Jan Huisken

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 31

Top Topics

Trypanosoma Cruzi

Fluorescence Imaging

Top Venues

Nature communications

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Nicola Gritti, Rory M Power, Alyssa Graves, Jan Huisken
Image restoration of degraded time-lapse microscopy data mediated by near-infrared imaging. Nature methods 21 (2) (2024)
Nicola Gritti, Rory M Power, Alyssa Graves, Jan Huisken
Image restoration of degraded time-lapse microscopy data mediated by near-infrared imaging. Nature methods 21 (2) (2024)
Nicola Gritti, Rory M Power, Alyssa Graves, Jan Huisken
Image restoration of degraded time-lapse microscopy data mediated by near-infrared imaging. Nature methods (2024)
Nicola Gritti, Rory M Power, Alyssa Graves, Jan Huisken
Image restoration of degraded time-lapse microscopy data mediated by near-infrared imaging. Nature methods 21 (2) (2024)
Nicola Gritti, Rory M Power, Alyssa Graves, Jan Huisken
Image restoration of degraded time-lapse microscopy data mediated by near-infrared imaging. Nature methods 21 (2) (2024)
Kurt Weiss, Jan Huisken, Vesselina Bakalov, Michelle Engle, Lauren Gridley, Michelle C Krzyzanowski, Tom Madden, Deborah Maiese, Justin Waterfield, David Williams, Xin Wu, Carol M Hamilton, Wayne Huggins
T-CLEARE: A Pilot Community-Driven Tissue-Clearing Protocol Repository. bioRxiv : the preprint server for biology (2023)
Kayvan Samimi, Danielle E Desa, Wei Lin, Kurt R Weiss, Joe Li, Jan Huisken, Veronika Miskolci, Anna Huttenlocher, Jenu V Chacko, Andreas Velten, Jeremy D Rogers, Kevin W Eliceiri, Melissa C Skala
Light-sheet autofluorescence lifetime imaging with a single-photon avalanche diode array. Journal of biomedical optics 28 (6) (2023)
Karin D Prummel, Helena Lucia Crowell, Susan Nieuwenhuize, Eline C Brombacher, Stephan Daetwyler, Charlotte Soneson, Jelena Kresoja-Rakic, Agnese Kocere, Manuel Ronner, Alexander Ernst, Zahra Labbaf, David E Clouthier, Anthony B Firulli, Hector Sanchez-Iranzo, Sundar Ram Naganathan, Rebecca O'Rourke, Erez Raz, Nadia Mercader, Alexa Burger, Emanuela Felley-Bosco, Jan Huisken, Mark D Robinson, Christian Mosimann
Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma. Nature communications 13 (1) (2022)
Chengjian Zhao, Jonathan Matalonga, Joseph J Lancman, Lu Liu, Chaoxin Xiao, Shiv Kumar, Keith P Gates, Jiaye He, Alyssa Graves, Jan Huisken, Mizuki Azuma, Zhenghao Lu, Chong Chen, Bi-Sen Ding, P Duc Si Dong
Regenerative failure of intrahepatic biliary cells in Alagille syndrome rescued by elevated Jagged/Notch/Sox9 signaling. Proceedings of the National Academy of Sciences of the United States of America 119 (50) (2022)
Paul M Airs, Kathy Vaccaro, Kendra J Gallo, Nathalie Dinguirard, Zachary W Heimark, Nicolas J Wheeler, Jiaye He, Kurt R Weiss, Nathan E Schroeder, Jan Huisken, Mostafa Zamanian
Spatial transcriptomics reveals antiparasitic targets associated with essential behaviors in the human parasite Brugia malayi. PLoS pathogens 18 (4) (2022)
Alexander J Ropelewski, Megan A Rizzo, Jason R Swedlow, Jan Huisken, Pavel Osten, Neda Khanjani, Kurt Weiss, Vesselina Bakalov, Michelle L Engle, Lauren Gridley, Michelle Krzyzanowski, Tom Madden, Deborah Maiese, Meisha Mandal, Justin Waterfield, David Williams, Carol M Hamilton, Wayne Huggins
Standard metadata for 3D microscopy. Scientific data 9 (1) (2022)
Anjalie Schlaeppi, Wilson R Adams, Robert Haase, Jan Huisken, Ryan B MacDonald, Kevin W Eliceiri, Elisabeth C Kugler
Meeting in the Middle: Towards Successful Multidisciplinary Bioimage Analysis Collaboration. Frontiers in bioinformatics 2 (2022)
Ani Michaud, Marcin Leda, Zachary T Swider, Songeun Kim, Jiaye He, Jennifer Landino, Jenna R Valley, Jan Huisken, Andrew B Goryachev, George von Dassow, William M Bement
A versatile cortical pattern-forming circuit based on Rho, F-actin, Ect2, and RGA-3/4. The Journal of cell biology 221 (8) (2022)
Elizabeth M Haynes, Korri H Burnett, Jiaye He, Marcel W Jean-Pierre, Martin Jarzyna, Kevin W Eliceiri, Jan Huisken, Mary C Halloran
KLC4 shapes axon arbors during development and mediates adult behavior. eLife 11 (2022)
John Fadul, Teresa Zulueta-Coarasa, Gloria M Slattum, Nadja M Redd, Mauricio Franco Jin, Michael J Redd, Stephan Daetwyler, Danielle Hedeen, Jan Huisken, Jody Rosenblatt
KRas-transformed epithelia cells invade and partially dedifferentiate by basal cell extrusion. Nature communications 12 (1) (2021)
Johannes Waschke, Mario Hlawitschka, Kerim Anlaş, Vikas Trivedi, Ingo Roeder, Jan Huisken, Nico Scherf
linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser. PLoS computational biology 17 (11) (2021)
Kurt R Weiss, Fabian F Voigt, Douglas P Shepherd, Jan Huisken
Tutorial: practical considerations for tissue clearing and imaging. Nature protocols 16 (6) (2021)
Nandini Asokan, Stephan Daetwyler, Stefanie N Bernas, Christopher Schmied, Steffen Vogler, Katrin Lambert, Manja Wobus, Martin Wermke, Gerd Kempermann, Jan Huisken, Michael Brand, Martin Bornhäuser
Long-term in vivo imaging reveals tumor-specific dissemination and captures host tumor interaction in zebrafish xenografts. Scientific reports 10 (1) (2020)
Peter F Favreau, Jiaye He, Daniel A Gil, Dustin A Deming, Jan Huisken, Melissa C Skala
Label-free redox imaging of patient-derived organoids using selective plane illumination microscopy. Biomedical optics express 11 (5) (2020)
Jiaye He, Jan Huisken
Image quality guided smart rotation improves coverage in microscopy. Nature communications 11 (1) (2020)
Benjamin Schmid, Philipp Tripal, Tina Fraaß, Christina Kersten, Barbara Ruder, Anika Grüneboom, Jan Huisken, Ralf Palmisano
3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax. Nature methods 16 (4) (2019)
Gopi Shah, Konstantin Thierbach, Benjamin Schmid, Johannes Waschke, Anna Reade, Mario Hlawitschka, Ingo Roeder, Nico Scherf, Jan Huisken
Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish. Nature communications 10 (1) (2019)
Karin D Prummel, Christopher Hess, Susan Nieuwenhuize, Hugo J Parker, Katherine W Rogers, Iryna Kozmikova, Claudia Racioppi, Eline C Brombacher, Anna Czarkwiani, Dunja Knapp, Sibylle Burger, Elena Chiavacci, Gopi Shah, Alexa Burger, Jan Huisken, Maximina Hee Yun, Lionel A Christiaen, Zbynek Kozmik, Patrick Müller, Marianne Bronner, Robb Krumlauf, Christian Mosimann
A conserved regulatory program initiates lateral plate mesoderm emergence across chordates. Nature communications 10 (1) (2019)
Naomi D Chrispijn, Dei M Elurbe, Michaela Mickoleit, Marco Aben, Dennis E M de Bakker, Karolina M Andralojc, Jan Huisken, Jeroen Bakkers, Leonie M Kamminga
Loss of the Polycomb group protein Rnf2 results in derepression of tbx-transcription factors and defects in embryonic and cardiac development. Scientific reports 9 (1) (2019)
Stephan Daetwyler, Ulrik Günther, Carl D Modes, Kyle I S Harrington, Jan Huisken
Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish. Development (Cambridge, England) 146 (6) (2019)
Anastasia Felker, Karin D Prummel, Anne Margarete Merks, Michaela Mickoleit, Eline C Brombacher, Jan Huisken, Daniela Panakova, Christian Mosimann
Continuous addition of progenitors forms the cardiac ventricle in zebrafish. Nature communications 9 (1) (2018)
Rory M Power, Jan Huisken
Adaptable, illumination patterning light sheet microscopy. Scientific reports 8 (1) (2018)
Frederic Berndt, Gopi Shah, Rory M Power, Jan Brugués, Jan Huisken
Dynamic and non-contact 3D sample rotation for microscopy. Nature communications 9 (1) (2018)
Michael Weber, Nico Scherf, Alexander M Meyer, Daniela Panakova, Peter Kohl, Jan Huisken
Cell-accurate optical mapping across the entire developing heart. eLife 6 (2017)
Rory M Power, Jan Huisken
A guide to light-sheet fluorescence microscopy for multiscale imaging. Nature methods 14 (4) (2017)
Nico Scherf, Jan Huisken
The smart and gentle microscope. Nature biotechnology 33 (8) (2016)
Emmanuel G Reynaud, Jan Peychl, Jan Huisken, Pavel Tomancak
Guide to light-sheet microscopy for adventurous biologists. Nature methods 12 (1) (2015)
Wiebke Jahr, Benjamin Schmid, Christopher Schmied, Florian O Fahrbach, Jan Huisken
Hyperspectral light sheet microscopy. Nature communications 6 (2015)
Michaela Mickoleit, Benjamin Schmid, Michael Weber, Florian O Fahrbach, Sonja Hombach, Sven Reischauer, Jan Huisken
High-resolution reconstruction of the beating zebrafish heart. Nature methods 11 (9) (2014)