Andrew J Gentles (A J Gentles, Andrew Gentles)

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 32

Top Topics

Acute Myeloid Leukemia

Squamous Cell Carcinoma

Gene Expression

Lipopolysaccharide Induced

Top Venues

Nature communications

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia 38 (6) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Corrine A Nief, Phoebe M Hammer, Aihui Wang, Vivek Charu, Amina Tanweer, Babak Litkouhi, Elizabeth A Kidd, Andrew J Gentles, Brooke E Howitt
Endometrioid Endometrial RNA Index Predicts Recurrence in Stage I Patients. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia 38 (6) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia 38 (6) (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia 38 (6) (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia 38 (6) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia (2024)
Corrine A Nief, Phoebe M Hammer, Aihui Wang, Vivek Charu, Amina Tanweer, Babak Litkouhi, Elizabeth A Kidd, Andrew J Gentles, Brooke E Howitt
Endometrioid Endometrial RNA Index Predicts Recurrence in Stage I Patients. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (13) (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Ece Canan Sayitoglu, Bogdan A Luca, Allison Paige Boss, Benjamin Craig Thomas, Robert Arthur Freeborn, Molly Javier Uyeda, Pauline Ping Chen, Yusuke Nakauchi, Colin Waichler, Norman J Lacayo, Rosa Bacchetta, Ravindra Majeti, Andrew J Gentles, Alma-Martina Cepika, Maria Grazia Roncarolo
AML/T cell interactomics uncover correlates of patient outcomes and the key role of ICAM1 in T cell killing of AML. Leukemia (2024)
Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde A Miles, Robert L Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi, Ravindra Majeti
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Leukemia 38 (7) (2024)
Ravindra Majeti, Matthew Schwede, Katharina Jahn, Jack Kuipers, Linde Miles, Robert Bowman, Troy Robinson, Ken Furudate, Hidetaka Uryu, Tomoyuki Tanaka, Kumiko Chino, Asiri Saumya Ediriwickrema, Brooks A Benard, Andrew J Gentles, Ross L Levine, Niko Beerenwinkel, Koichi Takahashi
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity. Research square (2023)
Victoria G Hernandez, Kendra J Lechtenberg, Todd C Peterson, Li Zhu, Tawaun A Lucas, Justice O Owah, Alanna I Dorsey, Andrew J Gentles, Marion S Buckwalter
Translatome analysis reveals microglia and astrocytes to be distinct regulators of inflammation in the hyperacute and acute phases after stroke. bioRxiv : the preprint server for biology (2023)
Victoria G Hernandez, Kendra J Lechtenberg, Todd C Peterson, Li Zhu, Tawaun A Lucas, Karen P Bradshaw, Justice O Owah, Alanna I Dorsey, Andrew J Gentles, Marion S Buckwalter
Translatome analysis reveals microglia and astrocytes to be distinct regulators of inflammation in the hyperacute and acute phases after stroke. Glia (2023)
Milad R Vahid, Erin L Brown, Chloé Beate Steen, Wubing Zhang, Hyun Soo Jeon, Minji Kang, Andrew J Gentles, Aaron M Newman
High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE. Nature biotechnology (2023)
Almudena Espín-Pérez, Kevin Brennan, Asiri Saumya Ediriwickrema, Olivier Gevaert, Izidore S Lossos, Andrew J Gentles
Peripheral blood DNA methylation profiles predict future development of B-cell Non-Hodgkin Lymphoma. NPJ precision oncology 6 (1) (2022)
Weiruo Zhang, Irene Li, Nathan E Reticker-Flynn, Zinaida Good, Serena Chang, Nikolay Samusik, Saumyaa Saumyaa, Yuanyuan Li, Xin Maizie Zhou, Rachel Liang, Christina S Kong, Quynh-Thu Le, Andrew J Gentles, John B Sunwoo, Garry P Nolan, Edgar G Engleman, Sylvia K Plevritis
Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA. Nature methods 19 (6) (2022)
Brooks A Benard, Logan B Leak, Armon Azizi, Daniel Thomas, Andrew J Gentles, Ravindra Majeti
Clonal architecture predicts clinical outcomes and drug sensitivity in acute myeloid leukemia. Nature communications 12 (1) (2021)
Kyuho Han, Sarah E Pierce, Amy Li, Kaitlyn Spees, Grace R Anderson, José A Seoane, Yuan-Hung Lo, Michael Dubreuil, Micah Olivas, Roarke A Kamber, Michael Wainberg, Kaja Kostyrko, Marcus R Kelly, Maryam Yousefi, Scott W Simpkins, David Yao, Keonil Lee, Calvin J Kuo, Peter K Jackson, E Alejandro Sweet-Cordero, Anshul Kundaje, Andrew J Gentles, Christina Curtis, Monte M Winslow, Michael C Bassik
CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities. Nature 580 (7801) (2020)
Michael Iv, Xiaobai Liu, Jonathan Lavezo, Andrew J Gentles, R Ghanem, S Lummus, Donald E Born, Scott G Soltys, Seema Nagpal, R Thomas, L Recht, Nancy Fischbein
Perfusion MRI-Based Fractional Tumor Burden Differentiates between Tumor and Treatment Effect in Recurrent Glioblastomas and Informs Clinical Decision-Making. AJNR. American journal of neuroradiology 40 (10) (2019)
Aaron M Newman, Chloé B Steen, Chih Long Liu, Andrew J Gentles, Aadel A Chaudhuri, Florian Scherer, Michael S Khodadoust, Mohammad S Esfahani, Bogdan A Luca, David Steiner, Maximillian Diehn, Ash A Alizadeh
Determining cell type abundance and expression from bulk tissues with digital cytometry. Nature biotechnology 37 (7) (2019)
Brooks Benard, Andrew J Gentles, Thomas Köhnke, Ravindra Majeti, Daniel Thomas
Data mining for mutation-specific targets in acute myeloid leukemia. Leukemia 33 (4) (2019)
Kevin Brennan, June Ho Shin, Joshua K Tay, Marcos Prunello, Andrew J Gentles, John B Sunwoo, Olivier Gevaert
NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma. Scientific reports 7 (1) (2017)
Aaron M Newman, Chih Long Liu, Michael R Green, Andrew J Gentles, Weiguo Feng, Yue Xu, Chuong D Hoang, Maximilian Diehn, Ash A Alizadeh
Robust enumeration of cell subsets from tissue expression profiles. Nature methods 12 (5) (2015)