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Jody E Phelan (Jody Phelan)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 24

Top Venues

Scientific reports

Nature communications

PloS one

Emerging microbes & infections

London School of Hygiene and Tropical Medicine

London School of Hygiene and Tropical Medicine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

London School of Hygiene and Tropical Medicine Oct 1o 2017

United Kingdom

Research Fellow :: Pathogen Molecular Biology

Education History

London School of Hygiene and Tropical Medicine Oct 1o 2014 - Oct 1o 2017

United Kingdom

PHD :: Faculty of Infectious and Tropical Disease

Publications

Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Rita Elias, Anton Spadar, Antoni P A Hendrickx, Remy A Bonnin, Laurent Dortet, Margarida Pinto, Jody E Phelan, Isabel Portugal, Susana Campino, Gabriela Jorge da Silva, Taane Gregory Clark, Aida Duarte, João Perdigão
Emergence of KPC-3- and OXA-181-producing ST13 and ST17 Klebsiella pneumoniae in Portugal: genomic insights on national and international dissemination. The Journal of antimicrobial chemotherapy (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Julian Libiseller-Egger, Linfeng Wang, Wouter Deelder, Susana Campino, Taane Gregory Clark, Jody E Phelan
TB-ML-a framework for comparing machine learning approaches to predict drug resistance of Mycobacterium tuberculosis . Bioinformatics advances 3 (1) (2023)
Lennert Verboven, Jody E Phelan, Tim H Heupink, Annelies Van Rie
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. PloS one 17 (12) (2022)
Jody E Phelan, Wouter Deelder, Daniel Ward, Susana Campino, Martin L Hibberd, Taane G Clark
COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data. BMC bioinformatics 23 (1) (2022)
Francesc Coll, Theodore Gouliouris, Sebastian Bruchmann, Jody E Phelan, Kathy E Raven, Taane Gregory Clark, Julian Parkhill, Sharon J Peacock
PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies. Communications biology 5 (1) (2022)
Lennert Verboven, Jody E Phelan, Tim H Heupink, Annelies Van Rie
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. PloS one 17 (12) (2022)
Lennert Verboven, Jody E Phelan, Tim H Heupink, Annelies Van Rie
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. PloS one 17 (12) (2022)
Lennert Verboven, Jody E Phelan, Tim H Heupink, Annelies Van Rie
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. PloS one 17 (12) (2022)
Lennert Verboven, Jody E Phelan, Tim H Heupink, Annelies Van Rie
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. PloS one 17 (12) (2022)
Joao Perdigao, Carla Silva, Fernando Maltez, Diana Machado, Anabela Miranda, Isabel Couto, Paulo Rabna, Paola Florez de Sessions, Jody E Phelan, Arnab Pain, Ruth McNerney, Martin Lloyd Hibberd, Igor Mokrousov, Taane Gregory Clark, Miguel Viveiros, Isabel Portugal
Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing. Emerging microbes & infections 9 (1) (2021)
Prapaporn Srilohasin, Therdsak Prammananan, Kiatichai Faksri, Jody E Phelan, Prapat Suriyaphol, Phalin Kamolwat, Saijai Smithtikarn, Areeya Disratthakit, Sanjib Mani Regmi, Manoon Leechawengwongs, Rick Twee-Hee Ong, Yik Ying Teo, Sissades Tongsima, Taane Gregory Clark, Angkana Chaiprasert
Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype. Emerging microbes & infections 9 (1) (2021)
Ernest Diez Benavente, Emilia Manko, Jody E Phelan, Monica Campos, Debbie Nolder, Diana Fernandez, Gabriel Velez-Tobon, Alberto Tobón Castaño, Jamille Gregório Dombrowski, Claudio R F Marinho, Anna Caroline C Aguiar, Dhelio Batista Pereira, Kanlaya Sriprawat, Francois H Nosten, Robert Moon, Colin J Sutherland, Susana Campino, Taane Gregory Clark
Distinctive genetic structure and selection patterns in Plasmodium vivax from South Asia and East Africa. Nature communications 12 (1) (2021)
Julian Libiseller-Egger, Jody E Phelan, Susana Campino, Fady Mohareb, Taane Gregory Clark
Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers. PLoS computational biology 16 (12) (2020)
Jody E Phelan, Dodge R Lim, Satoshi Mitarai, Paola Florez de Sessions, Ma Angelica A Tujan, Lorenzo T Reyes, Inez Andrea P Medado, Alma G Palparan, Ahmad Nazri Mohamed Naim, Song Jie, Edelwisa Segubre-Mercado, Beatriz Simoes, Susana Campino, Julius C Hafalla, Yoshiro Murase, Yuta Morishige, Martin L Hibberd, Seiya Kato, Ma Cecilia G Ama, Taane Gregory Clark
Mycobacterium tuberculosis whole genome sequencing provides insights into the Manila strain and drug-resistance mutations in the Philippines. Scientific reports 9 (1) (2019)
Paula J Gomez-Gonzalez, Nuria Andreu, Jody E Phelan, Paola Florez de Sessions, Judith R Glynn, Amelia C Crampin, Susana Campino, Philip D Butcher, Martin L Hibberd, Taane Gregory Clark
An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome. Scientific reports 9 (1) (2019)
Abdul Jabbar, Jody E Phelan, Paola Florez de Sessions, Taj Ali Khan, Hazir Rahman, Sadiq Noor Khan, Daire M Cantillon, Leticia Muraro Wildner, Sajid Ali, Susana Campino, Simon J Waddell, Taane Gregory Clark
Whole genome sequencing of drug resistant Mycobacterium tuberculosis isolates from a high burden tuberculosis region of North West Pakistan. Scientific reports 9 (1) (2019)
Pravech Ajawatanawong, Hideki Yanai, Nat Smittipat, Areeya Disratthakit, Norio Yamada, Reiko Miyahara, Supalert Nedsuwan, Worarat Imasanguan, Pacharee Kantipong, Boonchai Chaiyasirinroje, Jiraporn Wongyai, Supada Plitphonganphim, Pornpen Tantivitayakul, Jody E Phelan, Julian Parkhill, Taane Gregory Clark, Martin L Hibberd, Wuthiwat Ruangchai, Panawun Palittapongarnpim, Tada Juthayothin, Yuttapong Thawornwattana, Wasna Viratyosin, Sissades Tongsima, Surakameth Mahasirimongkol, Katsushi Tokunaga, Prasit Palittapongarnpim
A novel Ancestral Beijing sublineage of Mycobacterium tuberculosis suggests the transition site to Modern Beijing sublineages. Scientific reports 9 (1) (2019)
Stephanie Portelli, Jody E Phelan, David B Ascher, Taane Gregory Clark, Nicholas Furnham
Understanding molecular consequences of putative drug resistant mutations in Mycobacterium tuberculosis. Scientific reports 8 (1) (2018)
Prasit Palittapongarnpim, Pravech Ajawatanawong, Wasna Viratyosin, Nat Smittipat, Areeya Disratthakit, Surakameth Mahasirimongkol, Hideki Yanai, Norio Yamada, Supalert Nedsuwan, Worarat Imasanguan, Pacharee Kantipong, Boonchai Chaiyasirinroje, Jiraporn Wongyai, Licht Toyo-Oka, Jody E Phelan, Julian Parkhill, Taane Gregory Clark, Martin L Hibberd, Wuthiwat Ruengchai, Panawun Palittapongarnpim, Tada Juthayothin, Sissades Tongsima, Katsushi Tokunaga
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. Scientific reports 8 (1) (2018)

Jody E Phelan.css-eqlu8i{font-size:small;padding-left:4px;} (Jody Phelan)

Publication Activity (10 Years)

Top Topics

Top Venues

Jody E Phelan (Jody Phelan)