Souvik Seal

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 20

Top Topics

High Throughput

Top Venues

Journal of proteome research

PLoS computational biology

Bioinformatics advances

This page only lists publications with an associated author ORCID identifier.

Publications

Tusharkanti Ghosh, Ryan M Baxter, Souvik Seal, Victor G Lui, Pratyaydipta Rudra, Thao Vu, Elena W Y Hsieh, Debashis Ghosh
cytoKernel: Robust kernel embeddings for assessing differential expression of single cell data. bioRxiv : the preprint server for biology (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research 23 (4) (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research 23 (4) (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research 23 (4) (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research 23 (4) (2024)
Souvik Seal, Brian Neelon, Peggi M Angel, Elizabeth C O'Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S Mehta, Kristin Wallace, Alexander V Alekseyenko
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of proteome research 23 (4) (2024)
Souvik Seal, Benjamin G Bitler, Debashis Ghosh
SMASH: Scalable Method for Analyzing Spatial Heterogeneity of genes in spatial transcriptomics data. PLoS genetics 19 (10) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Souvik Seal, Thao Vu, Tusharkanti Ghosh, Julia Wrobel, Debashis Ghosh
DenVar: density-based variation analysis of multiplex imaging data. Bioinformatics advances 2 (1) (2022)
Souvik Seal, Thao Vu, Tusharkanti Ghosh, Julia Wrobel, Debashis Ghosh
DenVar: density-based variation analysis of multiplex imaging data. Bioinformatics advances 2 (1) (2022)
Souvik Seal, Abhirup Datta, Saonli Basu
Efficient estimation of SNP heritability using Gaussian predictive process in large scale cohort studies. PLoS genetics 18 (4) (2022)
Souvik Seal, Julia Wrobel, Amber M Johnson, Raphael A Nemenoff, Erin L Schenk, Benjamin G Bitler, Kimberly R Jordan, Debashis Ghosh
On clustering for cell-phenotyping in multiplex immunohistochemistry (mIHC) and multiplexed ion beam imaging (MIBI) data. BMC research notes 15 (1) (2022)
Souvik Seal, Debashis Ghosh
MIAMI: mutual information-based analysis of multiplex imaging data. Bioinformatics (Oxford, England) 38 (15) (2022)
Souvik Seal, Jeffrey A Boatman, Matt McGue, Saonli Basu
Modeling the Dependence Structure in Genome Wide Association Studies of Binary Phenotypes in Family Data. Behavior genetics 50 (6) (2020)