Casey S Greene (Adam J Book, Casey Greene)

ResearcherID Scopus Author ID Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 118

Top Venues

mSystems

bioRxiv : the preprint server for biology

GigaScience

Microbiology spectrum

University of Pennsylvania Perelman School of Medicine

Dartmouth College Geisel School of Medicine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pennsylvania Perelman School of Medicine

United States

Associate Professor :: Systems Pharmacology and Translational Therapeutics

University of Pennsylvania Perelman School of Medicine

United States

Assistant Professor :: Systems Pharmacology and Translational Therapeutics

Dartmouth College Geisel School of Medicine Aug 01 2012 - Jul 31 2015

United States

Assistant Professor :: Genetics

Princeton University Aug 01 2009 - Jul 31 2012

United States

Postdoctoral Fellow :: Lewis-Sigler Institute for Integrative Genomics

Education History

Dartmouth College Geisel School of Medicine Sep 01 2005 - Aug 01 2009

United States

PHD :: Genetics

Publications

Milton Pividori, Casey S Greene
A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Milton Pividori, Casey S Greene
A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum 12 (4) (2024)
Natalie R Davidson, Casey S Greene
Analysis of science journalism reveals gender and regional disparities in coverage. eLife 12 (2024)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. GigaScience 13 (2024)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. GigaScience 13 (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum 12 (4) (2024)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy E Campbell, Courtney E Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer Anne Doherty
Molecular Subtypes of High-Grade Serous Ovarian Cancer across Racial Groups and Gene Expression Platforms. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 33 (8) (2024)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy E Campbell, Courtney E Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer Anne Doherty
Molecular subtypes of high-grade serous ovarian cancer across racial groups and gene expression platforms. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology (2024)
Natalie R Davidson, Casey S Greene
Analysis of science journalism reveals gender and regional disparities in coverage. eLife 12 (2024)
Milton Pividori, Casey S Greene
A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring. Journal of the American Medical Informatics Association : JAMIA (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum 12 (4) (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum 12 (4) (2024)
Jake Crawford, Maria Chikina, Casey S Greene
Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction. Bioinformatics advances 4 (1) (2024)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. GigaScience 13 (2024)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy E Campbell, Courtney E Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer Anne Doherty
Molecular subtypes of high-grade serous ovarian cancer across racial groups and gene expression platforms. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology (2024)
Milton Pividori, Casey S Greene
A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. GigaScience 13 (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum 12 (4) (2024)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum. Microbiology spectrum 12 (4) (2024)
Jake Crawford, Maria Chikina, Casey S Greene
Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction. Bioinformatics advances 4 (1) (2024)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy E Campbell, Courtney E Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer Anne Doherty
Molecular Subtypes of High-Grade Serous Ovarian Cancer across Racial Groups and Gene Expression Platforms. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 33 (8) (2024)
Jake Crawford, Maria Chikina, Casey S Greene
Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction. Bioinformatics advances 4 (1) (2024)
Milton Pividori, Casey S Greene
A publishing infrastructure for Artificial Intelligence (AI)-assisted academic authoring. Journal of the American Medical Informatics Association : JAMIA (2024)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. GigaScience 13 (2024)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy E Campbell, Courtney E Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer Anne Doherty
Molecular subtypes of high-grade serous ovarian cancer across racial groups and gene expression platforms. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology (2024)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy E Campbell, Courtney E Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer Anne Doherty
Molecular Subtypes of High-Grade Serous Ovarian Cancer across Racial Groups and Gene Expression Platforms. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 33 (8) (2024)
Natalie R Davidson, Casey S Greene
Analysis of science journalism reveals gender and regional disparities in coverage. eLife 12 (2024)
Benjamin J Heil, Casey S Greene
The Field-Dependent Nature of PageRank Values in Citation Networks. bioRxiv : the preprint server for biology (2023)
Steven M Foltz, Casey S Greene, Jaclyn N Taroni
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. Communications biology 6 (1) (2023)
Shuo Zhang, Benjamin J Heil, Wayne Mao, Casey S Greene, Elizabeth A Heller
MousiPLIER: A Mouse Pathway-Level Information Extractor Model. bioRxiv : the preprint server for biology (2023)
Halie M Rando, Ronan Lordan, Alexandra J Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, Likhitha Kolla, null null, Anthony Gitter, Casey S Greene
Application of Traditional Vaccine Development Strategies to SARS-CoV-2. mSystems (2023)
Benjamin J Heil, Casey S Greene
The Field-Dependent Nature of PageRank Values in Citation Networks. bioRxiv : the preprint server for biology (2023)
Samuel L Neff, Georgia Doing, Taylor E Reiter, Thomas H Hampton, Casey S Greene, Deborah Ann Hogan
Analysis of Pseudomonas aeruginosa transcription in an ex vivo cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus. bioRxiv : the preprint server for biology (2023)
Milton Pividori, Casey S Greene
A publishing infrastructure for AI-assisted academic authoring. bioRxiv : the preprint server for biology (2023)
Steven M Foltz, Casey S Greene, Jaclyn N Taroni
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. Communications biology 6 (1) (2023)
Ariel A Hippen, Dalia K Omran, Lukas M Weber, Euihye Jung, Ronny Drapkin, Jennifer A Doherty, Stephanie C Hicks, Casey S Greene
Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors. Genome biology 24 (1) (2023)
Daniel Scott Himmelstein, Michael Zietz, Vincent P Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal S Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
Hetnet connectivity search provides rapid insights into how two biomedical entities are related. bioRxiv : the preprint server for biology (2023)
Halie M Rando, Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J Lee, Nils Wellhausen, Amruta Naik, Jeremy P Kamil, null null, Anthony Gitter, Casey S Greene
The Coming of Age of Nucleic Acid Vaccines during COVID-19. mSystems (2023)
Richard J Abdill, Samantha P Graham, Vincent P Rubinetti, Frank Wolfgang Albert, Casey S Greene, Sean Davis, Ran Blekhman
Integration of 168,000 samples reveals global patterns of the human gut microbiome. bioRxiv : the preprint server for biology (2023)
Milton Pividori, Casey S Greene
A publishing infrastructure for AI-assisted academic authoring. bioRxiv : the preprint server for biology (2023)
Halie M Rando, Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J Lee, Nils Wellhausen, Amruta Naik, Jeremy P Kamil, null null, Anthony Gitter, Casey S Greene
The Coming of Age of Nucleic Acid Vaccines during COVID-19. mSystems (2023)
David N Nicholson, Faisal S Alquaddoomi, Vincent Rubinetti, Casey S Greene
Changing word meanings in biomedical literature reveal pandemics and new technologies. BioData mining 16 (1) (2023)
Natalie R Davidson, Mollie E Barnard, Ariel A Hippen, Amy Campbell, Courtney Johnson, Gregory P Way, Brian K Dalley, Andrew Berchuck, Lucas A Salas, Lauren C Peres, Jeffrey R Marks, Joellen M Schildkraut, Casey S Greene, Jennifer A Doherty
Molecular subtypes of high grade serous ovarian cancer across racial groups and gene expression platforms. bioRxiv : the preprint server for biology (2023)
Halie M Rando, Ronan Lordan, Alexandra J Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, Likhitha Kolla, null null, Anthony Gitter, Casey S Greene
Application of Traditional Vaccine Development Strategies to SARS-CoV-2. mSystems (2023)
David N Nicholson, Faisal S Alquaddoomi, Vincent Rubinetti, Casey S Greene
Changing word meanings in biomedical literature reveal pandemics and new technologies. BioData mining 16 (1) (2023)
Jineta Banerjee, Jaclyn N Taroni, Robert J Allaway, Deepashree Venkatesh Prasad, Justin Guinney, Casey S Greene
Machine learning in rare disease. Nature methods (2023)
Daniel Scott Himmelstein, Michael Zietz, Vincent P Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal S Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
Hetnet connectivity search provides rapid insights into how biomedical entities are related. GigaScience 12 (2023)
Benjamin J Heil, Casey S Greene
The Field-Dependent Nature of PageRank Values in Citation Networks. bioRxiv : the preprint server for biology (2023)
Daniel Scott Himmelstein, Michael Zietz, Vincent P Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal S Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
Hetnet connectivity search provides rapid insights into how two biomedical entities are related. bioRxiv : the preprint server for biology (2023)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. bioRxiv : the preprint server for biology (2023)
Daniel Scott Himmelstein, Michael Zietz, Vincent P Rubinetti, Kyle Kloster, Benjamin J Heil, Faisal S Alquaddoomi, Dongbo Hu, David N Nicholson, Yun Hao, Blair D Sullivan, Michael W Nagle, Casey S Greene
Hetnet connectivity search provides rapid insights into how two biomedical entities are related. bioRxiv : the preprint server for biology (2023)
Ricardo Avila, Vincent P Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey S Greene, Chunlei Wu
MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes. Nucleic acids research (2023)
Halie M Rando, Ronan Lordan, Alexandra J Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, Likhitha Kolla, null null, Anthony Gitter, Casey S Greene
Application of Traditional Vaccine Development Strategies to SARS-CoV-2. mSystems (2023)
Steven M Foltz, Casey S Greene, Jaclyn N Taroni
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. Communications biology 6 (1) (2023)
Natalie R Davidson, Casey S Greene
BuDDI: Bulk Deconvolution with Domain Invariance to predict cell-type-specific perturbations from bulk. bioRxiv : the preprint server for biology (2023)
David N Nicholson, Faisal S Alquaddoomi, Vincent Rubinetti, Casey S Greene
Changing word meanings in biomedical literature reveal pandemics and new technologies. BioData mining 16 (1) (2023)
Benjamin J Heil, Jake Crawford, Casey S Greene
The effect of non-linear signal in classification problems using gene expression. PLoS computational biology 19 (3) (2023)
Michael Zietz, Daniel Scott Himmelstein, Kyle Kloster, Christopher Williams, Michael W Nagle, Casey S Greene
The probability of edge existence due to node degree: a baseline for network-based predictions. bioRxiv : the preprint server for biology (2023)
Halie M Rando, Ronan Lordan, Alexandra J Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, Likhitha Kolla, null null, Anthony Gitter, Casey S Greene
Application of Traditional Vaccine Development Strategies to SARS-CoV-2. mSystems (2023)
Steven M Foltz, Casey S Greene, Jaclyn N Taroni
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. Communications biology 6 (1) (2023)
Steven M Foltz, Casey S Greene, Jaclyn N Taroni
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. Communications biology 6 (1) (2023)
Milton Pividori, Sumei Lu, Binglan Li, Chun Su, Matthew E Johnson, Wei-Qi Wei, QiPing Feng, Bahram Namjou, Krzysztof Kiryluk, Iftikhar J Kullo, Yuan Luo, Blair D Sullivan, Benjamin F Voight, Carsten Skarke, Marylyn DeRiggi Ritchie, Struan F A Grant, null null, Casey S Greene
Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms. Nature communications 14 (1) (2023)
Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor E Reiter, Deborah Ann Hogan, Casey S Greene
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14. mSystems 8 (1) (2022)
Ariel A Hippen, Jake Crawford, Jacob R Gardner, Casey S Greene
wenda_gpu: fast domain adaptation for genomic data. Bioinformatics (Oxford, England) 38 (22) (2022)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth A Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D Boerckel, Christian Brueffer, James Brian Byrd, Jeremy P Kamil, Jinhui Wang, Ryan Velazquez, Gregory Lee Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana Alves, null null, Anthony Gitter, Casey S Greene
Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure". mSystems 7 (1) (2022)
David N Nicholson, Daniel Scott Himmelstein, Casey S Greene
Expanding a database-derived biomedical knowledge graph via multi-relation extraction from biomedical abstracts. BioData mining 15 (1) (2022)
Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor E Reiter, Deborah Ann Hogan, Casey S Greene
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14. mSystems 8 (1) (2022)
Lukas M Weber, Ariel A Hippen, Peter F Hickey, Kristofer C Berrett, Jason Gertz, Jennifer Anne Doherty, Casey S Greene, Stephanie C Hicks
Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design. GigaScience 10 (9) (2022)
Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor E Reiter, Deborah Ann Hogan, Casey S Greene
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14. mSystems (2022)
Georgia Doing, Alexandra J Lee, Samuel L Neff, Taylor Reiter, Jacob D Holt, Bruce A Stanton, Casey S Greene, Deborah Ann Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia. mSystems (2022)
Ariel A Hippen, Natalie R Davidson, Casey S Greene
Computational audits combat disparities in recognition. Nature human behaviour 6 (4) (2022)
Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor E Reiter, Deborah Ann Hogan, Casey S Greene
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14. mSystems 8 (1) (2022)
Georgia Doing, Alexandra J Lee, Samuel L Neff, Taylor Reiter, Jacob D Holt, Bruce A Stanton, Casey S Greene, Deborah Ann Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia. mSystems 8 (1) (2022)
Georgia Doing, Alexandra J Lee, Samuel L Neff, Taylor Reiter, Jacob D Holt, Bruce A Stanton, Casey S Greene, Deborah Ann Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia. mSystems 8 (1) (2022)
Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor E Reiter, Deborah Ann Hogan, Casey S Greene
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14. mSystems 8 (1) (2022)
Jake Crawford, Brock C Christensen, Maria Chikina, Casey S Greene
Widespread redundancy in -omics profiles of cancer mutation states. Genome biology 23 (1) (2022)
David N Nicholson, Vincent Rubinetti, Dongbo Hu, Marvin Thielk, Lawrence E Hunter, Casey S Greene
Examining linguistic shifts between preprints and publications. PLoS biology 20 (2) (2022)
Arkarachai Fungtammasan, Alexandra J Lee, Jaclyn N Taroni, Kurt Wheeler, Chen-Shan Chin, Sean Davis, Casey S Greene
Ten simple rules for large-scale data processing. PLoS computational biology 18 (2) (2022)
Georgia Doing, Alexandra J Lee, Samuel L Neff, Taylor Reiter, Jacob D Holt, Bruce A Stanton, Casey S Greene, Deborah Ann Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia. mSystems 8 (1) (2022)
Benjamin D Lee, Anthony Gitter, Casey S Greene, Sebastian Raschka, Finlay Maguire, Alexander J Titus, Michael D Kessler, Alexandra J Lee, Marc G Chevrette, Paul Allen Stewart, Thiago Britto-Borges, Evan M Cofer, Kun-Hsing Yu, Juan Jose Carmona, Elana J Fertig, Alexandr A Kalinin, Brandon Signal, Benjamin J Lengerich, Timothy J Triche, Simina M Boca
Ten quick tips for deep learning in biology. PLoS computational biology 18 (3) (2022)
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N Taroni, Vincent J Carey, Casey S Greene, Levi Waldron, Sean Davis
GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases. Nature communications 13 (1) (2022)
Alexandra J Lee, Georgia Doing, Samuel L Neff, Taylor E Reiter, Deborah Ann Hogan, Casey S Greene
Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14. mSystems 8 (1) (2022)
Georgia Doing, Alexandra J Lee, Samuel L Neff, Taylor Reiter, Jacob D Holt, Bruce A Stanton, Casey S Greene, Deborah Ann Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia. mSystems 8 (1) (2022)
Georgia Doing, Alexandra J Lee, Samuel L Neff, Taylor Reiter, Jacob D Holt, Bruce A Stanton, Casey S Greene, Deborah Ann Hogan
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia. mSystems 8 (1) (2022)
Gregory P Way, Casey S Greene, Piero Carnici, Benilton S Carvalho, Michiel J L de Hoon, Stacey D Finley, Sara J C Gosline, Kim-Anh Lê Cao, Jerry S H Lee, Luigi Marchionni, Nicolas Robine, Suzanne S Sindi, Fabian Joachim Theis, Jean Yee Hwa Yang, Anne E Carpenter, Elana J Fertig
A field guide to cultivating computational biology. PLoS biology 19 (10) (2021)
Ronan Lordan, Halie M Rando, null null, Casey S Greene
Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment. mSystems 6 (3) (2021)
Halie M Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J Lee, Anna Ada Dattoli, Fengling Hu, James Brian Byrd, Diane N Rafizadeh, Ronan Lordan, Yanjun Qi, Yuchen Sun, Christian Brueffer, Jeffrey M Field, Marouen Ben Guebila, Nafisa M Jadavji, Ashwin N Skelly, Bharath Ramsundar, Jinhui Wang, Rishi Raj Goel, YoSon Park, null null, Simina M Boca, Anthony Gitter, Casey S Greene
Identification and Development of Therapeutics for COVID-19. mSystems (2021)
Halie M Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J Lee, Anna Ada Dattoli, Fengling Hu, James Brian Byrd, Diane N Rafizadeh, Yanjun Qi, Yuchen Sun, Jeffrey M Field, Marouen Ben Guebila, Nafisa M Jadavji, Ronan Lordan, Ashwin N Skelly, Bharath Ramsundar, Christian Brueffer, Jinhui Wang, Rishi Raj Goel, YoSon Park, null null, Simina M Boca, Anthony Gitter, Casey S Greene
Identification and Development of Therapeutics for COVID-19. ArXiv (2021)
Anthony R Kerlavage, Anne C Kirchhoff, Jaime M Guidry Auvil, Norman E Sharpless, Kara L Davis, Karlyne M Reilly, Gregory Reaman, Lynne Penberthy, Dennis Deapen, Amie E Hwang, Eric B Durbin, Sara L Gallotto, Richard Aplenc, Samuel L Volchenboum, Allison P Heath, Bruce J Aronow, Jinghui Zhang, Olena Morozova Vaske, Todd A Alonzo, Paul C Nathan, Jenny N Poynter, Greg Armstrong, Erin E Hahn, Karen J Wernli, Casey S Greene, Jack DiGiovanna, Adam C Resnick, Eve R Shalley, Sorena Nadaf, Warren A Kibbe
Cancer Informatics for Cancer Centers: Scientific Drivers for Informatics, Data Science, and Care in Pediatric, Adolescent, and Young Adult Cancer. JCO clinical cancer informatics 5 (2021)
Ariel A Hippen, Matias M Falco, Lukas M Weber, Erdogan Pekcan Erkan, Kaiyang Zhang, Jennifer Anne Doherty, Anna Vaharautio, Casey S Greene, Stephanie C Hicks
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. PLoS computational biology 17 (8) (2021)
Adam C Mueller, Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S Williams, Shilpa Bhatia, Andy V Phan, Benjamin Van Court, Kathryn L Zolman, Daewon Park, Ayman J Oweida, Sara Zakem, Cheryl Meguid, Michael William Knitz, Laurel Darragh, Thomas E Bickett, Jacob Gadwa, Luisa Mestroni, Matthew R G Taylor, Kimberley R Jordan, Peter Dempsey, M Scott Lucia, Martin D McCarter, Marco Del Chiaro, Wells A Messersmith, Richard D Schulick, Karyn A Goodman, Michael J Gough, Casey S Greene, James C Costello, Antonio Galveo Neto, David Lagares, Kirk C Hansen, Adrie Van Bokhoven, Sana D Karam
Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer. Cancer research 81 (12) (2021)
Ronan Lordan, Halie M Rando, null null, Casey S Greene
Dietary Supplements and Nutraceuticals Under Investigation for COVID-19 Prevention and Treatment. ArXiv (2021)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth A Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, Yuchen Sun, David Mai, Christian Brueffer, James Brian Byrd, Jinhui Wang, Ronan Lordan, Ryan Velazquez, Gregory Lee Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana Alves, null null, Anthony Gitter, Casey S Greene
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. ArXiv (2021)
Halie M Rando, Adam L MacLean, Alexandra J Lee, Ronan Lordan, Sandipan Ray, Vikas Bansal, Ashwin N Skelly, Elizabeth Sell, John J Dziak, Lamonica Shinholster, Lucy D'Agostino McGowan, Marouen Ben Guebila, Nils Wellhausen, Sergey Knyazev, Simina M Boca, Stephen Capone, Yanjun Qi, YoSon Park, David Mai, Yuchen Sun, Joel D Boerckel, Christian Brueffer, James Brian Byrd, Jeremy P Kamil, Jinhui Wang, Ryan Velazquez, Gregory L Szeto, John P Barton, Rishi Raj Goel, Serghei Mangul, Tiago Lubiana, null null, Anthony Gitter, Casey S Greene
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure. mSystems 6 (5) (2021)
Jineta Banerjee, Robert J Allaway, Jaclyn N Taroni, Aaron Baker, Xiaochun Zhang, Chang In Moon, Christine A Pratilas, Jaishri O Blakeley, Justin Guinney, Angela C Hirbe, Casey S Greene, Sara J C Gosline
Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1. Genes 11 (2) (2020)
Michelle E Clay, John H Hammond, Fangfang Zhong, Xiaolei Chen, Caitlin H Kowalski, Alexandra J Lee, Monique S Porter, Thomas H Hampton, Casey S Greene, Ekaterina V Pletneva, Deborah Ann Hogan
Pseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin. Proceedings of the National Academy of Sciences of the United States of America 117 (6) (2020)
William E Allen, Han Altae-Tran, James Alexander Briggs, Xin Jin, Glen McGee, Andy Shi, Rumya Raghavan, Mireille Kamariza, Nicole Nova, Albert Pereta, Chris Danford, Amine Kamel, Patrik Gothe, Evrhet Milam, Jean Aurambault, Thorben Primke, Weijie Li, Josh Inkenbrandt, Tuan Huynh, Evan Chen, Christina Lee, Michael Croatto, Helen Bentley, Wendy Lu, Robert Murray, Mark A Travassos, Brent A Coull, John J Openshaw, Casey S Greene, Ophir Shalem, Gary King, Ryan Probasco, David R Cheng, Ben Silbermann, Feng Zhang, Xihong Lin
Population-scale longitudinal mapping of COVID-19 symptoms, behaviour and testing. Nature human behaviour 4 (9) (2020)
Benjamin Haibe-Kains, George Alexandru Adam, Ahmed Hosny, Farnoosh Khodakarami, null null, Levi Waldron, Bo Wang, Chris McIntosh, Anna Goldenberg, Anshul Kundaje, Casey S Greene, Tamara Broderick, Michael M Hoffman, Jeffrey T Leek, Keegan Korthauer, Wolfgang Huber, Alvis Brazma, Joelle Pineau, Robert Tibshirani, Trevor Hastie, John P A Ioannidis, John Quackenbush, Hugo J W L Aerts
Transparency and reproducibility in artificial intelligence. Nature 586 (7829) (2020)

Casey S Greene.css-eqlu8i{font-size:small;padding-left:4px;} (Adam J Book, Casey Greene)

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Casey S Greene (Adam J Book, Casey Greene)