Karsten Hokamp

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 22

Top Venues

Trinity College Dublin

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Trinity College Dublin Oct 01 2005

Ireland

Bioinformatics Research Officer :: Genetics

Publications

Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics 56 (6) (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics 56 (6) (2024)
Fergal J Hamrock, Daniel Ryan, Ali Shaibah, Anna S Ershova, Aalap Mogre, Maha M Sulimani, Safa Ben Taarit, Sarah Reichardt, Karsten Hokamp, Alexander J Westermann, Carsten Kröger
Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO. Nucleic acids research (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics 56 (6) (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics 56 (6) (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics 56 (6) (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics (2024)
Benjamin X Wang, Dmitry Leshchiner, Lijuan Luo, Miles Tuncel, Karsten Hokamp, Jay C D Hinton, Denise M Monack
High-throughput fitness experiments reveal specific vulnerabilities of human-adapted Salmonella during stress and infection. Nature genetics 56 (6) (2024)
Nomi L Harris, Christopher J Fields, Karsten Hokamp, Jérémy Just, Radhika Khetani, Jessica Maia, Hervé Ménager, Monica C Munoz-Torres, Deepak R Unni, Jason Williams
BOSC 2023, the 24th annual Bioinformatics Open Source Conference. F1000Research 12 (2023)
Brenda Lee, Michael C Church, Karsten Hokamp, Mohamed M Alhussain, Atif A Bamagoos, Alastair B Fleming
Systematic analysis of tup1 and cyc8 mutants reveals distinct roles for TUP1 and CYC8 and offers new insight into the regulation of gene transcription by the yeast Tup1-Cyc8 complex. PLoS genetics 19 (8) (2023)
Roberto de la Cerda García-Caro, Karsten Hokamp, Fiona M Roche, Georgia Thompson, Soukaina Timouma, Daniela Delneri, Ursula Bond
Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation. PLoS genetics 18 (4) (2022)
Nomi L Harris, Karsten Hokamp, Hervé Ménager, Monica Munoz-Torres, Deepak R Unni, Nicole Vasilevsky, Jason Williams
BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference. F1000Research 11 (2022)
Clive Drakeford, Sonia Águila, Fiona Roche, Karsten Hokamp, Judicael Fazavana, Mariana P Cervantes, Annie M Curtis, Heike C Hawerkamp, Sukhraj Pal Singh Dhami, Hugo Charles-Messance, Emer E Hackett, Alain Chion, Soracha Ward, Azaz Ahmad, Ingmar Schoen, Eamon Breen, Joe Keane, Ross Murphy, Roger J S Preston, Jamie M O'Sullivan, Frederick J Sheedy, Padraic G Fallon, James S O'Donnell
von Willebrand factor links primary hemostasis to innate immunity. Nature communications 13 (1) (2022)
Roberto de la Cerda García-Caro, Georgia Thompson, Penghan Zhang, Karsten Hokamp, Fiona Roche, Silvia Carlin, Urska Vrhovsek, Ursula Bond
Enhanced flavour profiles through radicicol induced genomic variation in the lager yeasts, Saccharomyces pastorianus. Yeast (Chichester, England) 39 (10) (2022)
Nomi L Harris, Peter J A Cock, Christopher J Fields, Karsten Hokamp, Jessica Maia, Monica Munoz-Torres, Malvika Sharan, Jason Williams
BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference. F1000Research 10 (2021)
Colin Kenny, Elaine O'Meara, Mevlüt Ulaş, Karsten Hokamp, Maureen J O'Sullivan
Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor. Cancers 13 (11) (2021)
TuShun R Powers, Amanda L Haeberle, Alexander V Predeus, Disa L Hammarlöf, Jennifer A Cundiff, Zeus Saldaña-Ahuactzi, Karsten Hokamp, Jay C D Hinton, Leigh A Knodler
Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica. PLoS pathogens 17 (8) (2021)
Nomi L Harris, Peter J A Cock, Christopher J Fields, Karsten Hokamp, Jessica Maia, Monica C Munoz-Torres, Morgan Taschuk, Yo Yehudi
The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020). F1000Research 9 (2020)
Nomi L Harris, Peter J A Cock, Christopher J Fields, Bastian Greshake Tzovoras, Michael Heuer, Karsten Hokamp, Monica Munoz-Torres, Alexander Peltzer, Bastian Rieck, Heather Wiencko, Yo Yehudi
BOSC 2019, the 20th annual Bioinformatics Open Source Conference. F1000Research 8 (2019)
Rocío Canals, Disa L Hammarlöf, Carsten Kröger, Siân V Owen, Wai Yee Fong, Lizeth Lacharme-Lora, Xiaojun Zhu, Nicolas Wenner, Sarah E Carden, Jared Honeycutt, Denise M Monack, Robert A Kingsley, Philip J Brownridge, Roy R Chaudhuri, Will P M Rowe, Alexander V Predeus, Karsten Hokamp, Melita A Gordon, Jay C D Hinton
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580. PLoS biology 17 (1) (2019)
Nomi L Harris, Heather Wiencko, Brad Chapman, Peter J A Cock, Karsten Hokamp, Hilmar Lapp, Christopher J Fields, Bastian Greshake Tzovoras
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). F1000Research 7 (2018)

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Publication Activity (10 Years)

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Karsten Hokamp