty, Bing Ren, Catherine Dulac
Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development. bioRxiv : the preprint server for biology (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods (2024)
Harris S Kaplan, Brandon L Logeman, Kai Zhang, Celine Santiago, Noor Sohail, Serhiy Naumenko, Shannan J Ho Sui, David D Ginty, Bing Ren, Catherine Dulac
Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development. bioRxiv : the preprint server for biology (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods (2024)
Nelson J Johansen, Niklas Kempynck, Nathan R Zemke, Saroja Somasundaram, Seppe De Winter, Marcus J Hooper, Deepanjali Dwivedi, Ruchi Lohia, Fabien Wehbe, Bocheng Li, Darina Abaffyová, Ethan J Armand, Julie De Man, Eren Can Eksi, Nikolai Hecker, Gert Hulselmans, Vasileios Konstantakos, David Mauduit, John K Mich, Gabriele Partel, Tanya L Daigle, Boaz P Levi, Kai Zhang, Yoshiaki Tanaka, Jonathan M Werner, Jonathan T Ting, Yoav Ben-Simon, Jeremy A Miller, Joseph R Ecker, Bing Ren, Stein Aerts, Ed S Lein, Bosiljka Tasic, Trygve E Bakken
Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex. bioRxiv : the preprint server for biology (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods 21 (2) (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods 21 (2) (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods 21 (2) (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods 21 (2) (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods (2024)
Kai Zhang, Nathan R Zemke, Ethan J Armand, Bing Ren
A fast, scalable and versatile tool for analysis of single-cell omics data. Nature methods 21 (2) (2024)
Songpeng Zu, Yang Eric Li, Kangli Wang, Ethan J Armand, Sainath Mamde, Maria Luisa Amaral, Yuelai Wang, Andre Chu, Yang Xie, Michael Miller, Jie Xu, Zhaoning Wang, Kai Zhang, Bojing Jia, Xiaomeng Hou, Lin Lin, Qian Yang, Seoyeon Lee, Bin Li, Samantha Kuan, Hanqing Liu, Jingtian Zhou, António Pinto-Duarte, Jacinta Lucero, Julia Osteen, Michael Nunn, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Zihan Wang, Jingbo Shang, M Margarita Behrens, Joseph R Ecker, Allen Wang, Sebastian Preissl, Bing Ren
Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature 624 (7991) (2023)
Ramya Raviram, Anugraha Raman, Sebastian Preissl, Jiangfang Ning, Shaoping Wu, Tomoyuki Koga, Kai Zhang, Cameron W Brennan, Chenxu Zhu, Jens Luebeck, Kinsey Van Deynze, Jee Yun Han, Xiaomeng Hou, Zhen Ye, Anna K Mischel, Yang Eric Li, Rongxin Fang, Tomas Baback, Joshua Mugford, Claudia Z Han, Christopher K Glass, Cathy L Barr, Paul S Mischel, Vineet Bafna, Laure Escoubet, Bing Ren, Clark C Chen
Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Ramya Raviram, Anugraha Raman, Sebastian Preissl, Jiangfang Ning, Shaoping Wu, Tomoyuki Koga, Kai Zhang, Cameron W Brennan, Chenxu Zhu, Jens Luebeck, Kinsey Van Deynze, Jee Yun Han, Xiaomeng Hou, Zhen Ye, Anna K Mischel, Yang Eric Li, Rongxin Fang, Tomas Baback, Joshua Mugford, Claudia Z Han, Christopher K Glass, Cathy L Barr, Paul S Mischel, Vineet Bafna, Laure Escoubet, Bing Ren, Clark C Chen
Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Ramya Raviram, Anugraha Raman, Sebastian Preissl, Jiangfang Ning, Shaoping Wu, Tomoyuki Koga, Kai Zhang, Cameron W Brennan, Chenxu Zhu, Jens Luebeck, Kinsey Van Deynze, Jee Yun Han, Xiaomeng Hou, Zhen Ye, Anna K Mischel, Yang Eric Li, Rongxin Fang, Tomas Baback, Joshua Mugford, Claudia Z Han, Christopher K Glass, Cathy L Barr, Paul S Mischel, Vineet Bafna, Laure Escoubet, Bing Ren, Clark C Chen
Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Ramya Raviram, Anugraha Raman, Sebastian Preissl, Jiangfang Ning, Shaoping Wu, Tomoyuki Koga, Kai Zhang, Cameron W Brennan, Chenxu Zhu, Jens Luebeck, Kinsey Van Deynze, Jee Yun Han, Xiaomeng Hou, Zhen Ye, Anna K Mischel, Yang Eric Li, Rongxin Fang, Tomas Baback, Joshua Mugford, Claudia Z Han, Christopher K Glass, Cathy L Barr, Paul S Mischel, Vineet Bafna, Laure Escoubet, Bing Ren, Clark C Chen
Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proceedings of the National Academy of Sciences of the United States of America 120 (20) (2023)
Rongxin Fang, Sebastian Preissl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K Shiau, Xinzhu Zhou, Fangming Xie, Eran A Mukamel, Kai Zhang, Yanxiao Zhang, M Margarita Behrens, Joseph R Ecker, Bing Ren
Comprehensive analysis of single cell ATAC-seq data with SnapATAC. Nature communications 12 (1) (2021)
James D Hocker, Olivier B Poirion, Fugui Zhu, Justin Buchanan, Kai Zhang, Joshua Chiou, Tsui-Min Wang, Qingquan Zhang, Xiaomeng Hou, Yang Eric Li, Yanxiao Zhang, Elie N Farah, Allen Wang, Andrew D McCulloch, Kyle J Gaulton, Bing Ren, Neil C Chi, Sebastian Preissl
Cardiac cell type-specific gene regulatory programs and disease risk association. Science advances 7 (20) (2021)
Mengchi Wang, David Wang, Kai Zhang, Vu Ngo, Shicai Fan, Wei Wang
Motto: Representing Motifs in Consensus Sequences with Minimum Information Loss. Genetics 216 (2) (2020)
Kai Zhang, Mengchi Wang, Ying Zhao, Wei Wang
Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development. Science advances 5 (3) (2019)
Shicai Fan, Jianxiong Tang, Nan Li, Ying Zhao, Rizi Ai, Kai Zhang, Mengchi Wang, Wei Du, Wei Wang
Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers. NPJ genomic medicine 4 (2019)
Richard I Ainsworth, Rizi Ai, Bo Ding, Nan Li, Kai Zhang, Wei Wang
Bayesian Networks Predict Neuronal Transdifferentiation. G3 (Bethesda, Md.) 8 (7) (2018)
Bingfei Yu, Kai Zhang, J Justin Milner, Clara Toma, Runqiang Chen, James P Scott-Browne, Renata M Pereira, Shane Crotty, John T Chang, Matthew E Pipkin, Wei Wang, Ananda W Goldrath
Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation. Nature immunology 18 (5) (2017)
Yun Zhu, Zhao Chen, Kai Zhang, Mengchi Wang, David Medovoy, John W Whitaker, Bo Ding, Nan Li, Lina Zheng, Wei Wang
Constructing 3D interaction maps from 1D epigenomes. Nature communications 7 (2016)
Kai Zhang, Nan Li, Richard I Ainsworth, Wei Wang
Systematic identification of protein combinations mediating chromatin looping. Nature communications 7 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kai Zhang