John P Barton

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 28

Top Venues

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Molecular biology and evolution

eLife

University of California, Riverside

Rutgers The State University of New Jersey (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California, Riverside Jan 01 2018

United States

Assistant Professor :: Physics and Astronomy

Massachusetts Institute of Technology - Dec 31 2017

United States

Postdoctoral Fellow :: Physics; Chemical Engineering; Institute for Medical Engineering and Science

Education History

Rutgers The State University of New Jersey

United States

PHD :: Physics

Duke University

United States

BSC :: Mathematics

Duke University

United States

BSC :: Physics

Publications

Zhenchen Hong, Kai S Shimagaki, John P Barton
popDMS infers mutation effects from deep mutational scanning data. Bioinformatics (Oxford, England) 40 (8) (2024)
Yunxiao Li, John P Barton
Correlated allele frequency changes reveal clonal structure and selection in temporal genetic data. Molecular biology and evolution (2024)
Zhenchen Hong, John P Barton
popDMS infers mutation effects from deep mutational scanning data. bioRxiv : the preprint server for biology (2024)
Yunxiao Li, John P Barton
Correlated Allele Frequency Changes Reveal Clonal Structure and Selection in Temporal Genetic Data. Molecular biology and evolution 41 (4) (2024)
Zhenchen Hong, John P Barton
popDMS infers mutation effects from deep mutational scanning data. bioRxiv : the preprint server for biology (2024)
Kai S Shimagaki, Rebecca M Lynch, John P Barton
Parallel HIV-1 evolutionary dynamics in humans and rhesus macaques who develop broadly neutralizing antibodies. bioRxiv : the preprint server for biology (2024)
Yunxiao Li, John P Barton
Correlated allele frequency changes reveal clonal structure and selection in temporal genetic data. Molecular biology and evolution (2024)
Yirui Gao, John P Barton
A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses. bioRxiv : the preprint server for biology (2024)
Zhenchen Hong, John P Barton
popDMS infers mutation effects from deep mutational scanning data. bioRxiv : the preprint server for biology (2024)
Zhenchen Hong, Kai S Shimagaki, John P Barton
popDMS infers mutation effects from deep mutational scanning data. Bioinformatics (Oxford, England) 40 (8) (2024)
Kai S Shimagaki, Rebecca M Lynch, John P Barton
Parallel HIV-1 evolutionary dynamics in humans and rhesus macaques who develop broadly neutralizing antibodies. bioRxiv : the preprint server for biology (2024)
Yirui Gao, John P Barton
A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses. bioRxiv : the preprint server for biology (2024)
Zhenchen Hong, John P Barton
popDMS infers mutation effects from deep mutational scanning data. bioRxiv : the preprint server for biology (2024)
Yirui Gao, John P Barton
A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses. bioRxiv : the preprint server for biology (2024)
Yunxiao Li, John P Barton
Estimating linkage disequilibrium and selection from allele frequency trajectories. Genetics 223 (3) (2023)
Yunxiao Li, John P Barton
Estimating linkage disequilibrium and selection from allele frequency trajectories. Genetics 223 (3) (2023)
Yawei Qin, Emily M Mace, John P Barton
An inference model gives insights into innate immune adaptation and repertoire diversity. Proceedings of the National Academy of Sciences of the United States of America 120 (38) (2023)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth A Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D Boerckel, Christian Brueffer, James Brian Byrd, Jeremy P Kamil, Jinhui Wang, Ryan Velazquez, Gregory Lee Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana Alves, null null, Anthony Gitter, Casey S Greene
Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure". mSystems 7 (1) (2022)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth A Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, Yuchen Sun, David Mai, Christian Brueffer, James Brian Byrd, Jinhui Wang, Ronan Lordan, Ryan Velazquez, Gregory Lee Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana Alves, null null, Anthony Gitter, Casey S Greene
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. ArXiv (2021)
Dariusz K Murakowski, John P Barton, Lauren Peter, Abishek Chandrashekar, Esther Bondzie, Ang Gao, Dan H Barouch, Arup K Chakraborty
Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques. Proceedings of the National Academy of Sciences of the United States of America 118 (5) (2021)
Syed Faraz Ahmed, Ahmed A Quadeer, John P Barton, Matthew R McKay
Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine. PLoS neglected tropical diseases 14 (9) (2020)
Muhammad Saqib Sohail, Raymond H Y Louie, Matthew R McKay, John P Barton
MPL resolves genetic linkage in fitness inference from complex evolutionary histories. Nature biotechnology 39 (4) (2020)
Victor Ovchinnikov, Joy E Louveau, John P Barton, Martin Karplus, Arup K Chakraborty
Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies. eLife 7 (2018)
Yehuda Z Cohen, Julio Cesar Cetrulo Lorenzi, Lisa Krassnig, John P Barton, Leah Burke, Joy Pai, Ching-Lan Lu, Pilar Mendoza, Thiago Y Oliveira, Christopher Sleckman, Katrina Millard, Allison L Butler, Juan P Dizon, Shiraz A Belblidia, Maggi Witmer-Pack, Irina Shimeliovich, Roy M Gulick, Michael S Seaman, Mila Jankovic, Marina Caskey, Michel C Nussenzweig
Relationship between latent and rebound viruses in a clinical trial of anti-HIV-1 antibody 3BNC117. The Journal of experimental medicine 215 (9) (2018)
Raymond H Y Louie, Kevin J Kaczorowski, John P Barton, Arup K Chakraborty, Matthew R McKay
Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies. Proceedings of the National Academy of Sciences of the United States of America 115 (4) (2018)
Pradeep Bandaru, Neel H Shah, Moitrayee Bhattacharyya, John P Barton, Yasushi Kondo, Joshua C Cofsky, Christine L Gee, Arup K Chakraborty, Tanja Kortemme, Rama Ranganathan, John Kuriyan
Deconstruction of the Ras switching cycle through saturation mutagenesis. eLife 6 (2017)
Julio C C Lorenzi, Yehuda Z Cohen, Lillian B Cohn, Edward F Kreider, John P Barton, Gerald H Learn, Thiago Oliveira, Christy L Lavine, Joshua A Horwitz, Allison Settler, Mila Jankovic, Michael S Seaman, Arup K Chakraborty, Beatrice H Hahn, Marina Caskey, Michel C Nussenzweig
Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA. Proceedings of the National Academy of Sciences of the United States of America 113 (49) (2016)
John P Barton, Nilu Goonetilleke, Thomas C Butler, Bruce D Walker, Andrew J McMichael, Arup K Chakraborty
Relative rate and location of intra-host HIV evolution to evade cellular immunity are predictable. Nature communications 7 (2016)

John P Barton.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

John P Barton