Koichi Kato

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 61

Top Venues

International journal of molecular sciences

Communications biology

International immunology

Molecules (Basel, Switzerland)

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

This page only lists publications with an associated author ORCID identifier.

Affiliation History

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems Apr 01 2008

Japan

教授/Professor :: 創成研究領域/Department of Creative Research

Publications

Saeko Yanaka, Atsuji Kodama, Shigetaka Nishiguchi, Rina Fujita, Jiana Shen, Pornthip Boonsri, Duckyong Sung, Yukiko Isono, Hirokazu Yagi, Yohei Miyanoiri, Takayuki Uchihashi, Koichi Kato
Identification of potential C1-binding sites in the immunoglobulin CL domains. International immunology 36 (8) (2024)
Marietta Fabiano, Naoto Oikawa, Anja Kerksiek, Jun-Ichi Furukawa, Hirokazu Yagi, Koichi Kato, Ulrich Schweizer, Wim Annaert, Jongkyun Kang, Jie Shen, Dieter Lütjohann, Jochen Walter
Presenilin Deficiency Results in Cellular Cholesterol Accumulation by Impairment of Protein Glycosylation and NPC1 Function. International journal of molecular sciences 25 (10) (2024)
Tadashi Satoh, Maho Yagi-Utsumi, Nozomi Ishii, Tsunehiro Mizushima, Hirokazu Yagi, Ryuichi Kato, Yuriko Tachida, Hiroaki Tateno, Ichiro Matsuo, Koichi Kato, Tadashi Suzuki, Yukiko Yoshida
Structural basis of sugar recognition by SCF FBS2 ubiquitin ligase involved in NGLY1 deficiency. FEBS letters (2024)
Marietta Fabiano, Naoto Oikawa, Anja Kerksiek, Jun-Ichi Furukawa, Hirokazu Yagi, Koichi Kato, Ulrich Schweizer, Wim Annaert, Jongkyun Kang, Jie Shen, Dieter Lütjohann, Jochen Walter
Presenilin Deficiency Results in Cellular Cholesterol Accumulation by Impairment of Protein Glycosylation and NPC1 Function. International journal of molecular sciences 25 (10) (2024)
Saeko Yanaka, Atsuji Kodama, Shigetaka Nishiguchi, Rina Hiramine, Jiana Shen, Pornthip Boonsri, Duckyong Sung, Yukiko Isono, Hirokazu Yagi, Yohei Miyanoiri, Takayuki Uchihashi, Koichi Kato
Identification of potential C1-binding sites in the immunoglobulin CL domains. International immunology (2024)
Saeko Yanaka, Atsuji Kodama, Shigetaka Nishiguchi, Rina Fujita, Jiana Shen, Pornthip Boonsri, Duckyong Sung, Yukiko Isono, Hirokazu Yagi, Yohei Miyanoiri, Takayuki Uchihashi, Koichi Kato
Identification of potential C1-binding sites in the immunoglobulin CL domains. International immunology 36 (8) (2024)
Kiyoko F Aoki-Kinoshita, Hiromune Ando, Kiyohiko Angata, Morihisa Fujita, Jun-Ichi Furukawa, Hiroyuki Kaji, Koichi Kato, Ken Kitajima, Yasuhiko Kizuka, Yusuke Matsui, Kazuki Nakajima, Shoko Nishihara, Tetsuya Okajima, Kazuma Sakamoto, Chihiro Sato, Morten Thaysen-Andersen, Akira Togayachi, Hirokazu Yagi, Kenji Kadomatsu
The Human Glycome Atlas Project for cataloging all glycan-related omics data in human. Glycobiology (2024)
Marietta Fabiano, Naoto Oikawa, Anja Kerksiek, Jun-Ichi Furukawa, Hirokazu Yagi, Koichi Kato, Ulrich Schweizer, Wim Annaert, Jongkyun Kang, Jie Shen, Dieter Lütjohann, Jochen Walter
Presenilin Deficiency Results in Cellular Cholesterol Accumulation by Impairment of Protein Glycosylation and NPC1 Function. International journal of molecular sciences 25 (10) (2024)
Saeko Yanaka, Atsuji Kodama, Shigetaka Nishiguchi, Rina Fujita, Jiana Shen, Pornthip Boonsri, Duckyong Sung, Yukiko Isono, Hirokazu Yagi, Yohei Miyanoiri, Takayuki Uchihashi, Koichi Kato
Identification of potential C1-binding sites in the immunoglobulin CL domains. International immunology 36 (8) (2024)
Daisuke Koga, Satoshi Kusumi, Hirokazu Yagi, Koichi Kato
Three-dimensional analysis of the intracellular architecture by scanning electron microscopy. Microscopy (Oxford, England) (2023)
Maho Yagi-Utsumi, Satoru G Itoh, Hisashi Okumura, Katsuhiko Yanagisawa, Koichi Kato, Katsuyuki Nishimura
The Double-Layered Structure of Amyloid-β Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization. ACS chemical neuroscience (2023)
Methanee Hiranyakorn, Maho Yagi-Utsumi, Saeko Yanaka, Naoya Ohtsuka, Norie Momiyama, Tadashi Satoh, Koichi Kato
Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains. International journal of molecular sciences 24 (7) (2023)
Saeko Yanaka, Maho Yagi-Utsumi, Koichi Kato, Kunihiro Kuwajima
The B domain of protein A retains residual structures in 6 M guanidinium chloride as revealed by hydrogen/deuterium-exchange NMR spectroscopy. Protein science : a publication of the Protein Society 32 (3) (2023)
Yu-Chun Chien, Yong-Sheng Wang, Deepa Sridharan, Chu-Wei Kuo, Chih-Ta Chien, Takayuki Uchihashi, Koichi Kato, Takashi Angata, Tzu-Ching Meng, Shang-Te Danny Hsu, Kai-Hooi Khoo
High Density of N- and O-Glycosylation Shields and Defines the Structural Dynamics of the Intrinsically Disordered Ectodomain of Receptor-type Protein Tyrosine Phosphatase Alpha. JACS Au 3 (7) (2023)
Maho Yagi-Utsumi, Haruko Miura, Christian Ganser, Hiroki Watanabe, Methanee Hiranyakorn, Tadashi Satoh, Takayuki Uchihashi, Koichi Kato, Kei-Ichi Okazaki, Kazuhiro Aoki
Molecular Design of FRET Probes Based on Domain Rearrangement of Protein Disulfide Isomerase for Monitoring Intracellular Redox Status. International journal of molecular sciences 24 (16) (2023)
Takahiro Nakama, Anouk Rossen, Risa Ebihara, Maho Yagi-Utsumi, Daishi Fujita, Koichi Kato, Sota Sato, Makoto Fujita
Hysteresis behavior in the unfolding/refolding processes of a protein trapped in metallo-cages. Chemical science 14 (11) (2023)
Saeko Yanaka, Maho Yagi-Utsumi, Koichi Kato, Kunihiro Kuwajima
The B domain of protein A retains residual structures in 6 M guanidinium chloride as revealed by hydrogen/deuterium-exchange NMR spectroscopy. Protein science : a publication of the Protein Society 32 (3) (2023)
Carol Cho, Christian Ganser, Takayuki Uchihashi, Koichi Kato, Ji-Joon Song
Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication. Communications biology 6 (1) (2023)
Takahiro Nakama, Anouk Rossen, Risa Ebihara, Maho Yagi-Utsumi, Daishi Fujita, Koichi Kato, Sota Sato, Makoto Fujita
Hysteresis behavior in the unfolding/refolding processes of a protein trapped in metallo-cages. Chemical science 14 (11) (2023)
Ryu Hashimoto, Masafumi Minoshima, Souhei Sakata, Fumihito Ono, Hirokazu Ishii, Yuki Watakabe, Tomomi Nemoto, Saeko Yanaka, Koichi Kato, Kazuya Kikuchi
Efficient visible/NIR light-driven uncaging of hydroxylated thiazole orange-based caged compounds in aqueous media. Chemical science 13 (25) (2022)
Satoru G Itoh, Maho Yagi-Utsumi, Koichi Kato, Hisashi Okumura
Key Residue for Aggregation of Amyloid-β Peptides. ACS chemical neuroscience 13 (22) (2022)
Saeko Yanaka, Shigetaka Nishiguchi, Rina Yogo, Hiroki Watanabe, Jiana Shen, Hirokazu Yagi, Takayuki Uchihashi, Koichi Kato
Quantitative Visualization of the Interaction between Complement Component C1 and Immunoglobulin G: The Effect of C H 1 Domain Deletion. International journal of molecular sciences 23 (4) (2022)
Fumiko Umezawa, Makoto Natsume, Shigeki Fukusada, Kazuki Nakajima, Fumiya Yamasaki, Hiroto Kawashima, Chu-Wei Kuo, Kai-Hooi Khoo, Takaya Shimura, Hirokazu Yagi, Koichi Kato
Cancer Malignancy Is Correlated with Upregulation of PCYT2-Mediated Glycerol Phosphate Modification of α-Dystroglycan. International journal of molecular sciences 23 (12) (2022)
Maho Yagi-Utsumi, Koichi Kato
Conformational Variability of Amyloid-β and the Morphological Diversity of Its Aggregates. Molecules (Basel, Switzerland) 27 (15) (2022)
Yuki Yamaguchi, Natsumi Wakaizumi, Mine Irisa, Takahiro Maruno, Mari Shimada, Koya Shintani, Haruka Nishiumi, Rina Yogo, Saeko Yanaka, Daisuke Higo, Tetsuo Torisu, Koichi Kato, Susumu Uchiyama
The Fab portion of immunoglobulin G has sites in the CL domain that interact with Fc gamma receptor IIIa. mAbs 14 (1) (2022)
Taiki Saito, Hirokazu Yagi, Chu-Wei Kuo, Kai-Hooi Khoo, Koichi Kato
An embeddable molecular code for Lewis X modification through interaction with fucosyltransferase 9. Communications biology 5 (1) (2022)
Hirokazu Yagi, Eijiro Amagasa, Masaaki Shiota, Issaku Yamada, Kiyoko F Aoki-Kinoshita, Koichi Kato
GALAXY ver3: updated web application for glycosylation profiling based on 3D HPLC map. Glycobiology 32 (8) (2022)
Siriluk Ratanabunyong, Supaphorn Seetaha, Supa Hannongbua, Saeko Yanaka, Maho Yagi-Utsumi, Koichi Kato, Atchara Paemanee, Kiattawee Choowongkomon
Biophysical Characterization of Novel DNA Aptamers against K103N/Y181C Double Mutant HIV-1 Reverse Transcriptase. Molecules (Basel, Switzerland) 27 (1) (2022)
Yasuhiro Yunoki, Atsushi Matsumoto, Ken Morishima, Anne Martel, Lionel Porcar, Nobuhiro Sato, Rina Yogo, Taiki Tominaga, Rintaro Inoue, Maho Yagi-Utsumi, Aya Okuda, Masahiro Shimizu, Reiko Urade, Kazuki Terauchi, Hidetoshi Kono, Hirokazu Yagi, Koichi Kato, Masaaki Sugiyama
Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. Communications biology 5 (1) (2022)
Kunihiro Kuwajima, Maho Yagi-Utsumi, Saeko Yanaka, Koichi Kato
DMSO-Quenched H/D-Exchange 2D NMR Spectroscopy and Its Applications in Protein Science. Molecules (Basel, Switzerland) 27 (12) (2022)
Koichi Kato, Takumi Yamaguchi, Maho Yagi-Utsumi
Experimental and computational characterization of dynamic biomolecular interaction systems involving glycolipid glycans. Glycoconjugate journal 39 (2) (2022)
Saeko Yanaka, Hirokazu Yagi, Rina Yogo, Masayoshi Onitsuka, Koichi Kato
Glutamine-free mammalian expression of recombinant glycoproteins with uniform isotope labeling: an application for NMR analysis of pharmaceutically relevant Fc glycoforms of human immunoglobulin G1. Journal of biomolecular NMR 76 (1-2) (2022)
Saeko Yanaka, Yoshiki Yamaguchi, Takeshi Takizawa, Yohei Miyanoiri, Rina Yogo, Ichio Shimada, Koichi Kato
NMR assignments of the N-glycans of the Fc fragment of mouse immunoglobulin G2b glycoprotein. Biomolecular NMR assignments 15 (1) (2021)
Ginto George, Satoshi Ninagawa, Hirokazu Yagi, Jun-Ichi Furukawa, Noritaka Hashii, Akiko Ishii-Watabe, Ying Deng, Kazutoshi Matsushita, Tokiro Ishikawa, Yugoviandi P Mamahit, Yuta Maki, Yasuhiro Kajihara, Koichi Kato, Tetsuya Okada, Kazutoshi Mori
Purified EDEM3 or EDEM1 alone produces determinant oligosaccharide structures from M8B in mammalian glycoprotein ERAD. eLife 10 (2021)
Ryo Ohtani, Yuka Anegawa, Hikaru Watanabe, Yutaro Tajima, Masanao Kinoshita, Nobuaki Matsumori, Kenichi Kawano, Saeko Yanaka, Koichi Kato, Masaaki Nakamura, Masaaki Ohba, Shinya Hayami
Metal Complex Lipids for Fluid-Fluid Phase Separation in Coassembled Phospholipid Membranes. Angewandte Chemie (International ed. in English) 60 (24) (2021)
Nobuhiro Sato, Rina Yogo, Saeko Yanaka, Anne Martel, Lionel Porcar, Ken Morishima, Rintaro Inoue, Taiki Tominaga, Takao Arimori, Junichi Takagi, Masaaki Sugiyama, Koichi Kato
A feasibility study of inverse contrast-matching small-angle neutron scattering method combined with size exclusion chromatography using antibody interactions as model systems. Journal of biochemistry 169 (6) (2021)
Chihong Song, Tadashi Satoh, Taichiro Sekiguchi, Koichi Kato, Kazuyoshi Murata
Structural Fluctuations of the Human Proteasome α7 Homo-Tetradecamer Double Ring Imply the Proteasomal α-Ring Assembly Mechanism. International journal of molecular sciences 22 (9) (2021)
Kazuhisa Miyazawa, Satoru G Itoh, Hiroki Watanabe, Takayuki Uchihashi, Saeko Yanaka, Maho Yagi-Utsumi, Koichi Kato, Kazuharu Arakawa, Hisashi Okumura
Tardigrade Secretory-Abundant Heat-Soluble Protein Has a Flexible β-Barrel Structure in Solution and Keeps This Structure in Dehydration. The journal of physical chemistry. B 125 (32) (2021)
Maho Yagi-Utsumi, Tomohiro Tanaka, Yoko Otsubo, Akira Yamashita, Shinji Yoshimura, Motohiro Nishida, Koichi Kato
Cold Atmospheric Plasma Modification of Amyloid β. International journal of molecular sciences 22 (6) (2021)
Ginto George, Satoshi Ninagawa, Hirokazu Yagi, Taiki Saito, Tokiro Ishikawa, Tetsushi Sakuma, Takashi Yamamoto, Koshi Imami, Yasushi Ishihama, Koichi Kato, Tetsuya Okada, Kazutoshi Mori
EDEM2 stably disulfide-bonded to TXNDC11 catalyzes the first mannose trimming step in mammalian glycoprotein ERAD. eLife 9 (2020)
Hirokazu Yagi, Maho Yagi-Utsumi, Rena Honda, Yusaku Ohta, Taiki Saito, Miho Nishio, Satoshi Ninagawa, Kousuke Suzuki, Takahiro Anzai, Yukiko Kamiya, Kazuhiro Aoki, Mahito Nakanishi, Tadashi Satoh, Koichi Kato
Improved secretion of glycoproteins using an N-glycan-restricted passport sequence tag recognized by cargo receptor. Nature communications 11 (1) (2020)
Methanee Hiranyakorn, Saeko Yanaka, Tadashi Satoh, Thunchanok Wilasri, Benchawan Jityuti, Maho Yagi-Utsumi, Koichi Kato
NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains. International journal of molecular sciences 21 (15) (2020)
Maho Yagi-Utsumi, Arunima Sikdar, Chihong Song, Jimin Park, Rintaro Inoue, Hiroki Watanabe, Raymond N Burton-Smith, Toshiya Kozai, Tatsuya Suzuki, Atsuji Kodama, Kentaro Ishii, Hirokazu Yagi, Tadashi Satoh, Susumu Uchiyama, Takayuki Uchihashi, Keehyoung Joo, Jooyoung Lee, Masaaki Sugiyama, Kazuyoshi Murata, Koichi Kato
Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation. Scientific reports 10 (1) (2020)
Ken Morishima, Aya Okuda, Rintaro Inoue, Nobuhiro Sato, Yosuke Miyamoto, Reiko Urade, Maho Yagi-Utsumi, Koichi Kato, Rina Hirano, Tomoya Kujirai, Hitoshi Kurumizaka, Masaaki Sugiyama
Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering. Communications biology 3 (1) (2020)
Yukiko Kamiya, Tadashi Satoh, Atsuji Kodama, Tatsuya Suzuki, Keiji Murayama, Hiromu Kashida, Susumu Uchiyama, Koichi Kato, Hiroyuki Asanuma
Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA. Communications chemistry 3 (1) (2020)
Maho Yagi-Utsumi, Saeko Yanaka, Chihong Song, Tadashi Satoh, Chiaki Yamazaki, Haruo Kasahara, Toru Shimazu, Kazuyoshi Murata, Koichi Kato
Characterization of amyloid β fibril formation under microgravity conditions. NPJ microgravity 6 (2020)
Saeko Yanaka, Rina Yogo, Koichi Kato
Biophysical characterization of dynamic structures of immunoglobulin G. Biophysical reviews 12 (3) (2020)
Tadashi Satoh, Miho Nishio, Kousuke Suzuki, Maho Yagi-Utsumi, Yukiko Kamiya, Tsunehiro Mizushima, Koichi Kato
Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport. Acta crystallographica. Section F, Structural biology communications 76 (Pt 5) (2020)
Yukiko Kamiya, Tadashi Satoh, Atsuji Kodama, Tatsuya Suzuki, Keiji Murayama, Hiromu Kashida, Susumu Uchiyama, Koichi Kato, Hiroyuki Asanuma
Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA. Communications chemistry 3 (1) (2020)
Ryo Ohtani, Kenichi Kawano, Masanao Kinoshita, Saeko Yanaka, Hikaru Watanabe, Kenji Hirai, Shiroh Futaki, Nobuaki Matsumori, Hiroshi Uji-I, Masaaki Ohba, Koichi Kato, Shinya Hayami
Pseudo-Membrane Jackets: Two-Dimensional Coordination Polymers Achieving Visible Phase Separation in Cell Membrane. Angewandte Chemie (International ed. in English) 59 (41) (2020)
Hirokazu Yagi, Saeko Yanaka, Rina Yogo, Akari Ikeda, Masayoshi Onitsuka, Toshio Yamazaki, Tatsuya Kato, Enoch Y Park, Jun Yokoyama, Koichi Kato
Silkworm Pupae Function as Efficient Producers of Recombinant Glycoproteins with Stable-Isotope Labeling. Biomolecules 10 (11) (2020)
Carol Cho, Juwon Jang, Yujin Kang, Hiroki Watanabe, Takayuki Uchihashi, Seung Joong Kim, Koichi Kato, Ja Yil Lee, Ji-Joon Song
Structural basis of nucleosome assembly by the Abo1 AAA+ ATPase histone chaperone. Nature communications 10 (1) (2019)
Yasuhiro Yunoki, Kentaro Ishii, Maho Yagi-Utsumi, Reiko Murakami, Susumu Uchiyama, Hirokazu Yagi, Koichi Kato
ATP hydrolysis by KaiC promotes its KaiA binding in the cyanobacterial circadian clock system. Life science alliance 2 (3) (2019)
Rina Yogo, Yuki Yamaguchi, Hiroki Watanabe, Hirokazu Yagi, Tadashi Satoh, Mahito Nakanishi, Masayoshi Onitsuka, Takeshi Omasa, Mari Shimada, Takahiro Maruno, Tetsuo Torisu, Shio Watanabe, Daisuke Higo, Takayuki Uchihashi, Saeko Yanaka, Susumu Uchiyama, Koichi Kato
The Fab portion of immunoglobulin G contributes to its binding to Fcγ receptor III. Scientific reports 9 (1) (2019)
Saeko Yanaka, Rina Yogo, Hiroki Watanabe, Yuki Taniguchi, Tadashi Satoh, Naoko Komura, Hiromune Ando, Hirokazu Yagi, Nobuhiro Yuki, Takayuki Uchihashi, Koichi Kato
On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q. International journal of molecular sciences 21 (1) (2019)
Rintaro Inoue, Tatsuo Nakagawa, Ken Morishima, Nobuhiro Sato, Aya Okuda, Reiko Urade, Rina Yogo, Saeko Yanaka, Maho Yagi-Utsumi, Koichi Kato, Kazuki Omoto, Kazuki Ito, Masaaki Sugiyama
Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS). Scientific reports 9 (1) (2019)
Taichiro Sekiguchi, Tadashi Satoh, Eiji Kurimoto, Chihong Song, Toshiya Kozai, Hiroki Watanabe, Kentaro Ishii, Hirokazu Yagi, Saeko Yanaka, Susumu Uchiyama, Takayuki Uchihashi, Kazuyoshi Murata, Koichi Kato
Mutational and Combinatorial Control of Self-Assembling and Disassembling of Human Proteasome α Subunits. International journal of molecular sciences 20 (9) (2019)
Tatsuya Suzuki, Saeko Yanaka, Tokio Watanabe, Gengwei Yan, Tadashi Satoh, Hirokazu Yagi, Takumi Yamaguchi, Koichi Kato
Remodeling of the Oligosaccharide Conformational Space in the Prebound State To Improve Lectin-Binding Affinity. Biochemistry 59 (34) (2019)
Tadashi Satoh, Maho Yagi-Utsumi, Kenta Okamoto, Eiji Kurimoto, Keiji Tanaka, Koichi Kato
Molecular and Structural Basis of the Proteasome α Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer. International journal of molecular sciences 20 (9) (2019)
Reiko Murakami, Yasuhiro Yunoki, Kentaro Ishii, Kazuki Terauchi, Susumu Uchiyama, Hirokazu Yagi, Koichi Kato
Cooperative Binding of KaiB to the KaiC Hexamer Ensures Accurate Circadian Clock Oscillation in Cyanobacteria. International journal of molecular sciences 20 (18) (2019)
Saeko Yanaka, Rina Yogo, Rintaro Inoue, Masaaki Sugiyama, Satoru G Itoh, Hisashi Okumura, Yohei Miyanoiri, Hirokazu Yagi, Tadashi Satoh, Takumi Yamaguchi, Koichi Kato
Dynamic Views of the Fc Region of Immunoglobulin G Provided by Experimental and Computational Observations. Antibodies (Basel, Switzerland) 8 (3) (2019)

Koichi Kato.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Koichi Kato