Wei Zheng

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 34

Top Topics

Convolutional Neural Network

Hepatitis B Virus

Top Venues

Nature communications

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Qiqige Wuyun, Yihan Chen, Yifeng Shen, Yang Cao, Gang Hu, Wei Cui, Jianzhao Gao, Wei Zheng
Recent Progress of Protein Tertiary Structure Prediction. Molecules (Basel, Switzerland) 29 (4) (2024)
Qiqige Wuyun, Yihan Chen, Yifeng Shen, Yang Cao, Gang Hu, Wei Cui, Jianzhao Gao, Wei Zheng
Recent Progress of Protein Tertiary Structure Prediction. Molecules (Basel, Switzerland) 29 (4) (2024)
Ziying Zhang, Yaxian Cai, Biao Zhang, Wei Zheng, Peter L Freddolino, Gui-Jun Zhang, Xiao-Gen Zhou
DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting. Briefings in bioinformatics 25 (2) (2024)
Wei Zheng, Qiqige Wuyun, Yang Li, Chengxin Zhang, Peter L Freddolino, Yang Zhang
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data. Nature methods (2024)
Wei Zheng, Qiqige Wuyun, Yang Li, Chengxin Zhang, Peter L Freddolino, Yang Zhang
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data. Nature methods 21 (2) (2024)
Wei Zheng, Qiqige Wuyun, Yang Li, Chengxin Zhang, Peter L Freddolino, Yang Zhang
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data. Nature methods 21 (2) (2024)
Qiqige Wuyun, Yihan Chen, Yifeng Shen, Yang Cao, Gang Hu, Wei Cui, Jianzhao Gao, Wei Zheng
Recent Progress of Protein Tertiary Structure Prediction. Molecules (Basel, Switzerland) 29 (4) (2024)
Wei Zheng, Qiqige Wuyun, Yang Li, Chengxin Zhang, Peter L Freddolino, Yang Zhang
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data. Nature methods 21 (2) (2024)
Ziying Zhang, Yaxian Cai, Biao Zhang, Wei Zheng, Peter L Freddolino, Gui-Jun Zhang, Xiao-Gen Zhou
DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting. Briefings in bioinformatics 25 (2) (2024)
Wei Zheng, Qiqige Wuyun, Yang Li, Chengxin Zhang, Peter L Freddolino, Yang Zhang
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data. Nature methods 21 (2) (2024)
Mariantonietta Di Stefano, Giuseppina Faleo, Thomas Leitner, Wei Zheng, Yang Zhang, Amna Hassan, Marwan J Alwazzeh, Josè R Fiore, Mona H Ismail, Teresa Antonia Santantonio
Molecular and Genetic Characterization of Hepatitis B Virus (HBV) among Saudi Chronically HBV-Infected Individuals. Viruses 15 (2) (2023)
Wei Zheng, Qiqige Wuyun, Peter L Freddolino, Yang Zhang
Integrating deep learning, threading alignments, and a multi-MSA strategy for high-quality protein monomer and complex structure prediction in CASP15. Proteins (2023)
Mariantonietta Di Stefano, Giuseppina Faleo, Thomas Leitner, Wei Zheng, Yang Zhang, Amna Hassan, Marwan J Alwazzeh, Josè R Fiore, Mona H Ismail, Teresa Antonia Santantonio
Molecular and Genetic Characterization of Hepatitis B Virus (HBV) among Saudi Chronically HBV-Infected Individuals. Viruses 15 (2) (2023)
Xiao-Gen Zhou, Yang Li, Chengxin Zhang, Wei Zheng, Guijun Zhang, Yang Zhang
Progressive assembly of multi-domain protein structures from cryo-EM density maps. Nature computational science 2 (4) (2022)
Haifeng Zhang, Renjie Shang, Kwantae Kim, Wei Zheng, Christopher J Johnson, Lei Sun, Xiang Niu, Liang Liu, Jingqi Zhou, Lingshu Liu, Zheng Zhang, Theodore Akira Uyeno, Jimin Pei, Skye D Fissette, Stephen A Green, Sukhada P Samudra, Junfei Wen, Jianli Zhang, Jonathan T Eggenschwiler, Douglas B Menke, Marianne E Bronner, Nick V Grishin, Weiming Li, Kaixiong Ye, Yang Zhang, Travis M Rotterman, Pengpeng Bi
Evolution of a chordate-specific mechanism for myoblast fusion. Science advances 8 (35) (2022)
Xiao-Gen Zhou, Chunxiang Peng, Wei Zheng, Yang Li, Gui-Jun Zhang, Yang Zhang
DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction. Nucleic acids research (2022)
Xiao-Gen Zhou, Wei Zheng, Yang Li, Robin Pearce, Chengxin Zhang, Eric W Bell, Guijun Zhang, Yang Zhang
I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction. Nature protocols 17 (10) (2022)
Pengshuo Yang, Wei Zheng, Kang Ning, Yang Zhang
Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction. Proceedings of the National Academy of Sciences of the United States of America 118 (49) (2022)
Wei Zheng, Qiqige Wuyun, Xiaogen Zhou, Yang Li, Peter L Freddolino, Yang Zhang
LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation. Nucleic acids research (2022)
Wei Zheng, Yang Li, Chengxin Zhang, Xiao-Gen Zhou, Robin Pearce, Eric W Bell, Xiaoqiang Huang, Yang Zhang
Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14. Proteins 89 (12) (2021)
Chengxin Zhang, Wei Zheng, Micah Cheng, Gilbert S Omenn, Peter L Freddolino, Yang Zhang
Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome. Journal of proteome research 20 (2) (2021)
Yang Li, Chengxin Zhang, Eric W Bell, Wei Zheng, Xiao-Gen Zhou, Dong-Jun Yu, Yang Zhang
Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks. PLoS computational biology 17 (3) (2021)
Young-Tae Lee, Alex Ayoub, Sang-Ho Park, Liang Sha, Jing Xu, Fengbiao Mao, Wei Zheng, Yang Zhang, Uhn-Soo Cho, Nils O Lindström
Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nature communications 12 (1) (2021)
Yang Li, Chengxin Zhang, Wei Zheng, Xiao-Gen Zhou, Eric W Bell, Dong-Jun Yu, Yang Zhang
Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14. Proteins 89 (12) (2021)
S M Mortuza, Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Yang Zhang
Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions. Nature communications 12 (1) (2021)
Jaie Woodard, Wei Zheng, Yang Zhang
Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders. PLoS computational biology 17 (9) (2021)
Wei Zheng, Qiqige Wuyun, Micah Cheng, Gang Hu, Yanping Zhang
Two-Level Protein Methylation Prediction using structure model-based features. Scientific reports 10 (1) (2020)
Sang Ho Park, Alex Ayoub, Young-Tae Lee, Jing Xu, Hanseong Kim, Wei Zheng, Biao Zhang, Liang Sha, Sojin An, Yang Zhang, Michael A Cianfrocco, Min Su, Nils O Lindström, Uhn-Soo Cho
Publisher Correction: Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nature communications 11 (1) (2020)
Chengxin Zhang, Wei Zheng, Xiaoqiang Huang, Eric W Bell, Xiao-Gen Zhou, Yang Zhang
Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1. Journal of proteome research 19 (4) (2020)
Siqi Wu, Chang Tian, Panpan Liu, Dongjie Guo, Wei Zheng, Xiaoqiang Huang, Yang Zhang, Lijun Liu
Effects of SARS-CoV-2 mutations on protein structures and intraviral protein-protein interactions. Journal of medical virology 93 (4) (2020)
Sang Ho Park, Alex Ayoub, Young-Tae Lee, Jing Xu, Hanseong Kim, Wei Zheng, Biao Zhang, Liang Sha, Sojin An, Yang Zhang, Michael A Cianfrocco, Min Su, Nils O Lindström, Uhn-Soo Cho
Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nature communications 10 (1) (2019)
Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S M Mortuza, Yang Zhang
Deep-learning contact-map guided protein structure prediction in CASP13. Proteins 87 (12) (2019)
Wei Zheng, Qiqige Wuyun, Yang Li, S M Mortuza, Chengxin Zhang, Robin Pearce, Jishou Ruan, Yang Zhang
Detecting distant-homology protein structures by aligning deep neural-network based contact maps. PLoS computational biology 15 (10) (2019)
Yang Li, Wei Zheng, Wuyun Qiqige, Shujuan Cao, Jishou Ruan, Yanping Zhang
A Novel Method for Drug Screen to Regulate G Protein-Coupled Receptors in the Metabolic Network of Alzheimer's Disease. BioMed research international 2018 (2018)
Yan-ping Zhang, Ya-jun Sheng, Wei Zheng, Ping-an He, Ji-shuo Ruan
Novel numerical characterization of protein sequences based on individual amino acid and its application. BioMed research international 2015 (2015)