Kei-Ichi Okazaki

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 20

Top Venues

Nature communications

ACS sensors

The journal of physical chemistry letters

The journal of physical chemistry. B

分子科学研究所/Institute for Molecular Science

This page only lists publications with an associated author ORCID identifier.

Affiliation History

分子科学研究所/Institute for Molecular Science Jun 01 2016

Japan

特任准教授/Project Associate Professor :: 理論・計算分子科学研究領域/Department of Theoretical and Computational Molecular Science

Publications

Tomoki Matsuda, Shinya Sakai, Kei-Ichi Okazaki, Takeharu Nagai
Improvement of the Green-Red Förster Resonance Energy Transfer-Based Ca 2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor. ACS sensors 9 (4) (2024)
Jun Ohnuki, Titouan Jaunet-Lahary, Atsuko Yamashita, Kei-Ichi Okazaki
Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT. The journal of physical chemistry letters (2024)
Tomoki Matsuda, Shinya Sakai, Kei-Ichi Okazaki, Takeharu Nagai
Improvement of the Green-Red Förster Resonance Energy Transfer-Based Ca 2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor. ACS sensors (2024)
Tomoki Matsuda, Shinya Sakai, Kei-Ichi Okazaki, Takeharu Nagai
Improvement of the Green-Red Förster Resonance Energy Transfer-Based Ca 2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor. ACS sensors 9 (4) (2024)
Tomoki Matsuda, Shinya Sakai, Kei-Ichi Okazaki, Takeharu Nagai
Improvement of the Green-Red Förster Resonance Energy Transfer-Based Ca 2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor. ACS sensors 9 (4) (2024)
Tomoki Matsuda, Shinya Sakai, Kei-Ichi Okazaki, Takeharu Nagai
Improvement of the Green-Red Förster Resonance Energy Transfer-Based Ca 2+ Indicator by Using the Green Fluorescent Protein, Gamillus, with a Trans Chromophore as the Donor. ACS sensors 9 (4) (2024)
Jun Ohnuki, Kei-Ichi Okazaki
Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK. The journal of physical chemistry. B (2024)
Jun Ohnuki, Titouan Jaunet-Lahary, Atsuko Yamashita, Kei-Ichi Okazaki
Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT. The journal of physical chemistry letters 15 (3) (2024)
Jun Ohnuki, Kei-Ichi Okazaki
Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK. The journal of physical chemistry. B 128 (31) (2024)
Jun Ohnuki, Titouan Jaunet-Lahary, Atsuko Yamashita, Kei-Ichi Okazaki
Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT. The journal of physical chemistry letters 15 (3) (2024)
Titouan Jaunet-Lahary, Tatsuro Shimamura, Masahiro Hayashi, Norimichi Nomura, Kouta Hirasawa, Tetsuya Shimizu, Masao Yamashita, Naotaka Tsutsumi, Yuta Suehiro, Keiichi Kojima, Yuki Sudo, Takashi Tamura, Hiroko Iwanari, Takao Hamakubo, So Iwata, Kei-Ichi Okazaki, Teruhisa Hirai, Atsuko Yamashita
Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nature communications 14 (1) (2023)
Ryohei Kobayashi, Hiroshi Ueno, Kei-Ichi Okazaki, Hiroyuki Noji
Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase. Nature communications 14 (1) (2023)
Maho Yagi-Utsumi, Haruko Miura, Christian Ganser, Hiroki Watanabe, Methanee Hiranyakorn, Tadashi Satoh, Takayuki Uchihashi, Koichi Kato, Kei-Ichi Okazaki, Kazuhiro Aoki
Molecular Design of FRET Probes Based on Domain Rearrangement of Protein Disulfide Isomerase for Monitoring Intracellular Redox Status. International journal of molecular sciences 24 (16) (2023)
Ryohei Kobayashi, Hiroshi Ueno, Kei-Ichi Okazaki, Hiroyuki Noji
Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase. Nature communications 14 (1) (2023)
Titouan Jaunet-Lahary, Tatsuro Shimamura, Masahiro Hayashi, Norimichi Nomura, Kouta Hirasawa, Tetsuya Shimizu, Masao Yamashita, Naotaka Tsutsumi, Yuta Suehiro, Keiichi Kojima, Yuki Sudo, Takashi Tamura, Hiroko Iwanari, Takao Hamakubo, So Iwata, Kei-Ichi Okazaki, Teruhisa Hirai, Atsuko Yamashita
Author Correction: Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nature communications 14 (1) (2023)
Yusuke Mori, Kei-Ichi Okazaki, Toshifumi Mori, Kang Kim, Nobuyuki Matubayasi
Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide. The Journal of chemical physics 153 (5) (2021)
Kei-Ichi Okazaki, Akihiko Nakamura, Ryota Iino
Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motors: Application to Processive Chitinase. The journal of physical chemistry. B 124 (30) (2020)
Kei-Ichi Okazaki, David Wöhlert, Judith Warnau, Hendrik Jung, Özkan Yildiz, Werner Kühlbrandt, Gerhard Hummer
Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting. Nature communications 10 (1) (2019)
Md Iqbal Mahmood, Hiroshi Noguchi, Kei-Ichi Okazaki
Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations. Scientific reports 9 (1) (2019)
Akihiko Nakamura, Kei-Ichi Okazaki, Tadaomi Furuta, Minoru Sakurai, Ryota Iino
Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin. Nature communications 9 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kei-Ichi Okazaki