Jacob Beal

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 27

Top Venues

ACS synthetic biology

Journal of integrative bioinformatics

Synthetic biology (Oxford, England)

PloS one

Raytheon BBN Technologies

Massachusetts Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Raytheon BBN Technologies

United States

Scientist :: Information and Knowledge Technologies

Massachusetts Institute of Technology

United States

Postdoctoral Associate :: EECS

Education History

Massachusetts Institute of Technology

United States

PHD :: EECS

Publications

Jacob Beal, Vinoo Selvarajah, Gaël Chambonnier, Traci Haddock, Alejandro Vignoni, Gonzalo Vidal, Nicholas Roehner
Standardized Representation of Parts and Assembly for Build Planning. ACS synthetic biology (2023)
Breschine Cummins, Justin D Vrana, Robert C Moseley, Hamed Eramian, Anastasia Deckard, Pedro Fontanarossa, Daniel Bryce, Mark Weston, George Zheng, Joshua Nowak, Francis C Motta, Mohammed Eslami, Kara Layne Johnson, Robert P Goldman, Chris J Myers, Tessa Johnson, Matthew W Vaughn, Niall Gaffney, Joshua Urrutia, Shweta Gopaulakrishnan, Vanessa Biggers, Trissha R Higa, Lorraine A Mosqueda, Marcio Gameiro, Tomáš Gedeon, Konstantin Mischaikow, Jacob Beal, Bryan A Bartley, Tom Mitchell, Tramy T Nguyen, Nicholas Roehner, Steven B Haase
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic biology (Oxford, England) 8 (1) (2023)
Ibrahim Aldulijan, Jacob Beal, Sonja Billerbeck, Jeff Bouffard, Gaël Chambonnier, Nikolaos Ntelkis, Isaac Guerreiro, Martin Holub, Paul Ross, Vinoo Selvarajah, Noah Sprent, Gonzalo Vidal, Alejandro Vignoni
Functional Synthetic Biology. Synthetic biology (Oxford, England) 8 (1) (2023)
Daniel Bryce, Robert P Goldman, Matthew DeHaven, Jacob Beal, Bryan A Bartley, Tramy T Nguyen, Nicholas Walczak, Mark Weston, George Zheng, Josh Nowak, Peter Lee, Joe Stubbs, Niall Gaffney, Matthew W Vaughn, Chris John Myers, Robert C Moseley, Steven Haase, Anastasia Deckard, Bree Cummins, Nick Leiby
Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis. ACS synthetic biology 11 (2) (2022)
Tom Mitchell, Jacob Beal, Bryan A Bartley
pySBOL3: SBOL3 for Python Programmers. ACS synthetic biology 11 (7) (2022)
Robert P Goldman, Robert Moseley, Nicholas Roehner, Breschine Cummins, Justin D Vrana, Katie J Clowers, Daniel Bryce, Jacob Beal, Matthew DeHaven, Joshua Nowak, Trissha Higa, Vanessa Biggers, Peter Lee, Jeremy P Hunt, Lorraine Mosqueda, Steven B Haase, Mark Weston, George Zheng, Anastasia Deckard, Shweta Gopaulakrishnan, Joseph F Stubbs, Niall I Gaffney, Matthew W Vaughn, Narendra Maheshri, Ekaterina Mikhalev, Bryan A Bartley, Richard Markeloff, Tom Mitchell, Tramy Nguyen, Daniel Sumorok, Nicholas Walczak, Chris Myers, Zach Zundel, Benjamin Hatch, James Scholz, John Colonna-Romano
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments. Synthetic biology (Oxford, England) 7 (1) (2022)
Helen Scott, Dashan Sun, Jacob Beal, Samira Kiani
Simulation-Based Engineering of Time-Delayed Safety Switches for Safer Gene Therapies. ACS synthetic biology 11 (5) (2022)
Jacob Beal, Cheryl A Telmer, Alejandro Vignoni, Yadira Boada, Geoff S Baldwin, Liam Hallett, Taeyang Lee, Vinoo Selvarajah, Sonja Billerbeck, Bradley Brown, Guo-Nan Cai, Liang Cai, Edward Eisenstein, Daisuke Kiga, David Ross, Nina Alperovich, Noah Sprent, Jaclyn Thompson, Eric M Young, Drew Endy, Traci Haddock-Angelli
Multicolor plate reader fluorescence calibration. Synthetic biology (Oxford, England) 7 (1) (2022)
Jacob Beal, Brian Teague, John T Sexton, Sebastian Castillo-Hair, Nicholas A DeLateur, Meher Samineni, Jeffrey J Tabor, Ron Weiss, null null
Meeting Measurement Precision Requirements for Effective Engineering of Genetic Regulatory Networks. ACS synthetic biology 11 (3) (2022)
Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox, Angel Goñi Moreno, Thomas Gorochowski, Raik Grunberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novere, Zachary Palchick, Matthew Pocock, Nicholas Roehner, Herbert Sauro, James Scott-Brown, John T Sexton, Guy-Bart Stan, Jeffrey J Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris Myers
Synthetic biology open language visual (SBOL Visual) version 2.3. Journal of integrative bioinformatics 18 (3) (2021)
Hasan Baig, Pedro Fontanarossa, James McLaughlin, James Scott-Brown, Prashant Vaidyanathan, Thomas Gorochowski, Goksel Misirli, Jacob Beal, Chris Myers
Synthetic biology open language visual (SBOL visual) version 3.0. Journal of integrative bioinformatics 18 (3) (2021)
Jacob Beal, Geoff S Baldwin, Natalie G Farny, Markus Gershater, Traci Haddock-Angelli, Russell Buckley-Taylor, Ari Dwijayanti, Daisuke Kiga, Meagan Lizarazo, John Marken, Kim de Mora, Randy Rettberg, Vishal Sanchania, Vinoo Selvarajah, Abigail Sison, Marko Storch, Christopher Thomas Workman, null null
Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs. PloS one 16 (6) (2021)
Jacob Beal, Miles Rogers
Levels of autonomy in synthetic biology engineering. Molecular systems biology 16 (12) (2021)
Göksel Mısırlı, Jacob Beal, Thomas E Gorochowski, Guy-Bart V Stan, Anil Wipat, Chris John Myers
SBOL Visual 2 Ontology. ACS synthetic biology 9 (4) (2020)
Bradley Brown, Bryan A Bartley, Jacob Beal, Jasmine E Bird, Ángel Goñi-Moreno, James Alastair McLaughlin, Göksel Mısırlı, Nicholas Roehner, David James Skelton, Chueh Loo Poh, Irina Dana Ofiteru, Katherine James, Anil Wipat
Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL). ACS synthetic biology 9 (9) (2020)
Jacob Beal, Natalie G Farny, Traci Haddock-Angelli, Vinoo Selvarajah, Geoff S Baldwin, Russell Buckley-Taylor, Markus Gershater, Daisuke Kiga, John Marken, Vishal Sanchania, Abigail Sison, Christopher Thomas Workman, null null
Robust estimation of bacterial cell count from optical density. Communications biology 3 (1) (2020)
Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox, Angel Goñi Moreno, Thomas Gorochowski, Raik Grunberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novere, Zachary Palchick, Matthew Pocock, Nicholas Roehner, Herbert Sauro, James Scott-Brown, John T Sexton, Guy-Bart Stan, Jeffrey J Tabor, Marta Vazquez Vilar, Christopher A Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris Myers
Synthetic biology open language visual (SBOL visual) version 2.2. Journal of integrative bioinformatics 17 (2-3) (2020)
Jacob Beal, Natalie G Farny, Traci Haddock-Angelli, Vinoo Selvarajah, Geoff S Baldwin, Russell Buckley-Taylor, Markus Gershater, Daisuke Kiga, John Marken, Vishal Sanchania, Abigail Sison, Christopher Thomas Workman, null null
Author Correction: Robust estimation of bacterial cell count from optical density. Communications biology 3 (1) (2020)
Bryan A Bartley, Jacob Beal, Jonathan R Karr, Elizabeth A Strychalski
Organizing genome engineering for the gigabase scale. Nature communications 11 (1) (2020)
Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan A Bartley, Jacob Beal, Matthew Crowther, Thomas E Gorochowski, Raik Grünberg, Göksel Mısırlı, James Scott-Brown, Ernst Oberortner, Anil Wipat, Chris John Myers
Synthetic biology open language (SBOL) version 3.0.0. Journal of integrative bioinformatics 17 (2-3) (2020)
Jacob Beal, Tramy T Nguyen, Thomas E Gorochowski, Angel Goñi-Moreno, James Scott-Brown, James Alastair McLaughlin, Curtis Madsen, Benjamin Aleritsch, Bryan A Bartley, Shyam Bhakta, Mike Bissell, Sebastian Castillo Hair, Kevin Clancy, Augustin Luna, Nicolas Le Novère, Zach Palchick, Matthew Pocock, Herbert Sauro, John T Sexton, Jeffrey J Tabor, Christopher A Voigt, Zach Zundel, Chris John Myers, Anil Wipat
Communicating Structure and Function in Synthetic Biology Diagrams. ACS synthetic biology 8 (8) (2019)
Curtis Madsen, Angel Goni Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox, Thomas Gorochowski, Raik Grunberg, Augustin Luna, James McLaughlin, Tramy Nguyen, Nicolas Le Novere, Matthew Pocock, Herbert Sauro, James Scott-Brown, John T Sexton, Guy-Bart Stan, Jeffrey J Tabor, Christopher A Voigt, Zach Zundel, Chris Myers, Jacob Beal, Anil Wipat
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. Journal of integrative bioinformatics 16 (2) (2019)
Jacob Beal, Cassandra Overney, Aaron Adler, Fusun Yaman, Lisa Tiberio, Meher Samineni
TASBE Flow Analytics: A Package for Calibrated Flow Cytometry Analysis. ACS synthetic biology 8 (7) (2019)
Curtis Madsen, Angel Goñi Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi, Robert Sidney Cox, Thomas Gorochowski, Raik Grünberg, Chris Macklin, James McLaughlin, Xianwei Meng, Tramy Nguyen, Matthew Pocock, Meher Samineni, James Scott-Brown, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal, Michael Bissell, Kevin Clancy, John H Gennari, Goksel Misirli, Chris Myers, Ernst Oberortner, Herbert Sauro, Anil Wipat
Synthetic Biology Open Language (SBOL) Version 2.3. Journal of integrative bioinformatics 16 (2) (2019)
Jacob Beal, Traci Haddock-Angelli, Geoff Baldwin, Markus Gershater, Ari Dwijayanti, Marko Storch, Kim de Mora, Meagan Lizarazo, Randy Rettberg, null null
Quantification of bacterial fluorescence using independent calibrants. PloS one 13 (6) (2018)
Robert Sidney Cox, Curtis Madsen, James McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew Pocock, Herbert Sauro, John T Sexton, Guy-Bart Stan, Jeffrey J Tabor, Christopher A Voigt, Zach Zundel, Chris Myers, Jacob Beal, Anil Wipat
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. Journal of integrative bioinformatics 15 (1) (2018)
Swati B Carr, Jacob Beal, Douglas M Densmore
Reducing DNA context dependence in bacterial promoters. PloS one 12 (4) (2017)
Samira Kiani, Alejandro Chavez, Marcelle Tuttle, Richard N Hall, Raj Chari, Dmitry Ter-Ovanesyan, Jason Qian, Benjamin W Pruitt, Jacob Beal, Suhani Vora, Joanna Buchthal, Emma J K Kowal, Mohammad R Ebrahimkhani, James J Collins, Ron Weiss, George Church
Cas9 gRNA engineering for genome editing, activation and repression. Nature methods 12 (11) (2015)
Samira Kiani, Jacob Beal, Mohammad R Ebrahimkhani, Jin Huh, Richard N Hall, Zhen Xie, Yinqing Li, Ron Weiss
CRISPR transcriptional repression devices and layered circuits in mammalian cells. Nature methods 11 (7) (2014)

Jacob Beal.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Jacob Beal