Stein Aerts (S Aerts)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 39

Top Venues

Science (New York, N.Y.)

Nature cell biology

Nature reviews. Methods primers

Nature

KU Leuven

Katholieke Universiteit Leuven (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

KU Leuven Oct 01 2017

Belgium

Professor

VIB Oct 01 2016

Belgium

Group Leader :: Center for Brain and Disease Research

KU Leuven Oct 01 2014

Belgium

Associate Professor

KU Leuven

Belgium

Assistant Professor

Vlaams Instituut voor Biotechnologie

Belgium

Postdoc

IBDM

France

Visiting Postdoc

Data4S

Belgium

Bioinformatics Consultant

Janssen Pharmaceutica

Belgium

Assistant IT Project Leader

Education History

Katholieke Universiteit Leuven

Belgium

PHD :: Department of Electrical Engineering

Publications

Carmen Bravo Gonzalez-Blas, Irina Matetovici, Hanne Hillen, Ibrahim Ihsan Taskiran, Roel Vandepoel, Valerie Christiaens, Leticia Sansores-García, Elisabeth Verboven, Gert Hulselmans, Suresh Poovathingal, Jonas Demeulemeester, Nikoleta Psatha, David Mauduit, Georg Halder, Stein Aerts
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation. Nature cell biology 26 (1) (2024)
Carmen Bravo Gonzalez-Blas, Irina Matetovici, Hanne Hillen, Ibrahim Ihsan Taskiran, Roel Vandepoel, Valerie Christiaens, Leticia Sansores-García, Elisabeth Verboven, Gert Hulselmans, Suresh Poovathingal, Jonas Demeulemeester, Nikoleta Psatha, David Mauduit, Georg Halder, Stein Aerts
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation. Nature cell biology 26 (1) (2024)
Carmen Bravo Gonzalez-Blas, Irina Matetovici, Hanne Hillen, Ibrahim Ihsan Taskiran, Roel Vandepoel, Valerie Christiaens, Leticia Sansores-García, Elisabeth Verboven, Gert Hulselmans, Suresh Poovathingal, Jonas Demeulemeester, Nikoleta Psatha, David Mauduit, Georg Halder, Stein Aerts
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation. Nature cell biology 26 (1) (2024)
Carmen Bravo Gonzalez-Blas, Irina Matetovici, Hanne Hillen, Ibrahim Ihsan Taskiran, Roel Vandepoel, Valerie Christiaens, Leticia Sansores-García, Elisabeth Verboven, Gert Hulselmans, Suresh Poovathingal, Jonas Demeulemeester, Nikoleta Psatha, David Mauduit, Georg Halder, Stein Aerts
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation. Nature cell biology (2024)
Carmen Bravo Gonzalez-Blas, Irina Matetovici, Hanne Hillen, Ibrahim Ihsan Taskiran, Roel Vandepoel, Valerie Christiaens, Leticia Sansores-García, Elisabeth Verboven, Gert Hulselmans, Suresh Poovathingal, Jonas Demeulemeester, Nikoleta Psatha, David Mauduit, Georg Halder, Stein Aerts
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation. Nature cell biology 26 (1) (2024)
Nelson J Johansen, Niklas Kempynck, Nathan R Zemke, Saroja Somasundaram, Seppe De Winter, Marcus J Hooper, Deepanjali Dwivedi, Ruchi Lohia, Fabien Wehbe, Bocheng Li, Darina Abaffyová, Ethan J Armand, Julie De Man, Eren Can Eksi, Nikolai Hecker, Gert Hulselmans, Vasileios Konstantakos, David Mauduit, John K Mich, Gabriele Partel, Tanya L Daigle, Boaz P Levi, Kai Zhang, Yoshiaki Tanaka, Jonathan M Werner, Jonathan T Ting, Yoav Ben-Simon, Jeremy A Miller, Joseph R Ecker, Bing Ren, Stein Aerts, Ed S Lein, Bosiljka Tasic, Trygve E Bakken
Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex. bioRxiv : the preprint server for biology (2024)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne Classen, Stein Aerts
Shared enhancer gene regulatory networks between wound and oncogenic programs. eLife 12 (2023)
Carmen Bravo González-Blas, Seppe De Winter, Gert Hulselmans, Nikolai Hecker, Irina Matetovici, Valerie Christiaens, Suresh Poovathingal, Jasper Wouters, Sara Aibar, Stein Aerts
SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks. Nature methods (2023)
Iryna Mohylyak, Mercedes Bengochea, Carlos Pascual-Caro, Noemi Asfogo, Sara Fonseca-Topp, Natasha Danda, Zeynep Kalender Atak, Maxime De Waegeneer, Pierre-Yves Plaçais, Thomas Préat, Stein Aerts, Olga Corti, Jaime de Juan-Sanz, Bassem A Hassan
Developmental transcriptional control of mitochondrial homeostasis is required for activity-dependent synaptic connectivity. bioRxiv : the preprint server for biology (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Florian V De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González-Blas, Domenica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt-Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M Duarte, Rojesh Shrestha, S Tansu Bagdatli, M Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B Meyer, Ryan M Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille Lucie Germaine Lambert, Marta Iglesias, Sebastián R Najle, Zain Y Dossani, Luciano G Martelotto, Zachary Daniel Burkett, Ronald Lebofsky, José Ignacio Martin-Subero, Satish Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A Teichmann, Leif S Ludwig, Theodore P Braun, Andrew C Adey, William J Greenleaf, Jason D Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn
Systematic benchmarking of single-cell ATAC-sequencing protocols. Nature biotechnology (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Ibrahim Ihsan Taskiran, Katina I Spanier, Hannah Dickmänken, Niklas Kempynck, Alexandra Pančíková, Eren Can Eksi, Gert Hulselmans, Joy N Ismail, Koen Theunis, Roel Vandepoel, Valerie Christiaens, David Mauduit, Stein Aerts
Cell type directed design of synthetic enhancers. Nature (2023)
Florian V De Rop, Joy N Ismail, Carmen Bravo González-Blas, Gert J Hulselmans, Christopher Campbell Flerin, Jasper Janssens, Koen Theunis, Valerie M Christiaens, Jasper Wouters, Gabriele Marcassa, Joris de Wit, Suresh Poovathingal, Stein Aerts
Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads. eLife 11 (2022)
Ruth Styfhals, Grygoriy Zolotarov, Gert Hulselmans, Katina I Spanier, Suresh Poovathingal, Ali Murat Elagoz, Seppe De Winter, Astrid Deryckere, Nikolaus Rajewsky, Giovanna Ponte, Graziano Fiorito, Stein Aerts, Eve Seuntjens
Cell type diversity in a developing octopus brain. Nature communications 13 (1) (2022)
Weronika Kowalczyk, L Romanelli, Mardelle Atkins, Hanne Hillen, Carmen Bravo Gonzalez-Blas, Jelle Jacobs, Jun Xie, Soheil Soheily, Elisabeth Verboven, Iván M Moya, Stefaan Verhulst, Maxime De Waegeneer, Leticia Sansores-García, L van Huffel, Randy L Johnson, Leo A van Grunsven, Stein Aerts, Georg A Halder
Hippo signaling instructs ectopic but not normal organ growth. Science (New York, N.Y.) 378 (6621) (2022)
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Vincent Gardeux, Wouter Saelens, Fabrice P A David, Maria Brbic, Katina I Spanier, Jure Leskovec, Colleen N McLaughlin, Qijing Xie, Robert C Jones, Katja Brueckner, Jiwon Shim, Sudhir Gopal Tattikota, Frank Schnorrer, Katja Rust, Rebecca P Kim-Yip, Zita Carvalho-Santos, Carlos Ribeiro, Soumitra Pal, Sharvani Mahadevaraju, Teresa M Przytycka, Aaron M Allen, Stephen F Goodwin, Cameron W Berry, Margaret T Fuller, Helen White-Cooper, Erika L Matunis, Stephen DiNardo, Anthony Galenza, Lucy Erin O'Brien, Julian A T Dow, null null, Heinrich Jasper, Brian Oliver, Norbert Perrimon, Bart Deplancke, Stephen R Quake, Liqun Luo, Stein Aerts, Devika Agarwal, Yasir Ahmed-Braimah, Michelle Arbeitman, Majd M Ariss, Jordan Augsburger, Kumar Ayush, Catherine C Baker, Torsten Banisch, Katja Birker, Rolf Bodmer, Benjamin Bolival, Susanna E Brantley, Julie A Brill, Nora C Brown, Norene A Buehner, Xiaoyu Tracy Cai, Rita Cardoso-Figueiredo, Fernando Casares, Amy Chang, Thomas R Clandinin, Sheela Crasta, Claude Desplan, Angela M Detweiler, Darshan B Dhakan, Erika Donà, Stefanie Engert, Swann Floc'hlay, Nancy George, Amanda J González-Segarra, Andrew K Groves, Samantha Gumbin, Yanmeng Guo, Devon E Harris, Yael Heifetz, Stephen L Holtz, Felix Horns, Bruno Hudry, Ruei-Jiun Hung, Yuh Nung Jan, Jacob S Jaszczak, Gregory S X E Jefferis, Jim Karkanias, Timothy L Karr, Nadja Sandra Katheder, James Kezos, Anna A Kim, Seung K Kim, Lutz Kockel, Nikolaos Konstantinides, Thomas B Kornberg, Henry M Krause, Andrew Thomas Labott, Meghan Laturney, Ruth Lehmann, Sarah Leinwand, Jiefu Li, Joshua Shing Shun Li, Kai Li, Ke Li, Liying Li, Tun Li, Maria Litovchenko, Han-Hsuan Liu, Yifang Liu, Tzu-Chiao Lu, Jonathan Manning, Anjeli Mase, Mikaela Matera-Vatnick, Neuza Reis Matias, Caitlin E McDonough-Goldstein, Aaron McGeever, Alex D McLachlan, Paola Moreno-Roman, Norma Neff, Megan Neville, Sang Ngo, Tanja Nielsen, Caitlin E O'Brien, David Osumi-Sutherland, Mehmet Neset Özel, Irene Papatheodorou, Maja Petkovic, Clare Pilgrim, Angela Oliveira Pisco, Carolina Reisenman, Erin Nicole Sanders, Gilberto Dos Santos, Kristin Scott, Aparna Sherlekar, Philip Shiu, David Sims, Rene V Sit, Maija Slaidina, Harold E Smith, Gabriella Sterne, Yu-Han Su, Daniel Sutton, Marco Tamayo, Michelle Tan, Ibrahim Tastekin, Christoph Treiber, David Vacek, Georg Vogler, Scott Waddell, Wanpeng Wang, Rachel I Wilson, Mariana F Wolfner, Yiu-Cheung E Wong, Anthony Xie, Jun Xu, Shinya Yamamoto, Jia Yan, Zepeng Yao, Kazuki Yoda, Ruijun Zhu, Robert P Zinzen
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. Science (New York, N.Y.) 375 (6584) (2022)
Jasper Janssens, Sara Aibar, Ibrahim Ihsan Taskiran, Joy N Ismail, Alicia Estacio Gomez, Gabriel Aughey, Katina I Spanier, Florian V De Rop, Carmen Bravo González-Blas, Marc S Dionne, Krista Grimes, Xiao Jiang Quan, Dafni Papasokrati, Gert Hulselmans, Samira Makhzami, Maxime De Waegeneer, Valerie Christiaens, Tony Southall, Stein Aerts
Decoding gene regulation in the fly brain. Nature 601 (7894) (2022)
Carmen Bravo Gonzalez-Blas, Xiao-Jiang Quan, Ramon Duran-Romaña, Ibrahim Ihsan Taskiran, Duygu Koldere, Kristofer Davie, Valerie Christiaens, Samira Makhzami, Gert Hulselmans, Maxime De Waegeneer, David Mauduit, Suresh Poovathingal, Sara Aibar, Stein Aerts
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics. Molecular systems biology 16 (5) (2021)
Liesbeth Minnoye, Georgi K Marinov, Thomas Krausgruber, Lixia Pan, Alexandre P Marand, Stefano Secchia, William J Greenleaf, Eileen E M Furlong, Keji Zhao, Robert J Schmitz, Christoph Bock, Stein Aerts
Chromatin accessibility profiling methods. Nature reviews. Methods primers 1 (2021)
Zeynep Kalender Atak, Ibrahim Ihsan Taskiran, Jonas Demeulemeester, Christopher Flerin, David Mauduit, Liesbeth Minnoye, Gert Hulselmans, Valerie Christiaens, Ghanem-Elias Ghanem, Jasper Wouters, Stein Aerts
Interpretation of allele-specific chromatin accessibility using cell state-aware deep learning. Genome research 31 (6) (2021)
Liesbeth Minnoye, Georgi K Marinov, Thomas Krausgruber, Lixia Pan, Alexandre P Marand, Stefano Secchia, William J Greenleaf, Eileen E M Furlong, Keji Zhao, Robert J Schmitz, Christoph Bock, Stein Aerts
Chromatin accessibility profiling methods. Nature reviews. Methods primers 1 (2021)
Liesbeth Minnoye, Georgi K Marinov, Thomas Krausgruber, Lixia Pan, Alexandre P Marand, Stefano Secchia, William J Greenleaf, Eileen E M Furlong, Keji Zhao, Robert J Schmitz, Christoph Bock, Stein Aerts
Chromatin accessibility profiling methods. Nature reviews. Methods primers 1 (2021)
Abdel Rahman Abdel Fattah, Brian Daza, Gregorius Rustandi, Miguel Ángel Berrocal-Rubio, Benjamin Gorissen, Suresh Poovathingal, Kristofer Davie, Jorge Barrasa-Fano, Mar Cóndor, Xuanye Cao, Derek Hadar Rosenzweig, Yunping Lei, Richard H Finnell, Catherine M Verfaillie, Maurilio Sampaolesi, Peter Dedecker, Hans Van Oosterwyck, Stein Aerts, Adrian Ranga
Actuation enhances patterning in human neural tube organoids. Nature communications 12 (1) (2021)
Liesbeth Minnoye, Georgi K Marinov, Thomas Krausgruber, Lixia Pan, Alexandre P Marand, Stefano Secchia, William J Greenleaf, Eileen E M Furlong, Keji Zhao, Robert J Schmitz, Christoph Bock, Stein Aerts
Chromatin accessibility profiling methods. Nature reviews. Methods primers 1 (2021)
David Mauduit, Ibrahim Ihsan Taskiran, Liesbeth Minnoye, Maxime de Waegeneer, Valerie Christiaens, Gert Hulselmans, Jonas Demeulemeester, Jasper Wouters, Stein Aerts
Analysis of long and short enhancers in melanoma cell states. eLife 10 (2021)
Nikolaus Rajewsky, Geneviève Almouzni, Stanislaw A Gorski, Stein Aerts, Bjørt K Kragesteen, Michela G Bertero, Christoph Bock, Annelien L Bredenoord, Giacomo Cavalli, Susanna Chiocca, Hans Clevers, Bart De Strooper, Angelika Eggert, Jan Ellenberg, Xosé M Fernández, Marek Figlerowicz, Susan M Gasser, Norbert Hübner, Jørgen Kjems, Jürgen Arthur Knoblich, Grietje Krabbe, Peter Lichter, Sten Linnarsson, Jean-Christophe Marine, John C Marioni, Marc A Marti-Renom, Mihai M Netea, Dörthe Nickel, Marcelo Nollmann, Halina R Novak, Helen Parkinson, Stefano Piccolo, Inês Pinheiro, Ana Pombo, Christian Popp, Juan I Garaycoechea, Sergio Roman-Roman, Philip Rosenstiel, Joachim L Schultze, Oliver Stegle, Amos Tanay, Giuseppe Testa, Dimitris Thanos, Fabian Joachim Theis, Maria-Elena Torres-Padilla, Alfonso Valencia, Céline Vallot, Alexander van Oudernaarden, Marie Vidal, Thierry Voet, null null
LifeTime and improving European healthcare through cell-based interceptive medicine. Nature 587 (7834) (2020)
Iván M Moya, Stéphanie A Castaldo, Laura Van den Mooter, Soheil Soheily, Leticia Sansores-Garcia, Jelle Jacobs, Inge Mannaerts, Jun Xie, Elisabeth Verboven, Hanne Hillen, Ana Algueró-Nadal, Ruchan Karaman, Matthias Van Haele, Weronika Kowalczyk, Maxime De Waegeneer, Stefaan Verhulst, Panagiotis Karras, Leen van Huffel, Lars Zender, Jean-Christophe Marine, Tania Roskams, Randy L Johnson, Stein Aerts, Leo A van Grunsven, Georg A Halder
Peritumoral activation of the Hippo pathway effectors YAP and TAZ suppresses liver cancer in mice. Science (New York, N.Y.) 366 (6468) (2020)
Jasper Wouters, Zeynep Kalender-Atak, Liesbeth Minnoye, Katina I Spanier, Maxime De Waegeneer, Carmen Bravo González-Blas, David Mauduit, Kristofer Davie, Gert Hulselmans, Ahmad Najem, Michael Dewaele, Dennis Pedri, Florian Rambow, Samira Makhzami, Valerie Christiaens, Frederik Ceyssens, Ghanem Ghanem, Jean-Christophe Marine, Suresh Poovathingal, Stein Aerts
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma. Nature cell biology 22 (8) (2020)
Thomas A Ravenscroft, Jasper Janssens, Pei-Tseng Lee, Burak Tepe, Paul C Marcogliese, Samira Makhzami, Todd C Holmes, Stein Aerts, Hugo J Bellen
Drosophila Voltage-Gated Sodium Channels Are Only Expressed in Active Neurons and Are Localized to Distal Axonal Initial Segment-like Domains. The Journal of neuroscience : the official journal of the Society for Neuroscience 40 (42) (2020)
Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, Quentin Rouchon, Toni Verbeiren, Dries De Maeyer, Joke Reumers, Yvan Saeys, Stein Aerts
A scalable SCENIC workflow for single-cell gene regulatory network analysis. Nature protocols 15 (7) (2020)
Isabel Almudi, Joel Vizueta, Christopher D R Wyatt, Alex de Mendoza, Ferdinand Marletaz, Panos N Firbas, Roberto Feuda, Giulio Masiero, Patricia Medina, Ana Alcaina Caro, Fernando Cruz, Jèssica Gómez Garrido, Marta Gut, Tyler S Alioto, Carlos Vargas-Chavez, Kristofer Davie, Bernhard Misof, Josefa González, Stein Aerts, Ryan Lister, Jordi Paps, Julio Rozas, Alejandro Sánchez Gracia, Manuel Irimia, Ignacio Maeso, Fernando Casares
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature communications 11 (1) (2020)
Liesbeth Minnoye, Ibrahim Ihsan Taskiran, David Mauduit, Maurizio Fazio, Linde Van Aerschot, Gert Hulselmans, Valerie Christiaens, Samira Makhzami, Monika Seltenhammer, Panagiotis Karras, Aline Primot, Edouard Cadieu, Ellen van Rooijen, Jean-Christophe Marine, Giorgia Egidy, Ghanem-Elias Ghanem, Leonard Zon, Jasper Wouters, Stein Aerts
Cross-species analysis of enhancer logic using deep learning. Genome research 30 (12) (2020)
Carmen Bravo Gonzalez-Blas, Liesbeth Minnoye, Dafni Papasokrati, Sara Aibar, Gert Hulselmans, Valerie Christiaens, Kristofer Davie, Jasper Wouters, Stein Aerts
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data. Nature methods 16 (5) (2019)
Jelle Jacobs, Mardelle Atkins, Kristofer Davie, Hana Imrichova, Lucia Romanelli, Valerie Christiaens, Gert Hulselmans, Delphine Potier, Jasper Wouters, Ibrahim Ihsan Taskiran, Giulia Paciello, Carmen B González-Blas, Duygu Koldere, Sara Aibar, Georg Halder, Stein Aerts
The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes. Nature genetics 50 (7) (2018)
Sara Aibar, Carmen Bravo Gonzalez-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts, Joost van den Oord, Zeynep Kalender Atak, Jasper Wouters, Stein Aerts
SCENIC: single-cell regulatory network inference and clustering. Nature methods 14 (11) (2017)

Stein Aerts.css-eqlu8i{font-size:small;padding-left:4px;} (S Aerts)

Publication Activity (10 Years)

Top Topics

Top Venues

Stein Aerts (S Aerts)