Kristofer Davie

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 18

Top Topics

Subarachnoid Hemorrhage

Mesenchymal Stem Cells

Top Venues

Science (New York, N.Y.)

Nature neuroscience

Nature communications

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Joana Dopp, Antonio Ortega, Kristofer Davie, Suresh Poovathingal, El-Sayed Baz, Sha Liu
Single-cell transcriptomics reveals that glial cells integrate homeostatic and circadian processes to drive sleep-wake cycles. Nature neuroscience 27 (2) (2024)
Joana Dopp, Antonio Ortega, Kristofer Davie, Suresh Poovathingal, El-Sayed Baz, Sha Liu
Single-cell transcriptomics reveals that glial cells integrate homeostatic and circadian processes to drive sleep-wake cycles. Nature neuroscience 27 (2) (2024)
Joana Dopp, Antonio Ortega, Kristofer Davie, Suresh Poovathingal, El-Sayed Baz, Sha Liu
Single-cell transcriptomics reveals that glial cells integrate homeostatic and circadian processes to drive sleep-wake cycles. Nature neuroscience (2024)
Joana Dopp, Antonio Ortega, Kristofer Davie, Suresh Poovathingal, El-Sayed Baz, Sha Liu
Single-cell transcriptomics reveals that glial cells integrate homeostatic and circadian processes to drive sleep-wake cycles. Nature neuroscience 27 (2) (2024)
Joana Dopp, Antonio Ortega, Kristofer Davie, Suresh Poovathingal, El-Sayed Baz, Sha Liu
Single-cell transcriptomics reveals that glial cells integrate homeostatic and circadian processes to drive sleep-wake cycles. Nature neuroscience 27 (2) (2024)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Sara Calafate, Gökhan Özturan, Nicola Thrupp, Jeroen Vanderlinden, Luísa Santa-Marinha, Rafaela Morais-Ribeiro, Antonella Ruggiero, Ivan Bozic, Thomas Rusterholz, Blanca Lorente-Echeverría, Marcelo Dias, Wei-Ting Chen, Mark Fiers, Ashley Lu, Ine Vlaeminck, Eline Creemers, Katleen Craessaerts, Joris Vandenbempt, Luuk van Boekholdt, Suresh Poovathingal, Kristofer Davie, Dietmar Rudolf Thal, Keimpe Wierda, Tiago Gil Oliveira, Inna Slutsky, Antoine R Adamantidis, Bart De Strooper, Joris de Wit
Early alterations in the MCH system link aberrant neuronal activity and sleep disturbances in a mouse model of Alzheimer's disease. Nature neuroscience (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) (2023)
Ryohei Iwata, Pierre Casimir, Emir Erkol, Leïla Boubakar, Mélanie Planque, Isabel M Gallego López, Martyna Ditkowska, Vaiva Gaspariunaite, Sofie Beckers, Daan Remans, Katlijn Vints, Anke Vandekeere, Suresh Poovathingal, Matthew Bird, Ine Vlaeminck, Eline Creemers, Keimpe Wierda, Nikky Corthout, Pieter Vermeersch, Sebastien Christian Carpentier, Kristofer Davie, Massimilliano Mazzone, Natalia V Gounko, Stein Aerts, Bart Ghesquiere, Sarah-Maria Fendt, Pierre Vanderhaeghen
Mitochondria metabolism sets the species-specific tempo of neuronal development. Science (New York, N.Y.) 379 (6632) (2023)
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Vincent Gardeux, Wouter Saelens, Fabrice P A David, Maria Brbic, Katina I Spanier, Jure Leskovec, Colleen N McLaughlin, Qijing Xie, Robert C Jones, Katja Brueckner, Jiwon Shim, Sudhir Gopal Tattikota, Frank Schnorrer, Katja Rust, Rebecca P Kim-Yip, Zita Carvalho-Santos, Carlos Ribeiro, Soumitra Pal, Sharvani Mahadevaraju, Teresa M Przytycka, Aaron M Allen, Stephen F Goodwin, Cameron W Berry, Margaret T Fuller, Helen White-Cooper, Erika L Matunis, Stephen DiNardo, Anthony Galenza, Lucy Erin O'Brien, Julian A T Dow, null null, Heinrich Jasper, Brian Oliver, Norbert Perrimon, Bart Deplancke, Stephen R Quake, Liqun Luo, Stein Aerts, Devika Agarwal, Yasir Ahmed-Braimah, Michelle Arbeitman, Majd M Ariss, Jordan Augsburger, Kumar Ayush, Catherine C Baker, Torsten Banisch, Katja Birker, Rolf Bodmer, Benjamin Bolival, Susanna E Brantley, Julie A Brill, Nora C Brown, Norene A Buehner, Xiaoyu Tracy Cai, Rita Cardoso-Figueiredo, Fernando Casares, Amy Chang, Thomas R Clandinin, Sheela Crasta, Claude Desplan, Angela M Detweiler, Darshan B Dhakan, Erika Donà, Stefanie Engert, Swann Floc'hlay, Nancy George, Amanda J González-Segarra, Andrew K Groves, Samantha Gumbin, Yanmeng Guo, Devon E Harris, Yael Heifetz, Stephen L Holtz, Felix Horns, Bruno Hudry, Ruei-Jiun Hung, Yuh Nung Jan, Jacob S Jaszczak, Gregory S X E Jefferis, Jim Karkanias, Timothy L Karr, Nadja Sandra Katheder, James Kezos, Anna A Kim, Seung K Kim, Lutz Kockel, Nikolaos Konstantinides, Thomas B Kornberg, Henry M Krause, Andrew Thomas Labott, Meghan Laturney, Ruth Lehmann, Sarah Leinwand, Jiefu Li, Joshua Shing Shun Li, Kai Li, Ke Li, Liying Li, Tun Li, Maria Litovchenko, Han-Hsuan Liu, Yifang Liu, Tzu-Chiao Lu, Jonathan Manning, Anjeli Mase, Mikaela Matera-Vatnick, Neuza Reis Matias, Caitlin E McDonough-Goldstein, Aaron McGeever, Alex D McLachlan, Paola Moreno-Roman, Norma Neff, Megan Neville, Sang Ngo, Tanja Nielsen, Caitlin E O'Brien, David Osumi-Sutherland, Mehmet Neset Özel, Irene Papatheodorou, Maja Petkovic, Clare Pilgrim, Angela Oliveira Pisco, Carolina Reisenman, Erin Nicole Sanders, Gilberto Dos Santos, Kristin Scott, Aparna Sherlekar, Philip Shiu, David Sims, Rene V Sit, Maija Slaidina, Harold E Smith, Gabriella Sterne, Yu-Han Su, Daniel Sutton, Marco Tamayo, Michelle Tan, Ibrahim Tastekin, Christoph Treiber, David Vacek, Georg Vogler, Scott Waddell, Wanpeng Wang, Rachel I Wilson, Mariana F Wolfner, Yiu-Cheung E Wong, Anthony Xie, Jun Xu, Shinya Yamamoto, Jia Yan, Zepeng Yao, Kazuki Yoda, Ruijun Zhu, Robert P Zinzen
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. Science (New York, N.Y.) 375 (6584) (2022)
Carmen Bravo Gonzalez-Blas, Xiao-Jiang Quan, Ramon Duran-Romaña, Ibrahim Ihsan Taskiran, Duygu Koldere, Kristofer Davie, Valerie Christiaens, Samira Makhzami, Gert Hulselmans, Maxime De Waegeneer, David Mauduit, Suresh Poovathingal, Sara Aibar, Stein Aerts
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics. Molecular systems biology 16 (5) (2021)
Abdel Rahman Abdel Fattah, Brian Daza, Gregorius Rustandi, Miguel Ángel Berrocal-Rubio, Benjamin Gorissen, Suresh Poovathingal, Kristofer Davie, Jorge Barrasa-Fano, Mar Cóndor, Xuanye Cao, Derek Hadar Rosenzweig, Yunping Lei, Richard H Finnell, Catherine M Verfaillie, Maurilio Sampaolesi, Peter Dedecker, Hans Van Oosterwyck, Stein Aerts, Adrian Ranga
Actuation enhances patterning in human neural tube organoids. Nature communications 12 (1) (2021)
Jasper Wouters, Zeynep Kalender-Atak, Liesbeth Minnoye, Katina I Spanier, Maxime De Waegeneer, Carmen Bravo González-Blas, David Mauduit, Kristofer Davie, Gert Hulselmans, Ahmad Najem, Michael Dewaele, Dennis Pedri, Florian Rambow, Samira Makhzami, Valerie Christiaens, Frederik Ceyssens, Ghanem Ghanem, Jean-Christophe Marine, Suresh Poovathingal, Stein Aerts
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma. Nature cell biology 22 (8) (2020)
Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, Quentin Rouchon, Toni Verbeiren, Dries De Maeyer, Joke Reumers, Yvan Saeys, Stein Aerts
A scalable SCENIC workflow for single-cell gene regulatory network analysis. Nature protocols 15 (7) (2020)
Isabel Almudi, Joel Vizueta, Christopher D R Wyatt, Alex de Mendoza, Ferdinand Marletaz, Panos N Firbas, Roberto Feuda, Giulio Masiero, Patricia Medina, Ana Alcaina Caro, Fernando Cruz, Jèssica Gómez Garrido, Marta Gut, Tyler S Alioto, Carlos Vargas-Chavez, Kristofer Davie, Bernhard Misof, Josefa González, Stein Aerts, Ryan Lister, Jordi Paps, Julio Rozas, Alejandro Sánchez Gracia, Manuel Irimia, Ignacio Maeso, Fernando Casares
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature communications 11 (1) (2020)
Carmen Bravo Gonzalez-Blas, Liesbeth Minnoye, Dafni Papasokrati, Sara Aibar, Gert Hulselmans, Valerie Christiaens, Kristofer Davie, Jasper Wouters, Stein Aerts
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data. Nature methods 16 (5) (2019)