Jack Kuipers

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 14

Top Topics

Acute Myeloid Leukemia

Systematic Review

Top Venues

PLoS computational biology

Nature communications

Psychological medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Xiang Ge Luo, Jack Kuipers, Niko Beerenwinkel
Joint inference of exclusivity patterns and recurrent trajectories from tumor mutation trees. Nature communications 14 (1) (2023)
Giusi Moffa, Jack Kuipers, Elizabeth Kuipers, Sally McManus, Paul Bebbington
Sexual abuse and psychotic phenomena: a directed acyclic graph analysis of affective symptoms using English national psychiatric survey data. Psychological medicine (2023)
Etienne Sollier, Jack Kuipers, Koichi Takahashi, Niko Beerenwinkel, Katharina Jahn
COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data. Nature communications 14 (1) (2023)
Anne Bertolini, Michael Prummer, Mustafa Anil Tuncel, Ulrike Lischetti, María Lourdes Rosano-González, Jack Kuipers, Daniel Johannes Stekhoven, null null, Niko Beerenwinkel, Franziska Singer
scAmpi-A versatile pipeline for single-cell RNA-seq analysis from basics to clinics. PLoS computational biology 18 (6) (2022)
Polina Suter, Eva Dazert, Jack Kuipers, Charlotte C K Ng, Tuyana Boldanova, Michael N Hall, Markus H Heim, Niko Beerenwinkel
Multi-omics subtyping of hepatocellular carcinoma patients using a Bayesian network mixture model. PLoS computational biology 18 (9) (2022)
Susana Posada Céspedes, Gert U van Zyl, Hesam Montazeri, Jack Kuipers, Soo-Yon Rhee, Roger D Kouyos, Huldrych F Gunthard, Niko Beerenwinkel
Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS computational biology 17 (9) (2021)
Jack Kuipers, Ariane L Moore, Katharina Jahn, Peter Schraml, Feng Wang, Kiyomi Morita, P Andrew Futreal, Koichi Takahashi, Christian Beisel, Holger Moch, Niko Beerenwinkel
Statistical tests for intra-tumour clonal co-occurrence and exclusivity. PLoS computational biology 17 (12) (2021)