Justin B Kinney (J B Kinney)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 25

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

eLife

Cold Spring Harbor Laboratory

Princeton University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Cold Spring Harbor Laboratory Nov 01 2014

United States

Assistant Professor :: Simons Center for Quantitative Biology

Cold Spring Harbor Laboratory Sep 01 2010 - Oct 31 2014

United States

Quantitative Biology Fellow :: Simons Center for Quantitative Biology

Cold Spring Harbor Laboratory Oct 01 2009 - Aug 31 2010

United States

Postdoctoral Fellow :: Simons Center for Quantitative Biology

Princeton University Sep 01 2008 - Oct 01 2009

United States

Postdoctoral Fellow :: Lewis Sigler Institute for Integrative Genomics

Education History

Princeton University

United States

PHD :: Physics

Publications

Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Anna Posfai, Juannan Zhou, David M McCandlish, Justin B Kinney
Gauge fixing for sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Anna Posfai, David M McCandlish, Justin B Kinney
Symmetry, gauge freedoms, and the interpretability of sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Anna Posfai, Juannan Zhou, David M McCandlish, Justin B Kinney
Gauge fixing for sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Anna Posfai, David M McCandlish, Justin B Kinney
Symmetry, gauge freedoms, and the interpretability of sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Anna Posfai, David M McCandlish, Justin B Kinney
Symmetry, gauge freedoms, and the interpretability of sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Anna Posfai, David M McCandlish, Justin B Kinney
Symmetry, gauge freedoms, and the interpretability of sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Anna Posfai, Juannan Zhou, David M McCandlish, Justin B Kinney
Gauge fixing for sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Anna Posfai, Juannan Zhou, David M McCandlish, Justin B Kinney
Gauge fixing for sequence-function relationships. bioRxiv : the preprint server for biology (2024)
Yuma Ishigami, Mandy S Wong, Carlos Martí-Gómez, Andalus Ayaz, Mahdi Kooshkbaghi, Sonya M Hanson, David M McCandlish, Adrian R Krainer, Justin B Kinney
Specificity, synergy, and mechanisms of splice-modifying drugs. Nature communications 15 (1) (2024)
Evan E Seitz, David M McCandlish, Justin B Kinney, Peter K Koo
Interpreting cis -regulatory mechanisms from genomic deep neural networks using surrogate models. bioRxiv : the preprint server for biology (2023)
Ammar Tareen, Mahdi Kooshkbaghi, Anna Posfai, William T Ireland, David M McCandlish, Justin B Kinney
MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect. Genome biology 23 (1) (2022)
Juannan Zhou, Mandy S Wong, Wei-Chia Chen, Adrian R Krainer, Justin B Kinney, David M McCandlish
Higher-order epistasis and phenotypic prediction. Proceedings of the National Academy of Sciences of the United States of America 119 (39) (2022)
Chirangini Pukhrambam, Vadim Molodtsov, Mahdi Kooshkbaghi, Ammar Tareen, Hoa Vu, Kyle S Skalenko, Min Su, Zhou Yin, Jared T Winkelman, Justin B Kinney, Richard H Ebright, Bryce E Nickels
Structural and mechanistic basis of σ-dependent transcriptional pausing. Proceedings of the National Academy of Sciences of the United States of America 119 (23) (2022)
Wei-Chia Chen, Juannan Zhou, Jason M Sheltzer, Justin B Kinney, David M McCandlish
Field-theoretic density estimation for biological sequence space with applications to 5' splice site diversity and aneuploidy in cancer. Proceedings of the National Academy of Sciences of the United States of America 118 (40) (2021)
Kyle S Skalenko, Lingting Li, Yuanchao Zhang, Irina O Vvedenskaya, Jared T Winkelman, Alexander L Cope, Deanne M Taylor, Premal Shah, Richard H Ebright, Justin B Kinney, Yu Zhang, Bryce E Nickels
Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 118 (27) (2021)
Y Hu, A Tareen, Y-J Sheu, W T Ireland, Christian Speck, Huilin Li, Leemor Joshua-Tor, Justin B Kinney, Bruce Stillman
Evolution of DNA replication origin specification and gene silencing mechanisms. Nature communications 11 (1) (2020)
William T Ireland, Suzannah M Beeler, Emanuel Flores-Bautista, Nicholas S McCarty, Tom Röschinger, Nathan M Belliveau, Michael J Sweredoski, Annie Moradian, Justin B Kinney, Rob Phillips
Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time. eLife 9 (2020)
Talitha L Forcier, Andalus Ayaz, Manraj S Gill, Daniel Jones, Rob Phillips, Justin B Kinney
Measuring cis-regulatory energetics in living cells using allelic manifolds. eLife 7 (2018)
Rhys M Adams, Thierry Mora, Aleksandra M Walczak, Justin B Kinney
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves. eLife 5 (2016)

Justin B Kinney.css-eqlu8i{font-size:small;padding-left:4px;} (J B Kinney)

Publication Activity (10 Years)

Top Topics

Top Venues

Justin B Kinney (J B Kinney)