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Jeroen de Ridder (J de Ridder)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 18

Top Venues

Nature communications

NPJ genomic medicine

Nature protocols

PeerJ

University Medical Center Utrecht

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University Medical Center Utrecht May 1o 2016

Netherlands

PI :: Center for Molecular Medicine - Genetics

Publications

Alessio Marcozzi, Myrthe Jager, Martin Elferink, Roy Straver, Joost H van Ginkel, Boris Peltenburg, Li-Ting Chen, Ivo Renkens, Joyce van Kuik, Chris Terhaard, Remco de Bree, Lot A Devriese, Stefan M Willems, Wigard P Kloosterman, Jeroen de Ridder
Author Correction: Accurate detection of circulating tumor DNA using nanopore consensus sequencing. NPJ genomic medicine 8 (1) (2023)
Anouk C de Jong, Alexandra Danyi, Job van Riet, Ronald de Wit, Martin Sjöström, Felix Y Feng, Jeroen de Ridder, Martijn Paul Lolkema
Predicting response to enzalutamide and abiraterone in metastatic prostate cancer using whole-omics machine learning. Nature communications 14 (1) (2023)
Carlo Vermeulen, Marc Pages Gallego, L Kester, Mariëtte E G Kranendonk, P Wesseling, N Verburg, Philip C De Witt Hamer, E J Kooi, L Dankmeijer, Jasper van der Lugt, K van Baarsen, Eelco Wieger Hoving, Bastiaan B J Tops, Jeroen de Ridder
Ultra-fast deep-learned CNS tumour classification during surgery. Nature (2023)
Joanna von Berg, Michelle Ten Dam, Sander W van der Laan, Jeroen de Ridder
PolarMorphism enables discovery of shared genetic variants across multiple traits from GWAS summary statistics. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Wei Jiao, Gurnit Atwal, Paz Polak, Rosa Karlic, Edwin Cuppen, null null, Alexandra Danyi, Jeroen de Ridder, Carla van Herpen, Martijn Paul Lolkema, Neeltje Steeghs, Gad A Getz, Quaid D Morris, Lincoln D Stein, null null
Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nature communications 13 (1) (2022)
Alexandra Danyi, Myrthe Jager, Jeroen de Ridder
Cancer Type Classification in Liquid Biopsies Based on Sparse Mutational Profiles Enabled through Data Augmentation and Integration. Life (Basel, Switzerland) 12 (1) (2021)
Roger Mulet-Lazaro, Stanley van Herk, Claudia A J Erpelinck-Verschueren, Eric Bindels, Mathijs Arnoud Sanders, Carlo Vermeulen, Ivo Renkens, Peter Valk, Ari M Melnick, Jeroen de Ridder, Michael Rehli, Claudia Gebhard, Ruud Delwel, Bas J Wouters
Allele-specific expression of GATA2 due to epigenetic dysregulation in CEBPA double-mutant AML. Blood 138 (2) (2021)
Alessio Marcozzi, Myrthe Jager, Martin Elferink, Roy Straver, Joost H van Ginkel, Boris Peltenburg, Li-Ting Chen, Ivo Renkens, Joyce van Kuik, Chris Terhaard, Remco de Bree, Lot A Devriese, Stefan M Willems, Wigard P Kloosterman, Jeroen de Ridder
Accurate detection of circulating tumor DNA using nanopore consensus sequencing. NPJ genomic medicine 6 (1) (2021)
Joanna von Berg, Sander W van der Laan, Patrick F McArdle, Rainer Malik, Steven J Kittner, Braxton D Mitchell, Bradford B Worrall, Jeroen de Ridder, Sara L Pulit
Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke. European journal of human genetics : EJHG 28 (7) (2020)
Joske Ubels, Pieter Sonneveld, Martin H van Vliet, Jeroen de Ridder
Gene Networks Constructed Through Simulated Treatment Learning can Predict Proteasome Inhibitor Benefit in Multiple Myeloma. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (22) (2020)
Carlo Vermeulen, Amin Allahyar, Britta A M Bouwman, Peter H L Krijger, Marjon J A M Verstegen, Wouter de Laat, Christian Valdes-Quezada, Ivo Renkens, Roy Straver, Wigard P Kloosterman, Jeroen de Ridder, Wouter de Laat
Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies. Nature protocols 15 (2) (2020)
Wei Jiao, Gurnit Atwal, Paz Polak, Rosa Karlic, Edwin Cuppen, null null, Alexandra Danyi, Jeroen de Ridder, Carla van Herpen, Martijn Paul Lolkema, Neeltje Steeghs, Gad A Getz, Quaid D Morris, Lincoln D Stein, null null
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nature communications 11 (1) (2020)
Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard P Kloosterman, Jeroen de Ridder
sv-callers: a highly portable parallel workflow for structural variant detection in whole-genome sequence data. PeerJ 8 (2020)
Amin Allahyar, Joske Ubels, Jeroen de Ridder
A data-driven interactome of synergistic genes improves network-based cancer outcome prediction. PLoS computational biology 15 (2) (2019)
Franka J Rang, Wigard P Kloosterman, Jeroen de Ridder
From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy. Genome biology 19 (1) (2018)
Joske Ubels, Pieter Sonneveld, Erik H van Beers, Annemiek Broijl, Martin H van Vliet, Jeroen de Ridder
Predicting treatment benefit in multiple myeloma through simulation of alternative treatment effects. Nature communications 9 (1) (2018)
Marleen M Nieboer, Lambert C J Dorssers, Roy Straver, Leendert H J Looijenga, Jeroen de Ridder
TargetClone: A multi-sample approach for reconstructing subclonal evolution of tumors. PloS one 13 (11) (2018)
Amin Allahyar, Carlo Vermeulen, Britta A M Bouwman, Peter H L Krijger, Marjon J A M Verstegen, Geert Geeven, Melissa van Kranenburg, Mark Pieterse, Roy Straver, Judith H I Haarhuis, Kees Jalink, Hans Teunissen, Ivo J Renkens, Wigard P Kloosterman, Benjamin D Rowland, Elzo de Wit, Jeroen de Ridder, Wouter de Laat
Enhancer hubs and loop collisions identified from single-allele topologies. Nature genetics 50 (8) (2018)

Jeroen de Ridder.css-eqlu8i{font-size:small;padding-left:4px;} (J de Ridder)

Publication Activity (10 Years)

Top Topics

Top Venues

Jeroen de Ridder (J de Ridder)