Thierry Mora

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 47

Top Topics

Genome Wide Association

Immune Response

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Vadim K Karnaukhov, Anne-Laure Le Gac, Linda Bilonda Mutala, Aurelie Darbois-Delahousse, Laetitia Perrin, Francois Legoux, Aleksandra M Walczak, Thierry Mora, Olivier Lantz
Innate-like T cell subset commitment in the murine thymus is independent of TCR characteristics and occurs during proliferation. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Vadim K Karnaukhov, Anne-Laure Le Gac, Linda Bilonda Mutala, Aurelie Darbois-Delahousse, Laetitia Perrin, Francois Legoux, Aleksandra M Walczak, Thierry Mora, Olivier Lantz
Innate-like T cell subset commitment in the murine thymus is independent of TCR characteristics and occurs during proliferation. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Maria Francesca Abbate, Thomas Dupic, Emmanuelle Vigne, Melody A Shahsavarian, Aleksandra M Walczak, Thierry Mora
Computational detection of antigen-specific B cell receptors following immunization. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Barthelemy Meynard-Piganeau, Christoph Feinauer, Martin Weigt, Aleksandra M Walczak, Thierry Mora
TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes. Proceedings of the National Academy of Sciences of the United States of America 121 (24) (2024)
Vadim K Karnaukhov, Anne-Laure Le Gac, Linda Bilonda Mutala, Aurelie Darbois-Delahousse, Laetitia Perrin, Francois Legoux, Aleksandra M Walczak, Thierry Mora, Olivier Lantz
Innate-like T cell subset commitment in the murine thymus is independent of TCR characteristics and occurs during proliferation. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Benoît Manfroi, Bui Thi Cuc, Aurélien Sokal, Alexis Vandenberghe, Sarah Temmam, Mikaël Attia, Mohamed El Behi, Francesco Camaglia, Ngan Thu Nguyen, Jelka Pohar, Layale Salem-Wehbe, Valentine Pottez-Jouatte, Sibyline Borzakian, Narcisse Elenga, Caroline Galeotti, Guillaume Morelle, Camille de Truchis de Lays, Michaela Semeraro, Anne-Sophie Romain, Mélodie Aubart, Naim Ouldali, Florence Mahuteau-Betzer, Claire Beauvineau, Elsa Amouyal, Romain Berthaud, Célia Crétolle, Marc Duval Arnould, Albert Faye, Mathie Lorrot, Grégoire Benoist, Nelly Briand, Marie Courbebaisse, Roland Martin, Peter Van Endert, Jean-Sébastien Hulot, Anne Blanchard, Eric Tartour, Maria C Leite-de-Moraes, Guillaume Lezmi, Mickael Ménager, Marine Luka, Claude-Agnès Reynaud, Jean-Claude Weill, Laetitia Languille, Marc Michel, Pascal Chappert, Thierry Mora, Aleksandra M Walczak, Marc Eloit, Petra Bacher, Alexander Scheffold, Matthieu Mahevas, Isabelle Sermet-Gaudelus, Simon Fillatreau
Preschool-age children maintain a distinct memory CD4 + T cell and memory B cell response after SARS-CoV-2 infection. Science translational medicine 16 (765) (2024)
Barthelemy Meynard-Piganeau, Christoph Feinauer, Martin Weigt, Aleksandra M Walczak, Thierry Mora
TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes. Proceedings of the National Academy of Sciences of the United States of America 121 (24) (2024)
Maria Francesca Abbate, Thomas Dupic, Emmanuelle Vigne, Melody A Shahsavarian, Aleksandra M Walczak, Thierry Mora
Computational detection of antigen-specific B cell receptors following immunization. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Vadim K Karnaukhov, Anne-Laure Le Gac, Linda Bilonda Mutala, Aurelie Darbois-Delahousse, Laetitia Perrin, Francois Legoux, Aleksandra M Walczak, Thierry Mora, Olivier Lantz
Innate-like T cell subset commitment in the murine thymus is independent of TCR characteristics and occurs during proliferation. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Barthelemy Meynard-Piganeau, Christoph Feinauer, Martin Weigt, Aleksandra M Walczak, Thierry Mora
TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes. Proceedings of the National Academy of Sciences of the United States of America 121 (24) (2024)
Maria Francesca Abbate, Thomas Dupic, Emmanuelle Vigne, Melody A Shahsavarian, Aleksandra M Walczak, Thierry Mora
Computational detection of antigen-specific B cell receptors following immunization. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Maria Ruiz Ortega, Mikhail V Pogorelyy, Anastasia A Minervina, Paul G Thomas, Aleksandra M Walczak, Thierry Mora
Learning predictive signatures of HLA type from T-cell repertoires. bioRxiv : the preprint server for biology (2024)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Xiaowen Chen, Faustine Ginoux, Martin Carbo-Tano, Thierry Mora, Aleksandra M Walczak, Claire Wyart
Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. eLife 12 (2023)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Xiaowen Chen, Faustine Ginoux, Martin Carbo-Tano, Thierry Mora, Aleksandra M Walczak, Claire Wyart
Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. eLife 12 (2023)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Xiaowen Chen, Faustine Ginoux, Martin Carbo-Tano, Thierry Mora, Aleksandra M Walczak, Claire Wyart
Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. eLife 12 (2023)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Xiaowen Chen, Faustine Ginoux, Martin Carbo-Tano, Thierry Mora, Aleksandra M Walczak, Claire Wyart
Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. eLife 12 (2023)
Xiaowen Chen, Faustine Ginoux, Martin Carbo-Tano, Thierry Mora, Aleksandra M Walczak, Claire Wyart
Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. eLife 12 (2023)
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benjamin M Chain, Thierry Mora, Aleksandra M Walczak, Nir Friedman
Quantifying changes in the T cell receptor repertoire during thymic development. eLife 12 (2023)
Barbara Bravi, Andrea Di Gioacchino, Jorge Fernandez-de-Cossio-Diaz, Aleksandra M Walczak, Thierry Mora, Simona Cocco, Remi Monasson
A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity. eLife 12 (2023)
Paul Gueguen, Christina Metoikidou, Thomas Dupic, Myriam Lawand, Christel Goudot, Sylvain Baulande, Sonia Lameiras, Olivier Lantz, Nicolas Girard, Agathe Seguin-Givelet, Marine Lefevre, Thierry Mora, Aleksandra M Walczak, Joshua J Waterfall, Sebastian Amigorena
Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in lung cancer. Science immunology 6 (55) (2022)
Cosimo Lupo, Natanael Spisak, Aleksandra M Walczak, Thierry Mora
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. PLoS computational biology 18 (6) (2022)
Barbara Bravi, Vinod P Balachandran, Benjamin D Greenbaum, Aleksandra M Walczak, Thierry Mora, Remi Monasson, Simona Cocco
Probing T-cell response by sequence-based probabilistic modeling. PLoS computational biology 17 (9) (2021)
Judith Miné-Hattab, Mathias Heltberg, Marie Villemeur, Chloé Guedj, Thierry Mora, Aleksandra M Walczak, Maxime Dahan, Angela Taddei
Single molecule microscopy reveals key physical features of repair foci in living cells. eLife 10 (2021)
Angela M Phillips, Katherine R Lawrence, Alief Moulana, Thomas Dupic, Jeffrey Chang, Milo S Johnson, Ivana Cvijovic, Thierry Mora, Aleksandra M Walczak, Michael M Desai
Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies. eLife 10 (2021)
Anastasia A Minervina, Ekaterina A Komech, Aleksei Titov, Meriem Bensouda Koraichi, Elisa Rosati, Ilgar Z Mamedov, Andre Franke, Grigory A Efimov, Dmitriy M Chudakov, Thierry Mora, Aleksandra M Walczak, Yury B Lebedev, Mikhail V Pogorelyy
Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection. eLife 10 (2021)
Thomas Dupic, Meriem Bensouda Koraichi, Anastasia A Minervina, Mikhail V Pogorelyy, Thierry Mora, Aleksandra M Walczak
Immune fingerprinting through repertoire similarity. PLoS genetics 17 (1) (2021)
Mathias L Heltberg, Judith Miné-Hattab, Angela Taddei, Aleksandra M Walczak, Thierry Mora
Physical observables to determine the nature of membrane-less cellular sub-compartments. eLife 10 (2021)
Vedant Sachdeva, Thierry Mora, Aleksandra M Walczak, Stephanie E Palmer
Optimal prediction with resource constraints using the information bottleneck. PLoS computational biology 17 (3) (2021)
Maximilian Puelma Touzel, Aleksandra M Walczak, Thierry Mora
Inferring the immune response from repertoire sequencing. PLoS computational biology 16 (4) (2020)
Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra M Walczak, Yuval Elhanati
Population variability in the generation and selection of T-cell repertoires. PLoS computational biology 16 (12) (2020)
Anastasia A Minervina, Mikhail V Pogorelyy, Ekaterina A Komech, Vadim K Karnaukhov, Petra Bacher, Elisa Rosati, Andre Franke, Dmitriy M Chudakov, Ilgar Z Mamedov, Yury B Lebedev, Thierry Mora, Aleksandra M Walczak
Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones. eLife 9 (2020)
Thomas Dupic, Quentin Marcou, Aleksandra M Walczak, Thierry Mora
Genesis of the αβ T-cell receptor. PLoS computational biology 15 (3) (2019)
Mikhail V Pogorelyy, Anastasia A Minervina, Mikhail Shugay, Dmitriy M Chudakov, Yury B Lebedev, Thierry Mora, Aleksandra M Walczak
Detecting T cell receptors involved in immune responses from single repertoire snapshots. PLoS biology 17 (6) (2019)
Jacopo Marchi, Michael Lässig, Thierry Mora, Aleksandra M Walczak
Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems. Pathogens (Basel, Switzerland) 8 (3) (2019)
Jacopo Marchi, Ezequiel A Galpern, Rocio Espada, Diego U Ferreiro, Aleksandra M Walczak, Thierry Mora
Size and structure of the sequence space of repeat proteins. PLoS computational biology 15 (8) (2019)
Ulisse Ferrari, Christophe Gardella, Olivier Marre, Thierry Mora
Closed-Loop Estimation of Retinal Network Sensitivity by Local Empirical Linearization. eNeuro 4 (6) (2018)
Nicholas A Rossi, Thierry Mora, Aleksandra M Walczak, Mary J Dunlop
Active degradation of MarA controls coordination of its downstream targets. PLoS computational biology 14 (12) (2018)
Mikhail V Pogorelyy, Anastasia A Minervina, Dmitriy M Chudakov, Ilgar Z Mamedov, Yuri B Lebedev, Thierry Mora, Aleksandra M Walczak
Method for identification of condition-associated public antigen receptor sequences. eLife 7 (2018)
Mikhail V Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L Sycheva, Ekaterina A Komech, Vadim I Nazarov, Olga V Britanova, Dmitriy M Chudakov, Ilgar Z Mamedov, Yury B Lebedev, Thierry Mora, Aleksandra M Walczak
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS computational biology 13 (7) (2017)
Christophe Gardella, Olivier Marre, Thierry Mora
A Tractable Method for Describing Complex Couplings between Neurons and Population Rate. eNeuro 3 (4) (2016)
Rhys M Adams, Thierry Mora, Aleksandra M Walczak, Justin B Kinney
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves. eLife 5 (2016)