Jan Gorodkin

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

Journal of industrial microbiology & biotechnology

NAR genomics and bioinformatics

Nature communications

Nucleic acids research

University of Copenhagen

Technical University of Denmark Center for Biological Sequence Analysis (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen

Denmark

Professor

Education History

Technical University of Denmark Center for Biological Sequence Analysis

Denmark

PHD

Publications

Veerendra P Gadekar, Alexander Welford Munk, Milad Miladi, Alexander Junge, Rolf Backofen, Stefan Ernst Seemann, Jan Gorodkin
Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites. NAR genomics and bioinformatics 6 (3) (2024)
Veerendra P Gadekar, Alexander Welford Munk, Milad Miladi, Alexander Junge, Rolf Backofen, Stefan Ernst Seemann, Jan Gorodkin
Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites. NAR genomics and bioinformatics 6 (3) (2024)
Adrian Sven Geissler, Annaleigh Ohrt Fehler, Line Dahl Poulsen, Enrique González-Tortuero, Thomas Beuchert Kallehauge, Ferhat Alkan, Christian Anthon, Stefan Ernst Seemann, Michael Dolberg Rasmussen, Anne Breüner, Carsten Hjort, Jeppe Vinther, Jan Gorodkin
CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis. Journal of industrial microbiology & biotechnology 50 (1) (2023)
Adrian Sven Geissler, Annaleigh Ohrt Fehler, Line Dahl Poulsen, Enrique González-Tortuero, Thomas Beuchert Kallehauge, Ferhat Alkan, Christian Anthon, Stefan Ernst Seemann, Michael Dolberg Rasmussen, Anne Breüner, Carsten Hjort, Jeppe Vinther, Jan Gorodkin
CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis. Journal of industrial microbiology & biotechnology 50 (1) (2023)
Jacopo Vegni, Ying Sun, Stefan Ernst Seemann, Martina Zappaterra, Roberta Davoli, Stefania Dall'Olio, Jan Gorodkin, Paolo Zambonelli
RNA-Seq Study on the Longissimus thoracis Muscle of Italian Large White Pigs Fed Extruded Linseed with or without Antioxidants and Polyphenols. Animals : an open access journal from MDPI 13 (7) (2023)
Adrian Sven Geissler, Annaleigh Ohrt Fehler, Line Dahl Poulsen, Enrique González-Tortuero, Thomas Beuchert Kallehauge, Ferhat Alkan, Christian Anthon, Stefan Ernst Seemann, Michael Dolberg Rasmussen, Anne Breüner, Carsten Hjort, Jeppe Vinther, Jan Gorodkin
CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis. Journal of industrial microbiology & biotechnology 50 (1) (2023)
Adrian Sven Geissler, Annaleigh Ohrt Fehler, Line Dahl Poulsen, Enrique González-Tortuero, Thomas Beuchert Kallehauge, Ferhat Alkan, Christian Anthon, Stefan Ernst Seemann, Michael Dolberg Rasmussen, Anne Breüner, Carsten Hjort, Jeppe Vinther, Jan Gorodkin
CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis. Journal of industrial microbiology & biotechnology 50 (1) (2023)
Giulia I Corsi, Kunli Qu, Ferhat Alkan, Xiaoguang Pan, Yonglun Luo, Jan Gorodkin
CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context. Nature communications 13 (1) (2022)
Stefan Ernst Seemann, Aashiq H Mirza, Claus H Bang-Berthelsen, Christian Garde, Mikkel Christensen-Dalsgaard, Christopher Thomas Workman, Flemming Pociot, Niels Tommerup, Jan Gorodkin, Walter L Ruzzo
Does rapid sequence divergence preclude RNA structure conservation in vertebrates? Nucleic acids research 50 (5) (2022)
Adrian Sven Geissler, Annaleigh Ohrt Fehler, Line Dahl Poulsen, Enrique González-Tortuero, Thomas Beuchert Kallehauge, Ferhat Alkan, Christian Anthon, Stefan Ernst Seemann, Michael Dolberg Rasmussen, Anne Breüner, Carsten Hjort, Jeppe Vinther, Jan Gorodkin
CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis. Journal of industrial microbiology & biotechnology (2022)
Xiaoguang Pan, Kunli Qu, Hao Yuan, Xi Xiang, Christian Anthon, Liubov Pashkova, Xue Liang, Peng Han, Giulia I Corsi, Fengping Xu, Ping Liu, Jiayan Zhong, Yan Zhou, Tao Ma, Hui Jiang, Junnian Liu, Jian Wang, Niels Jessen, Lars Bolund, Huanming Yang, Xue Liu, George M Church, Jan Gorodkin, Lin Lin, Yonglun Luo
Massively targeted evaluation of therapeutic CRISPR off-targets in cells. Nature communications 13 (1) (2022)
Giulia I Corsi, Veerendra P Gadekar, Jan Gorodkin, Stefan Ernst Seemann
CRISPRroots: on- and off-target assessment of RNA-seq data in CRISPR-Cas9 edited cells. Nucleic acids research (2021)
Xiaoyong Pan, Anne Wenzel, Lars Juhl Jensen, Jan Gorodkin
Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates. PloS one 13 (8) (2018)
Ferhat Alkan, Anne Wenzel, Christian Anthon, Jakob Hull Havgaard, Jan Gorodkin
CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters. Genome biology 19 (1) (2018)
Rebecca Kirsch, Stefan E Seemann, Walter L Ruzzo, Stephen M Cohen, Peter F Stadler, Jan Gorodkin
Identification and characterization of novel conserved RNA structures in Drosophila. BMC genomics 19 (1) (2018)
Xiaoyong Pan, Kai Xiong, Christian Anthon, Poul Hyttel, Kristine Karla Freude, Lars Juhl Jensen, Jan Gorodkin
WebCircRNA: Classifying the Circular RNA Potential of Coding and Noncoding RNA. Genes 9 (11) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jan Gorodkin