Lars Juhl Jensen (Lars J Jensen)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 36

Top Venues

Journal of proteome research

Nucleic acids research

Bioinformatics (Oxford, England)

PLoS computational biology

University of Copenhagen

Technical University of Denmark (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen Feb 01 2009

Denmark

Professor :: Novo Nordisk Foundation Center for Protein Research

European Molecular Biology Laboratory Feb 01 2006 - Jan 31 2009

Germany

Staff Scientist

European Molecular Biology Laboratory Jan 01 2005 - Jan 31 2006

Germany

Scientist

European Molecular Biology Laboratory Jan 01 2003 - Dec 31 2004

Germany

Postdoc

Technical University of Denmark Aug 01 2002 - Dec 31 2002

Denmark

Research Assistant :: Center for Biological Sequence Analysis

Technical University of Denmark Jun 01 1999 - Jul 31 1999

Denmark

Research Assistant :: Center for Biological Sequence Analysis

Education History

Technical University of Denmark Aug 01 1999 - Jul 31 2002

Denmark

PHD :: Center for Biological Sequence Analysis

Technical University of Denmark Center for Biological Sequence Analysis Aug 01 1994 - May 30 1999

Denmark

MSC

Publications

Mikaela Koutrouli, Katerina C Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinformatics (Oxford, England) 40 (2) (2024)
Mikaela Koutrouli, Katerina C Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinformatics (Oxford, England) 40 (2) (2024)
Mikaela Koutrouli, Katerina C Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinformatics (Oxford, England) 40 (2) (2024)
Mikaela Koutrouli, Katerina C Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinformatics (Oxford, England) 40 (2) (2024)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Christina Kjær, Oana Palasca, Guido Barzaghi, Lasse K Bak, Rúna K J Durhuus, Emil Jakobsen, Louise Pedersen, Emil D Bartels, David P D Woldbye, Lars H Pinborg, Lars Juhl Jensen
Differential Expression of the β3 Subunit of Voltage-Gated Ca 2+ Channel in Mesial Temporal Lobe Epilepsy. Molecular neurobiology (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Ulises H Guzman, Henriette Aksnes, Rasmus Ree, Nicolai Krogh, Magnus E Jakobsson, Lars Juhl Jensen, Thomas Arnesen, Jesper Velgaard Olsen
Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae. Nature communications 14 (1) (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, Carlos P Cantalapiedra, Joaquín Giner-Lamia, Daniel R Mende, Rebecca Kirsch, Thomas Rattei, Ivica Letunic, Lars Juhl Jensen, Peer Bork, Christian von Mering, Huerta-Cepas Jaime
eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic acids research (2022)
Nadezhda Tsankova Doncheva, John H Morris, Henrietta Holze, Rebecca Kirsch, Katerina C Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of proteome research (2022)
Nadezhda Tsankova Doncheva, John H Morris, Henrietta Holze, Rebecca Kirsch, Katerina C Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of proteome research 22 (2) (2022)
Nadezhda Tsankova Doncheva, John H Morris, Henrietta Holze, Rebecca Kirsch, Katerina C Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of proteome research 22 (2) (2022)
Anamarija Pfeiffer, Giulia Franciosa, Marie Locard-Paulet, Ilaria Piga, Kristian Reckzeh, Vidyasiri Vemulapalli, Stephen C Blacklow, Kim Theilgaard-Mönch, Lars Juhl Jensen, Jesper Velgaard Olsen
Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD-Driven AML. Cancer research 82 (11) (2022)
Gergely Zahoránszky-Kőhalmi, Vishal B Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A Math, Matthew D Hall, Samuel G Michael, Alexander G Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I Oprea
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. Journal of chemical information and modeling 62 (3) (2022)
Clément Bernard, Marie Locard-Paulet, Cyril Noël, Magalie Duchateau, Quentin Giai Gianetto, Bouziane Moumen, Thomas Rattei, Yann Hechard, Lars Juhl Jensen, Mariette Matondo, Ascel Samba-Louaka
A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment. Nature communications 13 (1) (2022)
Mikaela Koutrouli, John H Morris, Lars Juhl Jensen
U-CIE [/juː 'siː/]: Color encoding of high-dimensional data. Protein science : a publication of the Protein Society 31 (9) (2022)
Nadezhda Tsankova Doncheva, John H Morris, Henrietta Holze, Rebecca Kirsch, Katerina C Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of proteome research 22 (2) (2022)
Alberto Santos, Ana R Colaço, Annelaura B Nielsen, Lili Niu, Maximilian Strauss, Philipp E Geyer, Fabian Coscia, Nicolai J Wewer Albrechtsen, Filip Mundt, Lars Juhl Jensen, Matthias Mann
A knowledge graph to interpret clinical proteomics data. Nature biotechnology 40 (5) (2022)
Nadezhda Tsankova Doncheva, John H Morris, Henrietta Holze, Rebecca Kirsch, Katerina C Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of proteome research 22 (2) (2022)
Marie Locard-Paulet, Oana Palasca, Lars Juhl Jensen
Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies. PLoS computational biology 18 (10) (2022)
Haris Zafeiropoulos, Savvas Paragkamian, Stelios Ninidakis, Georgios A Pavlopoulos, Lars Juhl Jensen, Evangelos Pafilis
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types. Microorganisms 10 (2) (2022)
Nadezhda Tsankova Doncheva, John H Morris, Henrietta Holze, Rebecca Kirsch, Katerina C Nastou, Yesid Cuesta-Astroz, Thomas Rattei, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. Journal of proteome research 22 (2) (2022)
Jakob Nybo Nissen, Joachim Johansen, Rosa Lundbye Allesøe, Casper Kaae Sønderby, Jose Juan Almagro Armenteros, Christopher Heje Grønbech, Lars Juhl Jensen, Henrik Bjørn Nielsen, Thomas Nordahl Petersen, Ole Winther, Simon Rasmussen
Improved metagenome binning and assembly using deep variational autoencoders. Nature biotechnology 39 (5) (2021)
Marie Locard-Paulet, David Bouyssié, Carine Froment, Odile Burlet-Schiltz, Lars Juhl Jensen
Comparing 22 Popular Phosphoproteomics Pipelines for Peptide Identification and Site Localization. Journal of proteome research 19 (3) (2020)
Pernille Søs Hovgaard Jensen, Maja Johansen, Lasse K Bak, Lars Juhl Jensen, Christina Kjær
Yield and Integrity of RNA from Brain Samples are Largely Unaffected by Pre-analytical Procedures. Neurochemical research 46 (3) (2020)
Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen
Alcoholic liver disease: A registry view on comorbidities and disease prediction. PLoS computational biology 16 (9) (2020)
Sune Pletscher-Frankild, Lars Juhl Jensen
Design, implementation, and operation of a rapid, robust named entity recognition web service. Journal of cheminformatics 11 (1) (2019)
Ufuk Kirik, Jan C Refsgaard, Lars Juhl Jensen
Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models. Journal of proteome research 18 (6) (2019)
Nadezhda Tsankova Doncheva, John H Morris, Jan Gorodkin, Lars Juhl Jensen
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data. Journal of proteome research 18 (2) (2018)
David Westergaard, Hans-Henrik Stærfeldt, Christian Tønsberg, Lars Juhl Jensen, Soren Brunak
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. PLoS computational biology 14 (2) (2018)
Helen Victoria Cook, Nadezhda Tsankova Doncheva, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen
Viruses.STRING: A Virus-Host Protein-Protein Interaction Database. Viruses 10 (10) (2018)
Xiaoyong Pan, Kai Xiong, Christian Anthon, Poul Hyttel, Kristine Karla Freude, Lars Juhl Jensen, Jan Gorodkin
WebCircRNA: Classifying the Circular RNA Potential of Coding and Noncoding RNA. Genes 9 (11) (2018)
Meaghan Mackie, Patrick Leopold Rüther, Diana Samodova, Fabiana Di Gianvincenzo, Clara Granzotto, David Lyon, David A Peggie, Helen Howard, Lynne Harrison, Lars Juhl Jensen, Jesper Velgaard Olsen, Enrico Cappellini
Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting. Angewandte Chemie (International ed. in English) 57 (25) (2018)

Lars Juhl Jensen.css-eqlu8i{font-size:small;padding-left:4px;} (Lars J Jensen)

Publication Activity (10 Years)

Top Topics

Top Venues

Lars Juhl Jensen (Lars J Jensen)