ArXiv

Keyphrases

Publications

2024

Ting-He Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang
Understanding YTHDF2-mediated mRNA Degradation By m6A-BERT-Deg. ArXiv (2024)
Avaneesh V Narla, Terence Hwa, Arvind Murugan
Dynamic coexistence driven by physiological transitions in microbial communities. ArXiv (2024)
Benjamin Peters, James J DiCarlo, Todd Gureckis, Ralf Haefner, Leyla Isik, Joshua Tenenbaum, Talia Konkle, Thomas Naselaris, Kimberly Stachenfeld, Zenna Tavares, Doris Tsao, Ilker Yildirim, Nikolaus Kriegeskorte
How does the primate brain combine generative and discriminative computations in vision? ArXiv (2024)
Michelle A Bartolo, Alyssa M Taylor-LaPole, Darsh Gandhi, Alexandria Johnson, Yaqi Li, Emma Slack, Isaiah Stevens, Zachary Turner, Justin D Weigand, Charles Puelz, Dirk Husmeier, Mette S Olufsen
Computational framework for the generation of one-dimensional vascular models accounting for uncertainty in networks extracted from medical images. ArXiv (2024)
Jason Yim, Andrew Campbell, Emile Mathieu, Andrew Y K Foong, Michael Gastegger, José Jiménez-Luna, Sarah Lewis, Victor Garcia Satorras, Bastiaan S Veeling, Frank Noé, Regina Barzilay, Tommi S Jaakkola
Improved motif-scaffolding with SE(3) flow matching. ArXiv (2024)
Ting-He Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang
Understanding YTHDF2-mediated mRNA Degradation By m 6 A-BERT-Deg. ArXiv (2024)
Avaneesh V Narla, Terence Hwa, Arvind Murugan
Dynamic coexistence driven by physiological transitions in microbial communities. ArXiv (2024)
Elizabeth S Allman, Hector Baños, Marina Garrote-Lopez, John A Rhodes
IDENTIFIABILITY OF LEVEL-1 SPECIES NETWORKS FROM GENE TREE QUARTETS. ArXiv (2024)
Teresa W Lo, Han Kyou James Choi, Dean Huang, Paul A Wiggins
Noise robustness and metabolic load determine the principles of central dogma regulation. ArXiv (2024)
Avaneesh V Narla, Terence Hwa, Arvind Murugan
Dynamic coexistence driven by physiological transitions in microbial communities. ArXiv (2024)
Michael J Crosse, John J Foxe, Sophie Molholm
PERMUTOOLS: A MATLAB Package for Multivariate Permutation Testing. ArXiv (2024)
Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin Menten, Ivan Ezhov, Daniel Rueckert, Iris Vos, Ynte Ruigrok, Birgitta Velthuis, Hugo Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Bene Wiestler, Jan S Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Letourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, Pengcheng Shi, Wei Liu, Ting Ma, Cansu Yalçin, Rachika E Hamadache, Joaquim Salvi, Xavier Llado, Uma Maria Lal-Trehan Estrada, Valeriia Abramova, Luca Giancardo, Arnau Oliver, Jialu Liu, Haibin Huang, Yue Cui, Zehang Lin, Yusheng Liu, Shunzhi Zhu, Tatsat R Patel, Vincent M Tutino, Maysam Orouskhani, Huayu Wang, Mahmud Mossa-Basha, Chengcheng Zhu, Maximilian R Rokuss, Yannick Kirchhoff, Nico Disch, Julius Holzschuh, Fabian Isensee, Klaus Maier-Hein, Yuki Sato, Sven Hirsch, Susanne Wegener, Bjoern Menze
TopCoW: Benchmarking Topology-Aware Anatomical Segmentation of the Circle of Willis (CoW) for CTA and MRA. ArXiv (2024)
Hamid Ghaderi, Brandon Foreman, Chandan K Reddy, Vignesh Subbian
Discovery of Generalizable TBI Phenotypes Using Multivariate Time-Series Clustering. ArXiv (2024)
Alexandre Bousse, Venkata Sai Sundar Kandarpa, Kuangyu Shi, Kuang Gong, Jae Sung Lee, Chi Liu, Dimitris Visvikis
A Review on Low-Dose Emission Tomography Post-Reconstruction Denoising with Neural Network Approaches. ArXiv (2024)
Junhao Wen, Mathilde Antoniades, Zhijian Yang, Gyujoon Hwang, Ioanna Skampardoni, Rongguang Wang, Christos Davatzikos
Dimensional Neuroimaging Endophenotypes: Neurobiological Representations of Disease Heterogeneity Through Machine Learning. ArXiv (2024)
Jason Yim, Andrew Campbell, Emile Mathieu, Andrew Y K Foong, Michael Gastegger, José Jiménez-Luna, Sarah Lewis, Victor Garcia Satorras, Bastiaan S Veeling, Frank Noé, Regina Barzilay, Tommi S Jaakkola
Improved motif-scaffolding with SE(3) flow matching. ArXiv (2024)
Teresa W Lo, Han Kyou James Choi, Dean Huang, Paul A Wiggins
Noise robustness and metabolic load determine the principles of central dogma regulation. ArXiv (2024)
Jason Yim, Andrew Campbell, Emile Mathieu, Andrew Y K Foong, Michael Gastegger, José Jiménez-Luna, Sarah Lewis, Victor Garcia Satorras, Bastiaan S Veeling, Frank Noé, Regina Barzilay, Tommi S Jaakkola
Improved motif-scaffolding with SE(3) flow matching. ArXiv (2024)
Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin Menten, Ivan Ezhov, Daniel Rueckert, Iris Vos, Ynte Ruigrok, Birgitta Velthuis, Hugo Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Bene Wiestler, Jan S Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Letourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, Pengcheng Shi, Wei Liu, Ting Ma, Cansu Yalçin, Rachika E Hamadache, Joaquim Salvi, Xavier Llado, Uma Maria Lal-Trehan Estrada, Valeriia Abramova, Luca Giancardo, Arnau Oliver, Jialu Liu, Haibin Huang, Yue Cui, Zehang Lin, Yusheng Liu, Shunzhi Zhu, Tatsat R Patel, Vincent M Tutino, Maysam Orouskhani, Huayu Wang, Mahmud Mossa-Basha, Chengcheng Zhu, Maximilian R Rokuss, Yannick Kirchhoff, Nico Disch, Julius Holzschuh, Fabian Isensee, Klaus Maier-Hein, Yuki Sato, Sven Hirsch, Susanne Wegener, Bjoern Menze
TopCoW: Benchmarking Topology-Aware Anatomical Segmentation of the Circle of Willis (CoW) for CTA and MRA. ArXiv (2024)
Benjamin Peters, James J DiCarlo, Todd Gureckis, Ralf Haefner, Leyla Isik, Joshua Tenenbaum, Talia Konkle, Thomas Naselaris, Kimberly Stachenfeld, Zenna Tavares, Doris Tsao, Ilker Yildirim, Nikolaus Kriegeskorte
How does the primate brain combine generative and discriminative computations in vision? ArXiv (2024)
Elizabeth S Allman, Hector Baños, Marina Garrote-Lopez, John A Rhodes
Identifiability of Level-1 Species Networks from Gene Tree Quartets. ArXiv (2024)
Nick Scholand, Christina Graf, Daniel Mackner, H Christian M Holme, Martin Uecker
Rational Approximation of Golden Angles for Simple and Reproducible Radial Sampling. ArXiv (2024)
Teresa W Lo, Han Kyou James Choi, Dean Huang, Paul A Wiggins
Noise robustness and metabolic load determine the principles of central dogma regulation. ArXiv (2024)
M N H Rashad, Abishek Karki, Jason Czak, Victor Gabriel Alves, Hamidreza Nourzadeh, Wookjin Choi, Jeffrey V Siebers
Quantitative assessment of dosimetric effect of using alternative OAR delineations in treatment planning as functions of delineations, setup uncertainty and planning techniques using an alternative truth assessment method. ArXiv (2024)
Jiajia Liu, Mengyuan Yang, Yankai Yu, Haixia Xu, Kang Li, Xiaobo Zhou
Large language models in bioinformatics: applications and perspectives. ArXiv (2024)
Mehdi Ramezanpour, Anne M Robertson, Yasutaka Tobe, Xiaowei Jia, Juan R Cebral
Phenotyping calcification in vascular tissues using artificial intelligence. ArXiv (2024)
Tejasvi Channagiri, Margherita Maria Ferrari, Youngkyu Jeon, Penghao Xu, Francesca Storici, Nataša Jonoska
DSBplot: Indels in DNA Double-strand Break Repair Experiments. ArXiv (2024)
Xiaohui Zhang, Eric C Landsness, Hanyang Miao, Wei Chen, Michelle Tang, Lindsey M Brier, Joseph P Culver, Jin-Moo Lee, Mark A Anastasio
Attention-Based CNN-BiLSTM for Sleep State Classification of Spatiotemporal Wide-Field Calcium Imaging Data. ArXiv (2024)
LaNell A Williams, Andreas Neophytou, Rees F Garmann, Dwaipayan Chakrabarti, Vinothan N Manoharan
Effect of coat-protein concentration on the self-assembly of bacteriophage MS2 capsids around RNA. ArXiv (2024)
Xin Cao, Michelle H Hummel, Yuzhang Wang, Carlos Simmerling, Evangelos A Coutsias
Exact analytical algorithm for solvent accessible surface area and derivatives in implicit solvent molecular simulations on GPUs. ArXiv (2024)
Gang Qu, Anton Orlichenko, Junqi Wang, Gemeng Zhang, Li Xiao, Aiying Zhang, Zhengming Ding, Yu-Ping Wang
Exploring General Intelligence via Gated Graph Transformer in Functional Connectivity Studies. ArXiv (2024)
Noga Kertes, Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K Warfield, Moti Freiman
IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. ArXiv (2024)
Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin Menten, Ivan Ezhov, Daniel Rueckert, Iris Vos, Ynte Ruigrok, Birgitta Velthuis, Hugo Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Bene Wiestler, Jan S Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Letourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, Pengcheng Shi, Wei Liu, Ting Ma, Cansu Yalçin, Rachika E Hamadache, Joaquim Salvi, Xavier Llado, Uma Maria Lal-Trehan Estrada, Valeriia Abramova, Luca Giancardo, Arnau Oliver, Jialu Liu, Haibin Huang, Yue Cui, Zehang Lin, Yusheng Liu, Shunzhi Zhu, Tatsat R Patel, Vincent M Tutino, Maysam Orouskhani, Huayu Wang, Mahmud Mossa-Basha, Chengcheng Zhu, Maximilian R Rokuss, Yannick Kirchhoff, Nico Disch, Julius Holzschuh, Fabian Isensee, Klaus Maier-Hein, Yuki Sato, Sven Hirsch, Susanne Wegener, Bjoern Menze
TopCoW: Benchmarking Topology-Aware Anatomical Segmentation of the Circle of Willis (CoW) for CTA and MRA. ArXiv (2024)
Michael J Crosse, John J Foxe, Sophie Molholm
PERMUTOOLS: A MATLAB PACKAGE FOR MULTIVARIATE PERMUTATION TESTING. ArXiv (2024)
Jiajia Liu, Mengyuan Yang, Yankai Yu, Haixia Xu, Kang Li, Xiaobo Zhou
Large language models in bioinformatics: applications and perspectives. ArXiv (2024)
Benjamin Peters, James J DiCarlo, Todd Gureckis, Ralf Haefner, Leyla Isik, Joshua Tenenbaum, Talia Konkle, Thomas Naselaris, Kimberly Stachenfeld, Zenna Tavares, Doris Tsao, Ilker Yildirim, Nikolaus Kriegeskorte
How does the primate brain combine generative and discriminative computations in vision? ArXiv (2024)
Samantha Linn, Sean D Lawley, Bhargav R Karamched, Zachary P Kilpatrick, Krešimir Josić
Fast decisions reflect biases, slow decisions do not. ArXiv (2024)
Ting-He Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang
Understanding YTHDF2-mediated mRNA Degradation By m6A-BERT-Deg. ArXiv (2024)
Mariyam Khan, Adriaan Ludl, Sean Bankier, Johan Lm Björkegren, Tom Michoel
Prediction of causal genes at GWAS loci with pleiotropic gene regulatory effects using sets of correlated instrumental variables. ArXiv (2024)
Ting-He Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang
Understanding YTHDF2-mediated mRNA Degradation By m6A-BERT-Deg. ArXiv (2024)
Jiajia Liu, Mengyuan Yang, Yankai Yu, Haixia Xu, Kang Li, Xiaobo Zhou
Large language models in bioinformatics: applications and perspectives. ArXiv (2024)
Xin Cao, Michelle H Hummel, Yuzhang Wang, Carlos Simmerling, Evangelos A Coutsias
Exact analytical algorithm for solvent accessible surface area and derivatives in implicit solvent molecular simulations on GPUs. ArXiv (2024)
Ricardo Coronado-Leija, Ali Abdollahzadeh, Hong-Hsi Lee, Santiago Coelho, Benjamin Ades-Aron, Ying Liao, Raimo A Salo, Jussi Tohka, Alejandra Sierra, Dmitry S Novikov, Els Fieremans
Volume electron microscopy in injured rat brain validates white matter microstructure metrics from diffusion MRI. ArXiv (2024)
Samantha Linn, Sean D Lawley, Bhargav R Karamched, Zachary P Kilpatrick, Krešimir Josić
Fast decisions reflect biases, slow decisions do not. ArXiv (2024)
Mehdi Ramezanpour, Anne M Robertson, Yasutaka Tobe, Xiaowei Jia, Juan R Cebral
Phenotyping calcification in vascular tissues using artificial intelligence. ArXiv (2024)
Alexandre Bousse, Venkata Sai Sundar Kandarpa, Kuangyu Shi, Kuang Gong, Jae Sung Lee, Chi Liu, Dimitris Visvikis
A Review on Low-Dose Emission Tomography Post-Reconstruction Denoising with Neural Network Approaches. ArXiv (2024)
Samantha Linn, Sean D Lawley, Bhargav R Karamched, Zachary P Kilpatrick, Krešimir Josić
Fast decisions reflect biases, slow decisions do not. ArXiv (2024)
Mariyam Khan, Adriaan Ludl, Sean Bankier, Johan Bjorkegren, Tom Michoel
Prediction of causal genes at GWAS loci with pleiotropic gene regulatory effects using sets of correlated instrumental variables. ArXiv (2024)
Qiaosi Tang, Ranjala Ratnayake, Gustavo Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
Morphological Profiling for Drug Discovery in the Era of Deep Learning. ArXiv (2024)
Christian Velten, Brett Bell, Wolfgang A Tomé
Radiosensitization beyond DNA damage: Monte Carlo simulations of realistic nanomaterial biodistributions. ArXiv (2024)