Joseph Zaia

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 61

Top Venues

Analytical chemistry

Analytical and bioanalytical chemistry

FEBS letters

Molecular & cellular proteomics : MCP

Boston University Medical Campus

Massachusetts Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Boston University Medical Campus

United States

Professor :: Biochemistry

Education History

Massachusetts Institute of Technology

United States

PHD :: Chemistry

Publications

William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry 96 (3) (2024)
Joshua A Klein, Luis Carvalho, Joseph Zaia
Expanding N-glycopeptide identifications by modeling fragmentation, elution, and glycome connectivity. Nature communications 15 (1) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry 96 (3) (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Mary Rachel Nalehua, Joseph Zaia
A critical evaluation of ultrasensitive single-cell proteomics strategies. Analytical and bioanalytical chemistry (2024)
Chaoshuang Xia, Elias Mernie, Joseph Zaia, Catherine E Costello, Cheng Lin
Accurate Collisional Cross Section Measurement by Multipass Cyclic Ion Mobility Spectrometry. Analytical chemistry (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry 96 (3) (2024)
Mary Rachel Nalehua, Joseph Zaia
A critical evaluation of ultrasensitive single-cell proteomics strategies. Analytical and bioanalytical chemistry 416 (9) (2024)
Joshua A Klein, Luis Carvalho, Joseph Zaia
Expanding N-glycopeptide identifications by modeling fragmentation, elution, and glycome connectivity. Nature communications 15 (1) (2024)
Mary Rachel Nalehua, Joseph Zaia
A critical evaluation of ultrasensitive single-cell proteomics strategies. Analytical and bioanalytical chemistry 416 (9) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry 96 (3) (2024)
Chaoshuang Xia, Elias Mernie, Joseph Zaia, Catherine E Costello, Cheng Lin
Accurate Collisional Cross Section Measurement by Multipass Cyclic Ion Mobility Spectrometry. Analytical chemistry 96 (29) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry (2024)
Joshua A Klein, Luis Carvalho, Joseph Zaia
Expanding N-glycopeptide identifications by modeling fragmentation, elution, and glycome connectivity. Nature communications 15 (1) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry 96 (3) (2024)
Ruiqing Li, Chaoshuang Xia, Shuye Wu, Margaret J Downs, Haowei Tong, Nafisa Tursumamat, Joseph Zaia, Catherine E Costello, Cheng Lin, Juan Wei
Direct and Detailed Site-Specific Glycopeptide Characterization by Higher-Energy Electron-Activated Dissociation Tandem Mass Spectrometry. Analytical chemistry 96 (3) (2024)
William Edwin Hackett, Deborah Chang, Luis Carvalho, Joseph Zaia
RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein composition that occur during biological processes. Bioinformatics advances 4 (1) (2024)
Mary Rachel Nalehua, Joseph Zaia
A critical evaluation of ultrasensitive single-cell proteomics strategies. Analytical and bioanalytical chemistry 416 (9) (2024)
Nava Zaarur, Anatoli B Meriin, Maneet Singh, Raghuveera K Goel, Joseph Zaia, Konstantin V Kandror
Akt may associate with insulin-responsive vesicles via interaction with sortilin. FEBS letters (2023)
Nava Zaarur, Anatoli B Meriin, Maneet Singh, Raghuveera K Goel, Joseph Zaia, Konstantin V Kandror
Akt may associate with insulin-responsive vesicles via interaction with sortilin. FEBS letters 598 (4) (2023)
Joseph Zaia
Recent advances and future developments in ultrasensitive omics. Analytical and bioanalytical chemistry (2023)
Nava Zaarur, Anatoli B Meriin, Maneet Singh, Raghuveera K Goel, Joseph Zaia, Konstantin V Kandror
Akt may associate with insulin-responsive vesicles via interaction with sortilin. FEBS letters (2023)
Joseph Zaia
The 2022 Nobel Prize in Chemistry for the development of click chemistry and bioorthogonal chemistry. Analytical and bioanalytical chemistry 415 (4) (2023)
Nava Zaarur, Anatoli B Meriin, Maneet Singh, Raghuveera K Goel, Joseph Zaia, Konstantin V Kandror
Akt may associate with insulin-responsive vesicles via interaction with sortilin. FEBS letters 598 (4) (2023)
Shoumita Dasgupta, Joseph Zaia
Antiracism in biomolecular research. Analytical and bioanalytical chemistry (2023)
Joseph Zaia
The 2022 Nobel Prize in Chemistry for the development of click chemistry and bioorthogonal chemistry. Analytical and bioanalytical chemistry 415 (4) (2023)
Joseph Zaia
The 2022 Nobel Prize in Chemistry for the development of click chemistry and bioorthogonal chemistry. Analytical and bioanalytical chemistry (2023)
Nava Zaarur, Anatoli B Meriin, Maneet Singh, Raghuveera K Goel, Joseph Zaia, Konstantin V Kandror
Akt may associate with insulin-responsive vesicles via interaction with sortilin. FEBS letters (2023)
Juan Wei, Dimitris Papanastasiou, Mariangela Kosmopoulou, Athanasios Smyrnakis, Pengyu Hong, Nafisa Tursumamat, Joshua A Klein, Chaoshuang Xia, Yang Tang, Joseph Zaia, Catherine E Costello, Cheng Lin
De novo glycan sequencing by electronic excitation dissociation MS 2 -guided MS 3 analysis on an Omnitrap-Orbitrap hybrid instrument. Chemical science 14 (24) (2023)
Joseph Zaia
The 2022 Nobel Prize in Chemistry for the development of click chemistry and bioorthogonal chemistry. Analytical and bioanalytical chemistry 415 (4) (2023)
Nava Zaarur, Anatoli B Meriin, Maneet Singh, Raghuveera K Goel, Joseph Zaia, Konstantin V Kandror
Akt may associate with insulin-responsive vesicles via interaction with sortilin. FEBS letters 598 (4) (2023)
Gustavo J Cavallero, Yan Wang, Charles Nwosu, Sheng Gu, Muthuraman Meiyappan, Joseph Zaia
O-Glycoproteomic analysis of engineered heavily glycosylated fusion proteins using nanoHILIC-MS. Analytical and bioanalytical chemistry 414 (27) (2022)
Tin Long Wong, Brian P Mooney, Gustavo J Cavallero, Minhui Guan, Lei Li, Joseph Zaia, Xiu-Feng Wan
Glycoproteomic Analyses of Influenza A Viruses Using timsTOF Pro MS. Journal of proteome research (2022)
Gustavo J Cavallero, Joseph Zaia
Resolving Heparan Sulfate Oligosaccharide Positional Isomers Using Hydrophilic Interaction Liquid Chromatography-Cyclic Ion Mobility Mass Spectrometry. Analytical chemistry 94 (5) (2022)
Guinevere S M Lageveen-Kammeijer, Erdmann Rapp, Deborah Chang, Pauline M Rudd, Carsten Kettner, Joseph Zaia
The minimum information required for a glycomics experiment (MIRAGE): reporting guidelines for capillary electrophoresis. Glycobiology 32 (7) (2022)
Margaret Downs, Manveen K Sethi, Rekha Raghunathan, Matthew D Layne, Joseph Zaia
Matrisome changes in Parkinson's disease. Analytical and bioanalytical chemistry 414 (9) (2022)
Joseph Zaia
Analytical characterization of viruses. Analytical and bioanalytical chemistry 413 (29) (2021)
Pradeep Chopra, Apoorva Joshi, Jiandong Wu, Weigang Lu, Tejabhiram Yadavalli, Margreet A Wolfert, Deepak Shukla, Joseph Zaia, Geert-Jan Boons
The 3-O-sulfation of heparan sulfate modulates protein binding and lyase degradation. Proceedings of the National Academy of Sciences of the United States of America 118 (3) (2021)
Rebeca Kawahara, Anastasia Chernykh, Kathirvel Alagesan, Marshall Bern, Wei-Qian Cao, Robert J Chalkley, Kai Cheng, Matthew S F Choo, Nathan Edwards, Radoslav Goldman, Marcus Hoffmann, Yingwei Hu, Yifan Huang, Jin Young Kim, Doron Kletter, Benoit Liquet, Mingqi Liu, Yehia Mechref, Bo Meng, Sriram Neelamegham, Terry Nguyen-Khuong, Jonas Nilsson, Adam Pap, Gun Wook Park, Benjamin L Parker, Cassandra L Pegg, Josef M Penninger, Toan K Phung, Markus Pioch, Erdmann Rapp, Enes Sakalli, Miloslav Sanda, Benjamin L Schulz, Nichollas E Scott, Georgy Sofronov, Johannes Stadlmann, Sergey Y Vakhrushev, Christina M Woo, Hung-Yi Wu, Peng-Yuan Yang, Wantao Ying, Hui Zhang, Yong Zhang, Jingfu Zhao, Joseph Zaia, Stuart M Haslam, Giuseppe Palmisano, Jong Shin Yoo, Göran Larson, Kai-Hooi Khoo, Katalin F Medzihradszky, Daniel Kolarich, Nicolle H Packer, Morten Thaysen-Andersen
Author Correction: Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature methods (2021)
Deborah Chang, Joshua A Klein, Mary Rachel Nalehua, William Edwin Hackett, Joseph Zaia
Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein. Analytical and bioanalytical chemistry 413 (29) (2021)
William Edwin Hackett, Joseph Zaia
The Need for Community Standards to Enable Accurate Comparison of Glycoproteomics Algorithm Performance. Molecules (Basel, Switzerland) 26 (16) (2021)
Marissa L Maciej-Hulme, Eamon Dubaissi, Chun Shao, Joseph Zaia, Enrique Amaya, Sabine L Flitsch, Catherine L R Merry
Selective Inhibition of Heparan Sulphate and Not Chondroitin Sulphate Biosynthesis by a Small, Soluble Competitive Inhibitor. International journal of molecular sciences 22 (13) (2021)
Rebeca Kawahara, Anastasia Chernykh, Kathirvel Alagesan, Marshall Bern, Wei-Qian Cao, Robert J Chalkley, Kai Cheng, Matthew S F Choo, Nathan Edwards, Radoslav Goldman, Marcus Hoffmann, Yingwei Hu, Yifan Huang, Jin Young Kim, Doron Kletter, Benoit Liquet, Mingqi Liu, Yehia Mechref, Bo Meng, Sriram Neelamegham, Terry Nguyen-Khuong, Jonas Nilsson, Adam Pap, Gun Wook Park, Benjamin L Parker, Cassandra L Pegg, Josef M Penninger, Toan K Phung, Markus Pioch, Erdmann Rapp, Enes Sakalli, Miloslav Sanda, Benjamin L Schulz, Nichollas E Scott, Georgy Sofronov, Johannes Stadlmann, Sergey Y Vakhrushev, Christina M Woo, Hung-Yi Wu, Peng-Yuan Yang, Wantao Ying, Hui Zhang, Yong Zhang, Jingfu Zhao, Joseph Zaia, Stuart M Haslam, Giuseppe Palmisano, Jong Shin Yoo, Göran Larson, Kai-Hooi Khoo, Katalin F Medzihradszky, Daniel Kolarich, Nicolle H Packer, Morten Thaysen-Andersen
Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature methods 18 (11) (2021)
Joshua A Klein, Joseph Zaia
Relative Retention Time Estimation Improves N-Glycopeptide Identifications by LC-MS/MS. Journal of proteome research 19 (5) (2020)
Celia M Torres-Arancivia, Deborah Chang, William E Hackett, Joseph Zaia, Lawreen H Connors
Glycosylation of Serum Clusterin in Wild-Type Transthyretin-Associated (ATTRwt) Amyloidosis: A Study of Disease-Associated Compositional Features Using Mass Spectrometry Analyses. Biochemistry 59 (45) (2020)
Joshua A Klein, Joseph Zaia
A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. Biochemistry 59 (34) (2019)
Jiandong Wu, Juan Wei, Pradeep Chopra, Geert-Jan Boons, Cheng Lin, Joseph Zaia
Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS. Analytical chemistry 91 (18) (2019)
Juan Wei, Jiandong Wu, Yang Tang, Mark E Ridgeway, Melvin A Park, Catherine E Costello, Joseph Zaia, Cheng Lin
Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS. Analytical chemistry 91 (4) (2019)
Joshua A Klein, Joseph Zaia
glypy: An Open Source Glycoinformatics Library. Journal of proteome research 18 (9) (2019)
Juan Wei, Yang Tang, Yu Bai, Joseph Zaia, Catherine E Costello, Pengyu Hong, Cheng Lin
Toward Automatic and Comprehensive Glycan Characterization by Online PGC-LC-EED MS/MS. Analytical chemistry 92 (1) (2019)
Kshitij Khatri, Yi Pu, Joshua A Klein, Juan Wei, Catherine E Costello, Cheng Lin, Joseph Zaia
Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides. Journal of the American Society for Mass Spectrometry 29 (6) (2018)
Martin van Eijk, Michael J Rynkiewicz, Kshitij Khatri, Nancy Leymarie, Joseph Zaia, Mitchell R White, Kevan L Hartshorn, Tanya R Cafarella, Irma van Die, Martin Hessing, Barbara A Seaton, Henk P Haagsman
Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus. The Journal of biological chemistry 293 (27) (2018)
Joshua A Klein, Le Meng, Joseph Zaia
Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides. Molecular & cellular proteomics : MCP 17 (8) (2018)
Joshua A Klein, Joseph Zaia
psims - A Declarative Writer for mzML and mzIdentML for Python. Molecular & cellular proteomics : MCP 18 (3) (2018)
Rekha Raghunathan, Nicole K Polinski, Joshua A Klein, John D Hogan, Chun Shao, Kshitij Khatri, Deborah Leon, Mark E McComb, Fredric P Manfredsson, Caryl E Sortwell, Joseph Zaia
Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway. Molecular & cellular proteomics : MCP 17 (9) (2018)
John D Hogan, Joshua A Klein, Jiandong Wu, Pradeep Chopra, Geert-Jan Boons, Luis Carvalho, Cheng Lin, Joseph Zaia
Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra. Molecular & cellular proteomics : MCP 17 (7) (2018)
Jiandong Wu, Juan Wei, John D Hogan, Pradeep Chopra, Apoorva Joshi, Weigang Lu, Joshua Klein, Geert-Jan Boons, Cheng Lin, Joseph Zaia
Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides. Journal of the American Society for Mass Spectrometry 29 (6) (2018)
Rebecca S Glaskin, Kshitij Khatri, Qi Wang, Joseph Zaia, Catherine E Costello
Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS. Analytical chemistry 89 (8) (2017)
Kshitij Khatri, Joshua A Klein, John R Haserick, Deborah R Leon, Catherine E Costello, Mark E McComb, Joseph Zaia
Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides. Analytical chemistry 89 (12) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Joseph Zaia