Jan Ellenberg

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 45

Top Venues

Nature methods

Nature

bioRxiv : the preprint server for biology

The Journal of cell biology

European Molecular Biology Laboratory

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Molecular Biology Laboratory May 01 1999

Germany

Head of Unit :: Cell Biology and Biophysics Unit

Publications

Andrea Callegari, Moritz Kueblbeck, Natalia RosalÍa Morero, Beatriz Serrano-Solano, Jan Ellenberg
Rapid generation of homozygous fluorescent knock-in human cells using CRISPR-Cas9 genome editing and validation by automated imaging and digital PCR screening. Nature protocols (2024)
Andrew P Latham, Jeremy O B Tempkin, Shotaro Otsuka, Wanlu Zhang, Jan Ellenberg, Andrej Sali
Integrative spatiotemporal modeling of biomolecular processes: application to the assembly of the Nuclear Pore Complex. bioRxiv : the preprint server for biology (2024)
Andreas Brunner, Natalia RosalÍa Morero, Wanlu Zhang, M Julius Hossain, Marko Lampe, Hannah Pflaumer, Aliaksandr Halavatyi, Jan-Michael Peters, Kai S Beckwith, Jan Ellenberg
Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis. bioRxiv : the preprint server for biology (2024)
Andrew P Latham, Jeremy O B Tempkin, Shotaro Otsuka, Wanlu Zhang, Jan Ellenberg, Andrej Sali
Integrative spatiotemporal modeling of biomolecular processes: application to the assembly of the Nuclear Pore Complex. bioRxiv : the preprint server for biology (2024)
Fan Yang, Carlo Bevilacqua, Sebastian Hambura, Ana Neves, Anusha Gopalan, Koki Watanabe, Matt Govendir, Maria Bernabeu, Jan Ellenberg, Alba Diz-Muñoz, Simone Köhler, Georgia Rapti, Martin Jechlinger, Robert Prevedel
Author Correction: Pulsed stimulated Brillouin microscopy enables high-sensitivity mechanical imaging of live and fragile biological specimens. Nature methods (2024)
Andreas Brunner, Natalia RosalÍa Morero, Wanlu Zhang, M Julius Hossain, Marko Lampe, Hannah Pflaumer, Aliaksandr Halavatyi, Jan-Michael Peters, Kai S Beckwith, Jan Ellenberg
Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis. bioRxiv : the preprint server for biology (2024)
Andrew P Latham, Jeremy O B Tempkin, Shotaro Otsuka, Wanlu Zhang, Jan Ellenberg, Andrej Sali
Integrative spatiotemporal modeling of biomolecular processes: application to the assembly of the Nuclear Pore Complex. bioRxiv : the preprint server for biology (2024)
Andreas Brunner, Natalia RosalÍa Morero, Wanlu Zhang, M Julius Hossain, Marko Lampe, Hannah Pflaumer, Aliaksandr Halavatyi, Jan-Michael Peters, Kai S Beckwith, Jan Ellenberg
Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis. bioRxiv : the preprint server for biology (2024)
Carlo Bevilacqua, Juan Manuel Gomez, Ulla-Maj Fiúza, Chii Jou Chan, Ling Wang, Sebastian Hambura, Manuel Eguren, Jan Ellenberg, Alba Diz-Muñoz, Maria Leptin, Robert Prevedel
High-resolution line-scan Brillouin microscopy for live imaging of mechanical properties during embryo development. Nature methods (2023)
Fan Yang, Carlo Bevilacqua, Sebastian Hambura, Ana Neves, Anusha Gopalan, Koki Watanabe, Matt Govendir, Maria Bernabeu, Jan Ellenberg, Alba Diz-Muñoz, Simone Köhler, Georgia Rapti, Martin Jechlinger, Robert Prevedel
Pulsed stimulated Brillouin microscopy enables high-sensitivity mechanical imaging of live and fragile biological specimens. Nature methods (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Herman K H Fung, Veijo T Salo, Veijo T Salo, Anastasiia Babenko, Ievgeniia Zagoriy, Andreas Brunner, Jan Ellenberg, Christoph W Müller, Sara Cuylen-Haering, Julia Mahamid
Genetically encoded multimeric tags for subcellular protein localization in cryo-EM. Nature methods (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature (2023)
Damian Dalle Nogare, Matthew Hartley, Joran Deschamps, Jan Ellenberg, Florian Jug
Using AI in bioimage analysis to elevate the rate of scientific discovery as a community. Nature methods 20 (7) (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Shotaro Otsuka, Jeremy O B Tempkin, Wanlu Zhang, Antonio Z Politi, Arina Rybina, M Julius Hossain, Moritz Kueblbeck, Andrea Callegari, Birgit Koch, Natalia Rosalia Morero, Andrej Sali, Jan Ellenberg
A quantitative map of nuclear pore assembly reveals two distinct mechanisms. Nature 613 (7944) (2023)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods 20 (1) (2022)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods 20 (1) (2022)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods 20 (1) (2022)
Klaus C Gwosch, Francisco Balzarotti, Jasmin K Pape, Philipp Hoess, Jan Ellenberg, Jonas Ries, Ulf Matti, Roman Schmidt, Steffen J Sahl, Stefan W Hell
Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells. Nature methods (2022)
Siddhant Tripathi, Wah Chiu, Lucy M Collinson, Michele C Darrow, Jan Ellenberg, David Grünwald, Jean-Karim Hériché, Andrii Iudin, Gabriel G Martins, Terry Meehan, Kedar Narayan, Ardan Patwardhan, Matthew Robert Geoffrey Russell, Helen R Saibil, Caterina Strambio-De-Castilla, Jason R Swedlow, Christian Tischer, Virginie Uhlmann, Paul Verkade, Mary Barlow, Omer Ali Bayraktar, Ewan Birney, Cesare Catavitello, Christopher J Cawthorne, Stephan Wagner-Conrad, Elizabeth Duke, Perrine Paul-Gilloteaux, Emmanuel M Gustin, Maria Harkiolaki, Pasi Kankaanpää, Thomas Lemberger, Jo McEntyre, Josh Moore, Andrew W Nicholls, Shuichi Onami, Helen Parkinson, Maddy Parsons, Marina Romanchikova, Nicholas Sofroniew, Jim Swoger, Nadine Utz, Lennard M Voortman, Frances Wong, Peijun Zhang, Gerard J Kleywegt, Alvis Brazma
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. Nature methods 18 (12) (2022)
Isabell Schneider, Marta de Ruijter-Villani, M Julius Hossain, Tom A E Stout, Jan Ellenberg
Dual spindles assemble in bovine zygotes despite the presence of paternal centrosomes. The Journal of cell biology 220 (11) (2021)
Nikolaus Rajewsky, Geneviève Almouzni, Stanislaw A Gorski, Stein Aerts, Bjørt K Kragesteen, Michela G Bertero, Christoph Bock, Annelien L Bredenoord, Giacomo Cavalli, Susanna Chiocca, Hans Clevers, Bart De Strooper, Angelika Eggert, Jan Ellenberg, Xosé M Fernández, Marek Figlerowicz, Susan M Gasser, Norbert Hübner, Jørgen Kjems, Jürgen Arthur Knoblich, Grietje Krabbe, Peter Lichter, Sten Linnarsson, Jean-Christophe Marine, John C Marioni, Marc A Marti-Renom, Mihai M Netea, Dörthe Nickel, Marcelo Nollmann, Halina R Novak, Helen Parkinson, Stefano Piccolo, Inês Pinheiro, Ana Pombo, Christian Popp, Juan I Garaycoechea, Sergio Roman-Roman, Philip Rosenstiel, Joachim L Schultze, Oliver Stegle, Amos Tanay, Giuseppe Testa, Dimitris Thanos, Fabian Joachim Theis, Maria-Elena Torres-Padilla, Alfonso Valencia, Céline Vallot, Alexander van Oudernaarden, Marie Vidal, Thierry Voet, null null
LifeTime and improving European healthcare through cell-based interceptive medicine. Nature 587 (7834) (2020)
Klaus C Gwosch, Jasmin K Pape, Francisco Balzarotti, Philipp Hoess, Jan Ellenberg, Jonas Ries, Stefan W Hell
MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells. Nature methods 17 (2) (2020)
Michelle S Frei, Philipp Hoess, Marko Lampe, Bianca Nijmeijer, Moritz Kueblbeck, Jan Ellenberg, Hubert Wadepohl, Jonas Ries, Stefan Pitsch, Luc Reymond, Kai Johnsson
Photoactivation of silicon rhodamines via a light-induced protonation. Nature communications 10 (1) (2019)
Thomas Schlichthaerle, Maximillian T Strauss, Florian Schueder, Alexander Auer, Bianca Nijmeijer, Moritz Kueblbeck, Vilma Jimenez Sabinina, Jervis V Thevathasan, Jonas Ries, Jan Ellenberg, Ralf Jungmann
Direct Visualization of Single Nuclear Pore Complex Proteins Using Genetically-Encoded Probes for DNA-PAINT. Angewandte Chemie (International ed. in English) 58 (37) (2019)
Jervis Vermal Thevathasan, Maurice Kahnwald, Konstanty Cieśliński, Philipp Hoess, Sudheer Kumar Peneti, Manuel Reitberger, Daniel Heid, Krishna Chaitanya Kasuba, Sarah Janice Hoerner, Yiming Li, Yu-Le Wu, Markus Mund, Ulf Matti, Pedro Matos Pereira, Ricardo Henriques, Bianca Nijmeijer, Moritz Kueblbeck, Vilma Jimenez Sabinina, Jan Ellenberg, Jonas Ries
Nuclear pores as versatile reference standards for quantitative superresolution microscopy. Nature methods 16 (10) (2019)
Claudia Cattoglio, Iryna Pustova, Nike Walther, Jaclyn J Ho, Merle Hantsche-Grininger, Carla J Inouye, M Julius Hossain, Gina M Dailey, Jan Ellenberg, Xavier Darzacq, Robert Tse Nan Tjian, Anders S Hansen
Determining cellular CTCF and cohesin abundances to constrain 3D genome models. eLife 8 (2019)
Isabell Schneider, Jan Ellenberg
Mysteries in embryonic development: How can errors arise so frequently at the beginning of mammalian life? PLoS biology 17 (3) (2019)
Johann Holzmann, Antonio Z Politi, Kota Nagasaka, Merle Hantsche-Grininger, Nike Walther, Birgit Koch, Johannes Fuchs, Gerhard Dürnberger, Wen Tang, Rene Ladurner, Roman R Stocsits, Georg A Busslinger, Bela Novak, Karl Mechtler, Iain Finley Davidson, Jan Ellenberg, Jan-Michael Peters
Absolute quantification of cohesin, CTCF and their regulators in human cells. eLife 8 (2019)
Antonio Z Politi, Yin Cai, Nike Walther, M Julius Hossain, Birgit Koch, Malte Wachsmuth, Jan Ellenberg
Quantitative mapping of fluorescently tagged cellular proteins using FCS-calibrated four-dimensional imaging. Nature protocols 13 (6) (2018)
Yiming Li, Markus Mund, Philipp Hoess, Joran Deschamps, Ulf Matti, Bianca Nijmeijer, Vilma Jimenez Sabinina, Jan Ellenberg, Ingmar Schoen, Jonas Ries
Real-time 3D single-molecule localization using experimental point spread functions. Nature methods 15 (5) (2018)
Sebastian Strauss, Philipp C Nickels, Maximilian T Strauss, Vilma Jimenez Sabinina, Jan Ellenberg, Jeffrey D Carter, Shashi Gupta, Nebojsa Janjic, Ralf Jungmann
Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging. Nature methods 15 (9) (2018)
Nike Walther, M Julius Hossain, Antonio Z Politi, Birgit Koch, Moritz Kueblbeck, Øyvind Ødegård-Fougner, Marko Lampe, Jan Ellenberg
A quantitative map of human Condensins provides new insights into mitotic chromosome architecture. The Journal of cell biology 217 (7) (2018)
Judith Reichmann, Bianca Nijmeijer, M Julius Hossain, Manuel Eguren, Isabell Schneider, Antonio Z Politi, M Julia Roberti, Lars Hufnagel, Takashi Hiiragi, Jan Ellenberg
Dual-spindle formation in zygotes keeps parental genomes apart in early mammalian embryos. Science (New York, N.Y.) 361 (6398) (2018)
Birgit Koch, Bianca Nijmeijer, Moritz Kueblbeck, Yin Cai, Nike Walther, Jan Ellenberg
Generation and validation of homozygous fluorescent knock-in cells using CRISPR-Cas9 genome editing. Nature protocols 13 (6) (2018)
Wanqing Xiang, M Julia Roberti, Jean-Karim Hériché, Sébastien Huet, Stephanie Alexander, Jan Ellenberg
Correlative live and super-resolution imaging reveals the dynamic structure of replication domains. The Journal of cell biology 217 (6) (2018)
Shotaro Otsuka, Anna M Steyer, Martin Schorb, Jean-Karim Hériché, M Julius Hossain, Suruchi Sethi, Moritz Kueblbeck, Yannick Schwab, Martin Beck, Jan Ellenberg
Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings. Nature structural & molecular biology 25 (1) (2017)
Shotaro Otsuka, Jan Ellenberg
Mechanisms of nuclear pore complex assembly - two different ways of building one molecular machine. FEBS letters 592 (4) (2017)
Shotaro Otsuka, Khanh Huy Bui, Martin Schorb, M Julius Hossain, Antonio Z Politi, Birgit Koch, Mikhail Eltsov, Martin Beck, Jan Ellenberg
Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope. eLife 5 (2016)
Ronni S Pedersen, Gopal Karemore, Thorkell Gudjonsson, Maj-Britt Rask, Beate Neumann, Jean-Karim Hériché, Rainer Pepperkok, Jan Ellenberg, Daniel Wolfram Gerlich, Jiri Lukas, Claudia Lukas
Profiling DNA damage response following mitotic perturbations. Nature communications 7 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jan Ellenberg