Marouen Ben Guebila

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 18

Top Topics

Network Analysis

Drug Administration

Top Venues

Nucleic acids research

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Enakshi Saha, Viola Fanfani, Panagiotis Mandros, Marouen Ben Guebila, Jonas Fischer, Katherine H Shutta, Dawn L DeMeo, Camila M Lopes-Ramos, John Quackenbush
Bayesian inference of sample-specific coexpression networks. Genome research (2024)
Stefan Schrod, Niklas Lück, Robert Lohmayer, Stefan Solbrig, Dennis Völkl, Tina Wipfler, Katherine H Shutta, Marouen Ben Guebila, Andreas Schäfer, Tim Beißbarth, Helena U Zacharias, Peter J Oefner, John Quackenbush, Michael Altenbuchinger
Spatial Cellular Networks from omics data with SpaCeNet. Genome research (2024)
Enakshi Saha, Viola Fanfani, Panagiotis Mandros, Marouen Ben Guebila, Jonas Fischer, Katherine H Shutta, Dawn L DeMeo, Camila M Lopes-Ramos, John Quackenbush
Bayesian inference of sample-specific coexpression networks. Genome research (2024)
Katherine H Shutta, Deborah A Weighill, Rebekka Burkholz, Marouen Ben Guebila, Dawn L DeMeo, Helena U Zacharias, John Quackenbush, Michael Altenbuchinger
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks. Nucleic acids research 51 (3) (2023)
Katherine H Shutta, Deborah A Weighill, Rebekka Burkholz, Marouen Ben Guebila, Dawn L DeMeo, Helena U Zacharias, John Quackenbush, Michael Altenbuchinger
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks. Nucleic acids research 51 (3) (2023)
Enakshi Saha, Marouen Ben Guebila, Viola Fanfani, Jonas Fischer, Katherine H Shutta, Panagiotis Mandros, Dawn L DeMeo, John Quackenbush, Camila M Lopes-Ramos
Gene regulatory Networks Reveal Sex Difference in Lung Adenocarcinoma. bioRxiv : the preprint server for biology (2023)
Katherine H Shutta, Deborah A Weighill, Rebekka Burkholz, Marouen Ben Guebila, Dawn L DeMeo, Helena U Zacharias, John Quackenbush, Michael Altenbuchinger
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks. Nucleic acids research (2022)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth A Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D Boerckel, Christian Brueffer, James Brian Byrd, Jeremy P Kamil, Jinhui Wang, Ryan Velazquez, Gregory Lee Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana Alves, null null, Anthony Gitter, Casey S Greene
Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure". mSystems 7 (1) (2022)
Deborah A Weighill, Marouen Ben Guebila, Kimberly Glass, John Quackenbush, John Platig
Predicting genotype-specific gene regulatory networks. Genome research 32 (3) (2022)
Katherine H Shutta, Deborah A Weighill, Rebekka Burkholz, Marouen Ben Guebila, Dawn L DeMeo, Helena U Zacharias, John Quackenbush, Michael Altenbuchinger
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks. Nucleic acids research (2022)
Marouen Ben Guebila, Deborah Weighill, Camila M Lopes-Ramos, Rebekka Burkholz, Romana T Pop, Kalyan Palepu, Mia Shapoval, Maud Fagny, Daniel Schlauch, Kimberly Glass, Michael Altenbuchinger, Marieke Lydia Kuijjer, John Platig, John Quackenbush
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks. Nature methods 19 (5) (2022)
Marouen Ben Guebila, Daniel C Morgan, Kimberly Glass, Marieke Lydia Kuijjer, Dawn L DeMeo, John Quackenbush
gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit. NAR genomics and bioinformatics 4 (1) (2022)
Halie M Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J Lee, Anna Ada Dattoli, Fengling Hu, James Brian Byrd, Diane N Rafizadeh, Ronan Lordan, Yanjun Qi, Yuchen Sun, Christian Brueffer, Jeffrey M Field, Marouen Ben Guebila, Nafisa M Jadavji, Ashwin N Skelly, Bharath Ramsundar, Jinhui Wang, Rishi Raj Goel, YoSon Park, null null, Simina M Boca, Anthony Gitter, Casey S Greene
Identification and Development of Therapeutics for COVID-19. mSystems (2021)
Halie M Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J Lee, Anna Ada Dattoli, Fengling Hu, James Brian Byrd, Diane N Rafizadeh, Yanjun Qi, Yuchen Sun, Jeffrey M Field, Marouen Ben Guebila, Nafisa M Jadavji, Ronan Lordan, Ashwin N Skelly, Bharath Ramsundar, Christian Brueffer, Jinhui Wang, Rishi Raj Goel, YoSon Park, null null, Simina M Boca, Anthony Gitter, Casey S Greene
Identification and Development of Therapeutics for COVID-19. ArXiv (2021)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth A Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, Yuchen Sun, David Mai, Christian Brueffer, James Brian Byrd, Jinhui Wang, Ronan Lordan, Ryan Velazquez, Gregory Lee Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana Alves, null null, Anthony Gitter, Casey S Greene
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. ArXiv (2021)
Marouen Ben Guebila, Camila M Lopes-Ramos, Deborah A Weighill, Abhijeet Rajendra Sonawane, Rebekka Burkholz, Behrouz Shamsaei, John Platig, Kimberly Glass, Marieke Lydia Kuijjer, John Quackenbush
GRAND: a database of gene regulatory network models across human conditions. Nucleic acids research (2021)
Camila M Lopes-Ramos, Tatiana Belova, Tess H Brunner, Marouen Ben Guebila, Daniel Osorio, John Quackenbush, Marieke Lydia Kuijjer
Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme. Cancer research 81 (21) (2021)
Marouen Ben Guebila
VFFVA: dynamic load balancing enables large-scale flux variability analysis. BMC bioinformatics 21 (1) (2020)