Mikhail Shugay (M Shugay)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 26

Top Venues

eLife

Nature methods

Nature computational science

Nature biotechnology

Universidad de Navarra (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Universidad de Navarra May 01 2011 - Nov 22 2013

Spain

PHD :: Genetics

Moscow State University - Jan 30 2011

Russia

MSC :: Physics

Publications

Vadim K Karnaukhov, Dmitrii S Shcherbinin, Anton O Chugunov, Dmitriy M Chudakov, Roman G Efremov, Ivan V Zvyagin, Mikhail Shugay
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen. Nature computational science (2024)
Tatyana O Nakonechnaya, Bruno Moltedo, Ekaterina V Putintseva, Sofya Leyn, Dmitry A Bolotin, Olga V Britanova, Mikhail Shugay, Dmitriy M Chudakov
Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism. eLife 12 (2024)
Tatyana O Nakonechnaya, Bruno Moltedo, Ekaterina V Putintseva, Sofya Leyn, Dmitry A Bolotin, Olga V Britanova, Mikhail Shugay, Dmitriy M Chudakov
Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism. eLife 12 (2024)
Tatyana O Nakonechnaya, Bruno Moltedo, Ekaterina V Putintseva, Sofya Leyn, Dmitry A Bolotin, Olga V Britanova, Mikhail Shugay, Dmitriy M Chudakov
Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism. eLife 12 (2024)
Vadim K Karnaukhov, Dmitrii S Shcherbinin, Anton O Chugunov, Dmitriy M Chudakov, Roman G Efremov, Ivan V Zvyagin, Mikhail Shugay
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen. Nature computational science 4 (7) (2024)
Vadim K Karnaukhov, Dmitrii S Shcherbinin, Anton O Chugunov, Dmitriy M Chudakov, Roman G Efremov, Ivan V Zvyagin, Mikhail Shugay
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen. Nature computational science 4 (7) (2024)
Tatyana O Nakonechnaya, Bruno Moltedo, Ekaterina V Putintseva, Sofya Leyn, Dmitry A Bolotin, Olga V Britanova, Mikhail Shugay, Dmitriy M Chudakov
Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism. eLife 12 (2024)
Tatyana O Nakonechnaya, Bruno Moltedo, Ekaterina V Putintseva, Sofya Leyn, Dmitry A Bolotin, Olga V Britanova, Mikhail Shugay, Dmitriy M Chudakov
Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism. eLife 12 (2024)
Valentin Quiniou, Pierre Barennes, Vanessa Mhanna, Paul Stys, Helene Vantomme, Zhicheng Zhou, Federica Martina, Nicolas Coatnoan, Michele Barbie, Hang-Phuong Pham, Béatrice Clémenceau, Henri Vie, Mikhail Shugay, Adrien Six, Barbara Brandao, Roberto Mallone, Encarnita Mariotti-Ferrandiz, David Klatzmann
Human thymopoiesis produces polyspecific CD8 + α/β T cells responding to multiple viral antigens. eLife 12 (2023)
Valentin Quiniou, Pierre Barennes, Vanessa Mhanna, Paul Stys, Helene Vantomme, Zhicheng Zhou, Federica Martina, Nicolas Coatnoan, Michele Barbie, Hang-Phuong Pham, Béatrice Clémenceau, Henri Vie, Mikhail Shugay, Adrien Six, Barbara Brandao, Roberto Mallone, Encarnita Mariotti-Ferrandiz, David Klatzmann
Human thymopoiesis produces polyspecific CD8 + α/β T cells responding to multiple viral antigens. eLife 12 (2023)
Valentin Quiniou, Pierre Barennes, Vanessa Mhanna, Paul Stys, Helene Vantomme, Zhicheng Zhou, Federica Martina, Nicolas Coatnoan, Michele Barbie, Hang-Phuong Pham, Béatrice Clémenceau, Henri Vie, Mikhail Shugay, Adrien Six, Barbara Brandao, Roberto Mallone, Encarnita Mariotti-Ferrandiz, David Klatzmann
Human thymopoiesis produces polyspecific CD8 + α/β T cells responding to multiple viral antigens. eLife 12 (2023)
Valentin Quiniou, Pierre Barennes, Vanessa Mhanna, Paul Stys, Helene Vantomme, Zhicheng Zhou, Federica Martina, Nicolas Coatnoan, Michele Barbie, Hang-Phuong Pham, Béatrice Clémenceau, Henri Vie, Mikhail Shugay, Adrien Six, Barbara Brandao, Roberto Mallone, Encarnita Mariotti-Ferrandiz, David Klatzmann
Human thymopoiesis produces polyspecific CD8 + α/β T cells responding to multiple viral antigens. eLife 12 (2023)
Mikhail Goncharov, Dmitry Bagaev, Dmitrii Shcherbinin, Ivan V Zvyagin, Dmitriy A Bolotin, Paul Glyndwr Thomas, Anastasia A Minervina, Mikhail V Pogorelyy, Kristin Ladell, James E McLaren, David A Price, Thi H O Nguyen, Louise C Rowntree, E Bridie Clemens, Katherine Kedzierska, Garry Dolton, Cristina Rafael Rius, Andrew K Sewell, Jerome Samir, Fabio Luciani, Ksenia V Zornikova, Alexandra A Khmelevskaya, Saveliy A Sheetikov, Grigory A Efimov, Dmitriy M Chudakov, Mikhail Shugay
VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2. Nature methods 19 (9) (2022)
Artem Mikelov, Evgeniia I Alekseeva, Ekaterina A Komech, Dmitry B Staroverov, Maria A Turchaninova, Mikhail Shugay, Dmitriy M Chudakov, Georgii A Bazykin, Ivan V Zvyagin
Memory persistence and differentiation into antibody-secreting cells accompanied by positive selection in longitudinal BCR repertoires. eLife 11 (2022)
Vadim Karnaukhov, Wayne Paes, Isaac B Woodhouse, Thomas Partridge, Annalisa Nicastri, Simon Brackenridge, Dmitrii Scherbinin, Dmitry M Chudakov, Ivan V Zvyagin, Nicola Ternette, Hashem Koohy, Persephone Borrow, Mikhail Shugay
HLA binding of self-peptides is biased towards proteins with specific molecular functions. bioRxiv : the preprint server for biology (2021)
Kerui Peng, Yana Safonova, Mikhail Shugay, Alice B Popejoy, Oscar L Rodriguez, Felix Breden, Petter Brodin, Amanda M Burkhardt, Carlos Bustamante, Van-Mai Cao-Lormeau, Martin M Corcoran, Darragh Duffy, Macarena Fuentes-Guajardo, Ricardo Fujita, Victor Greiff, Vanessa D Jönsson, Xiao Liu, Lluis Quintana-Murci, Maura Rossetti, Jianming Xie, Gur Yaari, Wei Zhang, Khalid Olajide Adekoya, Khalid O Adekoya, Rahaman A Ahmed, Wei-Chiao Chang, Clive Gray, Yusuke Nakamura, William D Lees, Purvesh Khatri, Houda Alachkar, Cathrine Scheepers, Corey T Watson, Gunilla B Karlsson Hedestam, Serghei Mangul
Diversity in immunogenomics: the value and the challenge. Nature methods 18 (6) (2021)
Pierre Barennes, Valentin Quiniou, Mikhail Shugay, Evgeniy S Egorov, Alexey N Davydov, Dmitriy M Chudakov, Imran Uddin, Mazlina Ismail, Theres Oakes, Benjamin M Chain, Anne Eugster, Karl Kashofer, Peter P Rainer, Samuel Darko, Amy Ransier, Daniel C Douek, David Klatzmann, Encarnita Mariotti-Ferrandiz
Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases. Nature biotechnology 39 (2) (2020)
Nadezhda N Logunova, Valeriia V Kriukova, Pavel V Shelyakin, Evgeny S Egorov, Alina Pereverzeva, Nina G Bozhanova, Mikhail Shugay, Dmitrii S Shcherbinin, Mikhail V Pogorelyy, Ekaterina M Merzlyak, Vasiliy N Zubov, Jens Meiler, Dmitriy M Chudakov, Alexander S Apt, Olga V Britanova
MHC-II alleles shape the CDR3 repertoires of conventional and regulatory naïve CD4+ T cells. Proceedings of the National Academy of Sciences of the United States of America 117 (24) (2020)
Dmitrii S Shcherbinin, Vlad A Belousov, Mikhail Shugay
Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex. PLoS computational biology 16 (3) (2020)
Mikhail V Pogorelyy, Anastasia A Minervina, Mikhail Shugay, Dmitriy M Chudakov, Yury B Lebedev, Thierry Mora, Aleksandra M Walczak
Detecting T cell receptors involved in immune responses from single repertoire snapshots. PLoS biology 17 (6) (2019)
Dmitriy A Bolotin, Stanislav Poslavsky, Alexey N Davydov, Felix E Frenkel, Lorenzo Fanchi, Olga I Zolotareva, Saskia Hemmers, Ekaterina V Putintseva, Anna S Obraztsova, Mikhail Shugay, Ravshan I Ataullakhanov, Alexander Y Rudensky, Ton N Schumacher, Dmitriy M Chudakov
Antigen receptor repertoire profiling from RNA-seq data. Nature biotechnology 35 (10) (2019)
Paul-Gydeon Ritvo, Ahmed Saadawi, Pierre Barennes, Valentin Quiniou, Wahiba Chaara, Karim El Soufi, Benjamin Bonnet, Adrien Six, Mikhail Shugay, Encarnita Mariotti-Ferrandiz, David Klatzmann
High-resolution repertoire analysis reveals a major bystander activation of Tfh and Tfr cells. Proceedings of the National Academy of Sciences of the United States of America 115 (38) (2018)
Mikhail V Pogorelyy, Alla D Fedorova, James E McLaren, Kristin Ladell, Dmitri V Bagaev, Alexey V Eliseev, Artem I Mikelov, Anna E Koneva, Ivan V Zvyagin, David A Price, Dmitry M Chudakov, Mikhail Shugay
Exploring the pre-immune landscape of antigen-specific T cells. Genome medicine 10 (1) (2018)
Mikhail Shugay, Andrew R Zaretsky, Dmitriy A Shagin, Irina A Shagina, Ivan A Volchenkov, Andrey A Shelenkov, Mikhail Y Lebedin, Dmitriy V Bagaev, Sergey Lukyanov, Dmitriy M Chudakov
MAGERI: Computational pipeline for molecular-barcoded targeted resequencing. PLoS computational biology 13 (5) (2017)
Olga V Britanova, Mikhail Shugay, Ekaterina M Merzlyak, Dmitriy B Staroverov, Ekaterina V Putintseva, Maria A Turchaninova, Ilgar Z Mamedov, Mikhail V Pogorelyy, Dmitriy A Bolotin, Mark Izraelson, Alexey N Davydov, Evgeny S Egorov, Sofya A Kasatskaya, Denis V Rebrikov, Sergey Lukyanov, Dmitriy M Chudakov
Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians. Journal of immunology (Baltimore, Md. : 1950) 196 (12) (2016)
M A Turchaninova, A Davydov, O V Britanova, Mikhail Shugay, V Bikos, E S Egorov, V I Kirgizova, E M Merzlyak, D B Staroverov, Dmitriy A Bolotin, I Z Mamedov, M Izraelson, M D Logacheva, O Kladova, K Plevova, S Pospisilova, Dmitriy M Chudakov
High-quality full-length immunoglobulin profiling with unique molecular barcoding. Nature protocols 11 (9) (2016)
Dmitriy A Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Dmitriy M Chudakov
MiXCR: software for comprehensive adaptive immunity profiling. Nature methods 12 (5) (2015)
Lingying Ye, Jane C Goodall, Libin Zhang, Ekaterina V Putintseva, Brian Lam, Lei Jiang, Wei Liu, Jian Yin, Li Lin, Ting Li, Xin Wu, Giles Yeo, Mikhail Shugay, Dmitriy M Chudakov, Hill Gaston, Huji Xu
TCR usage, gene expression and function of two distinct FOXP3(+)Treg subsets within CD4(+)CD25(hi) T cells identified by expression of CD39 and CD45RO. Immunology and cell biology 94 (3) (2015)
Mikhail Shugay, Olga V Britanova, Ekaterina M Merzlyak, Maria A Turchaninova, Ilgar Z Mamedov, Timur R Tuganbaev, Dmitriy A Bolotin, Dmitry B Staroverov, Ekaterina V Putintseva, Karla Plevova, Carsten Linnemann, Dmitriy Shagin, Sarka Pospisilova, Sergey Lukyanov, Ton N Schumacher, Dmitriy M Chudakov
Towards error-free profiling of immune repertoires. Nature methods 11 (6) (2014)

Mikhail Shugay.css-eqlu8i{font-size:small;padding-left:4px;} (M Shugay)

Publication Activity (10 Years)

Top Topics

Top Venues

Mikhail Shugay (M Shugay)