Gui-Jun Zhang (Guijun Zhang)

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 25

Top Topics

Molecular Dynamics Simulations

Single Molecule

Top Venues

Briefings in bioinformatics

Communications biology

Journal of chemical information and modeling

This page only lists publications with an associated author ORCID identifier.

Publications

Hui Wang, Dong Liu, Kailong Zhao, Yajun Wang, Gui-Jun Zhang
SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition. Briefings in bioinformatics 25 (3) (2024)
Kailong Zhao, Pengxin Zhao, Suhui Wang, Yuhao Xia, Gui-Jun Zhang
FoldPAthreader: predicting protein folding pathway using a novel folding force field model derived from known protein universe. Genome biology 25 (1) (2024)
Kailong Zhao, Pengxin Zhao, Suhui Wang, Yuhao Xia, Gui-Jun Zhang
FoldPAthreader: predicting protein folding pathway using a novel folding force field model derived from known protein universe. Genome biology 25 (1) (2024)
Ziying Zhang, Yaxian Cai, Biao Zhang, Wei Zheng, Peter L Freddolino, Gui-Jun Zhang, Xiao-Gen Zhou
DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting. Briefings in bioinformatics 25 (2) (2024)
Kailong Zhao, Pengxin Zhao, Suhui Wang, Yuhao Xia, Gui-Jun Zhang
FoldPAthreader: predicting protein folding pathway using a novel folding force field model derived from known protein universe. Genome biology 25 (1) (2024)
Hui Wang, Dong Liu, Kailong Zhao, Yajun Wang, Gui-Jun Zhang
SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition. Briefings in bioinformatics 25 (3) (2024)
Kailong Zhao, Pengxin Zhao, Suhui Wang, Yuhao Xia, Gui-Jun Zhang
FoldPAthreader: predicting protein folding pathway using a novel folding force field model derived from known protein universe. Genome biology 25 (1) (2024)
Ziying Zhang, Yaxian Cai, Biao Zhang, Wei Zheng, Peter L Freddolino, Gui-Jun Zhang, Xiao-Gen Zhou
DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting. Briefings in bioinformatics 25 (2) (2024)
Hui Wang, Dong Liu, Kailong Zhao, Yajun Wang, Gui-Jun Zhang
SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition. Briefings in bioinformatics 25 (3) (2024)
Jun Hu, Yu-Xuan Tang, Yu Zhou, Zhe Li, Bing Rao, Gui-Jun Zhang
Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism. Journal of chemical information and modeling (2023)
Hai-Tao Zhu, Yu-Hao Xia, Gui-Jun Zhang
E2EDA: Protein Domain Assembly Based on End-to-End Deep Learning. Journal of chemical information and modeling (2023)
Zhaohong Huang, Xinyue Cui, Yuhao Xia, Kailong Zhao, Gui-Jun Zhang
Pathfinder: Protein folding pathway prediction based on conformational sampling. PLoS computational biology 19 (9) (2023)
Kailong Zhao, Yuhao Xia, Fujin Zhang, Xiao-Gen Zhou, Stan Ziqing Li, Gui-Jun Zhang
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader. Communications biology 6 (1) (2023)
Kailong Zhao, Yuhao Xia, Fujin Zhang, Xiao-Gen Zhou, Stan Ziqing Li, Gui-Jun Zhang
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader. Communications biology 6 (1) (2023)
Guangxing He, Jun Liu, Dong Liu, Gui-Jun Zhang
GraphGPSM: a global scoring model for protein structure using graph neural networks. Briefings in bioinformatics (2023)
Kailong Zhao, Yuhao Xia, Fujin Zhang, Xiao-Gen Zhou, Stan Ziqing Li, Gui-Jun Zhang
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader. Communications biology 6 (1) (2023)
Yuhao Xia, Kailong Zhao, Dong Liu, Xiao-Gen Zhou, Gui-Jun Zhang
Multi-domain and complex protein structure prediction using inter-domain interactions from deep learning. Communications biology 6 (1) (2023)
Kailong Zhao, Yuhao Xia, Fujin Zhang, Xiao-Gen Zhou, Stan Ziqing Li, Gui-Jun Zhang
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader. Communications biology 6 (1) (2023)
Dong Liu, Biao Zhang, Jun Liu, Hui Li, Le Song, Gui-Jun Zhang
Assessing protein model quality based on deep graph coupled networks using protein language model. Briefings in bioinformatics 25 (1) (2023)
Fengqi Ge, Chunxiang Peng, Xinyue Cui, Yuhao Xia, Gui-Jun Zhang
Inter-domain distance prediction based on deep learning for domain assembly. Briefings in bioinformatics (2023)
Kailong Zhao, Fang Liang, Yuhao Xia, Minghua Hou, Gui-Jun Zhang
Recent Advances in Protein Folding Pathway Prediction through Computational Methods. Current medicinal chemistry (2023)
Chun-Xiang Peng, Xiao-Gen Zhou, Yu-Hao Xia, Jun Liu, Ming-Hua Hou, Gui-Jun Zhang
Structural analogue-based protein structure domain assembly assisted by deep learning. Bioinformatics (Oxford, England) 38 (19) (2022)
Xiao-Gen Zhou, Chunxiang Peng, Wei Zheng, Yang Li, Gui-Jun Zhang, Yang Zhang
DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction. Nucleic acids research (2022)
Biao Zhang, Dong Liu, Yang Zhang, Hong-Bin Shen, Gui-Jun Zhang
Accurate flexible refinement for atomic-level protein structure using cryo-EM density maps and deep learning. Briefings in bioinformatics 23 (2) (2022)
Jun Liu, Kailong Zhao, Gui-Jun Zhang
Improved model quality assessment using sequence and structural information by enhanced deep neural networks. Briefings in bioinformatics (2022)