Yuki Sudo

Researcher Name Resolver ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Topics

Escherichia Coli

Magnetic Resonance

Diabetic Retinopathy

Top Venues

The journal of physical chemistry. B

Nature communications

Journal of the American Chemical Society

This page only lists publications with an associated author ORCID identifier.

Publications

Atsushi Shibukawa, Ryota Higuchi, Gookho Song, Hideharu Mikami, Yuki Sudo, Mooseok Jang
Large-volume focus control at 10 MHz refresh rate via fast line-scanning amplitude-encoded scattering-assisted holography. Nature communications 15 (1) (2024)
Taiki Nakamura, Yuka Shinozaki, Akihiro Otomo, Taito Urui, Misao Mizuno, Rei Abe-Yoshizumi, Manami Hashimoto, Keiichi Kojima, Yuki Sudo, Hideki Kandori, Yasuhisa Mizutani
Unusual Vibrational Coupling of the Schiff Base in the Retinal Chromophore of Sodium Ion-Pumping Rhodopsins. The journal of physical chemistry. B 128 (32) (2024)
Kotaro Nakanishi, Keiichi Kojima, Yoshiyuki Sowa, Yuki Sudo
Bidirectional Optical Control of Proton Motive Force in Escherichia coli Using Microbial Rhodopsins. The journal of physical chemistry. B 128 (27) (2024)
Atsushi Shibukawa, Ryota Higuchi, Gookho Song, Hideharu Mikami, Yuki Sudo, Mooseok Jang
Large-volume focus control at 10 MHz refresh rate via fast line-scanning amplitude-encoded scattering-assisted holography. Nature communications 15 (1) (2024)
Atsushi Shibukawa, Ryota Higuchi, Gookho Song, Hideharu Mikami, Yuki Sudo, Mooseok Jang
Large-volume focus control at 10 MHz refresh rate via fast line-scanning amplitude-encoded scattering-assisted holography. Nature communications 15 (1) (2024)
Kotaro Nakanishi, Keiichi Kojima, Yoshiyuki Sowa, Yuki Sudo
Bidirectional Optical Control of Proton Motive Force in Escherichia coli Using Microbial Rhodopsins. The journal of physical chemistry. B (2024)
Taiki Nakamura, Yuka Shinozaki, Akihiro Otomo, Taito Urui, Misao Mizuno, Rei Abe-Yoshizumi, Manami Hashimoto, Keiichi Kojima, Yuki Sudo, Hideki Kandori, Yasuhisa Mizutani
Unusual Vibrational Coupling of the Schiff Base in the Retinal Chromophore of Sodium Ion-Pumping Rhodopsins. The journal of physical chemistry. B (2024)
Titouan Jaunet-Lahary, Tatsuro Shimamura, Masahiro Hayashi, Norimichi Nomura, Kouta Hirasawa, Tetsuya Shimizu, Masao Yamashita, Naotaka Tsutsumi, Yuta Suehiro, Keiichi Kojima, Yuki Sudo, Takashi Tamura, Hiroko Iwanari, Takao Hamakubo, So Iwata, Kei-Ichi Okazaki, Teruhisa Hirai, Atsuko Yamashita
Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nature communications 14 (1) (2023)
Shiho Kawanishi, Keiichi Kojima, Atsushi Shibukawa, Masayuki Sakamoto, Yuki Sudo
Detection of Membrane Potential-Dependent Rhodopsin Fluorescence Using Low-Intensity Light Emitting Diode for Long-Term Imaging. ACS omega 8 (5) (2023)
Taichi Tsuneishi, Keiichi Kojima, Fumika Kubota, Hideyoshi Harashima, Yuma Yamada, Yuki Sudo
Development of light-induced disruptive liposomes (LiDL) as a photoswitchable carrier for intracellular substance delivery. Chemical communications (Cambridge, England) (2023)
Rika Suzuki, Toshio Nagashima, Keiichi Kojima, Reika Hironishi, Masafumi Hirohata, Tetsuya Ueta, Takeshi Murata, Toshio Yamazaki, Yuki Sudo, Hideo Takahashi
Nuclear Magnetic Resonance Detection of Hydrogen Bond Network in a Proton Pump Rhodopsin RxR and Its Alteration during the Cyclic Photoreaction. Journal of the American Chemical Society (2023)
Shiho Kawanishi, Keiichi Kojima, Atsushi Shibukawa, Masayuki Sakamoto, Yuki Sudo
Detection of Membrane Potential-Dependent Rhodopsin Fluorescence Using Low-Intensity Light Emitting Diode for Long-Term Imaging. ACS omega 8 (5) (2023)
Keiichi Kojima, Yuki Sudo
Convergent evolution of animal and microbial rhodopsins. RSC advances 13 (8) (2023)
Keiichi Kojima, Yuki Sudo
Convergent evolution of animal and microbial rhodopsins. RSC advances 13 (8) (2023)
Keiichi Kojima, Yuki Sudo
Convergent evolution of animal and microbial rhodopsins. RSC advances 13 (8) (2023)
Titouan Jaunet-Lahary, Tatsuro Shimamura, Masahiro Hayashi, Norimichi Nomura, Kouta Hirasawa, Tetsuya Shimizu, Masao Yamashita, Naotaka Tsutsumi, Yuta Suehiro, Keiichi Kojima, Yuki Sudo, Takashi Tamura, Hiroko Iwanari, Takao Hamakubo, So Iwata, Kei-Ichi Okazaki, Teruhisa Hirai, Atsuko Yamashita
Author Correction: Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nature communications 14 (1) (2023)
Shin Nakao, Keiichi Kojima, Yuki Sudo
Phototriggered Apoptotic Cell Death (PTA) Using the Light-Driven Outward Proton Pump Rhodopsin Archaerhodopsin-3. Journal of the American Chemical Society 144 (9) (2022)
Satoshi Yasuda, Tomoki Akiyama, Keiichi Kojima, Tetsuya Ueta, Tomohiko Hayashi, Satoshi Ogasawara, Satoru Nagatoishi, Kouhei Tsumoto, Naoki Kunishima, Yuki Sudo, Masahiro Kinoshita, Takeshi Murata
Development of an Outward Proton Pumping Rhodopsin with a New Record in Thermostability by Means of Amino Acid Mutations. The journal of physical chemistry. B 126 (5) (2022)
Masahiro Hayashi, Keiichi Kojima, Yuki Sudo, Atsuko Yamashita
An optogenetic assay method for electrogenic transporters using Escherichia coli co-expressing light-driven proton pump. Protein science : a publication of the Protein Society 30 (10) (2021)
Masaki Tsujimura, Keiichi Kojima, Shiho Kawanishi, Yuki Sudo, Hiroshi Ishikita
Proton transfer pathway in anion channelrhodopsin-1. eLife 10 (2021)
Keiichi Kojima, Rika Kurihara, Masayuki Sakamoto, Tsukasa Takanashi, Hikaru Kuramochi, Xiao Min Zhang, Haruhiko Bito, Tahei Tahara, Yuki Sudo
Comparative Studies of the Fluorescence Properties of Microbial Rhodopsins: Spontaneous Emission Versus Photointermediate Fluorescence. The journal of physical chemistry. B 124 (34) (2020)
Satoshi Yasuda, Tomoki Akiyama, Sayaka Nemoto, Tomohiko Hayashi, Tetsuya Ueta, Keiichi Kojima, Takashi Tsukamoto, Satoru Nagatoishi, Kouhei Tsumoto, Yuki Sudo, Masahiro Kinoshita, Takeshi Murata
Methodology for Further Thermostabilization of an Intrinsically Thermostable Membrane Protein Using Amino Acid Mutations with Its Original Function Being Retained. Journal of chemical information and modeling 60 (3) (2020)
Tomohiko Hayashi, Satoshi Yasuda, Kano Suzuki, Tomoki Akiyama, Kanae Kanehara, Keiichi Kojima, Mikio Tanabe, Ryuichi Kato, Toshiya Senda, Yuki Sudo, Takeshi Murata, Masahiro Kinoshita
How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained? The journal of physical chemistry. B 124 (6) (2020)
Keiichi Kojima, Natsuki Miyoshi, Atsushi Shibukawa, Srikanta Chowdhury, Masaki Tsujimura, Tomoyasu Noji, Hiroshi Ishikita, Akihiro Yamanaka, Yuki Sudo
Green-Sensitive, Long-Lived, Step-Functional Anion Channelrhodopsin-2 Variant as a High-Potential Neural Silencing Tool. The journal of physical chemistry letters 11 (15) (2020)
Tomohiko Hayashi, Satoshi Yasuda, Kano Suzuki, Tomoki Akiyama, Kanae Kanehara, Keiichi Kojima, Mikio Tanabe, Ryuichi Kato, Toshiya Senda, Yuki Sudo, Takeshi Murata, Masahiro Kinoshita
Correction to "How Does a Microbial Rodhopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?" The journal of physical chemistry. B 124 (14) (2020)
Keiichi Kojima, Atsushi Shibukawa, Yuki Sudo
The Unlimited Potential of Microbial Rhodopsins as Optical Tools. Biochemistry 59 (3) (2019)
David M Needham, Susumu Yoshizawa, Toshiaki Hosaka, Camille Poirier, Chang Jae Choi, Elisabeth Hehenberger, Nicholas A T Irwin, Susanne Wilken, Cheuk-Man Yung, Charles Bachy, Rika Kurihara, Yu Nakajima, Keiichi Kojima, Tomomi Kimura-Someya, Guy Leonard, Rex R Malmstrom, Daniel R Mende, Daniel K Olson, Yuki Sudo, Sebastian Sudek, Thomas A Richards, Edward F DeLong, Patrick J Keeling, Alyson E Santoro, Mikako Shirouzu, Wataru Iwasaki, Alexandra Z Worden
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proceedings of the National Academy of Sciences of the United States of America 116 (41) (2019)
Atsushi Shibukawa, Keiichi Kojima, Yu Nakajima, Yosuke Nishimura, Susumu Yoshizawa, Yuki Sudo
Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium Bellilinea caldifistulae (BcHeR) and Comparison with Heliorhodopsin-48C12. Biochemistry 58 (26) (2019)
Riho Takayama, Akimasa Kaneko, Takashi Okitsu, Satoshi P Tsunoda, Kazumi Shimono, Misao Mizuno, Keiichi Kojima, Takashi Tsukamoto, Hideki Kandori, Yasuhisa Mizutani, Akimori Wada, Yuki Sudo
Production of a Light-Gated Proton Channel by Replacing the Retinal Chromophore with Its Synthetic Vinylene Derivative. The journal of physical chemistry letters 9 (11) (2018)
Ramprasad Misra, Tamar Eliash, Yuki Sudo, Mordechai Sheves
Retinal-Salinixanthin Interactions in a Thermophilic Rhodopsin. The journal of physical chemistry. B 123 (1) (2018)
Tomomi Shionoya, Misao Mizuno, Takashi Tsukamoto, Kento Ikeda, Hayato Seki, Keiichi Kojima, Mikihiro Shibata, Izuru Kawamura, Yuki Sudo, Yasuhisa Mizutani
Correction to "High Thermal Stability of Oligomeric Assemblies of Thermophilic Rhodopsin in a Lipid Environment". The journal of physical chemistry. B 122 (42) (2018)
Tomomi Shionoya, Misao Mizuno, Takashi Tsukamoto, Kento Ikeda, Hayato Seki, Keiichi Kojima, Mikihiro Shibata, Izuru Kawamura, Yuki Sudo, Yasuhisa Mizutani
High Thermal Stability of Oligomeric Assemblies of Thermophilic Rhodopsin in a Lipid Environment. The journal of physical chemistry. B 122 (27) (2018)
Akiko Niho, Susumu Yoshizawa, Takashi Tsukamoto, Marie Kurihara, Shinya Tahara, Yu Nakajima, Misao Mizuno, Hikaru Kuramochi, Takuhiro Otosu, Yasuhisa Mizutani, Yuki Sudo
Demonstration of a Light-Driven SO42- Transporter and Its Spectroscopic Characteristics. Journal of the American Chemical Society 139 (12) (2017)
Takashi Tsukamoto, Susumu Yoshizawa, Takashi Kikukawa, Makoto Demura, Yuki Sudo
Implications for the Light-Driven Chloride Ion Transport Mechanism of Nonlabens marinus Rhodopsin 3 by Its Photochemical Characteristics. The journal of physical chemistry. B 121 (9) (2017)
Toshiki Nishimura, Fuyuko Tamura, Sawako Kobayashi, Yasushi Tanimoto, Fumio Hayashi, Yuki Sudo, Yasuhiko Iwasaki, Kenichi Morigaki
Hybrid Model Membrane Combining Micropatterned Lipid Bilayer and Hydrophilic Polymer Brush. Langmuir : the ACS journal of surfaces and colloids 33 (23) (2017)
Akimasa Kaneko, Keiichi Inoue, Keiichi Kojima, Hideki Kandori, Yuki Sudo
Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering. Biophysical reviews 9 (6) (2017)