Kun Qu

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 24

Top Venues

Science advances

Nature communications

Briefings in bioinformatics

Cell discovery

University of Science and Technology of China

Indiana University Bloomington (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Science and Technology of China Jun 01 2016

China

Professor :: School of Life Science

Stanford University Jun 01 2010 - May 31 2016

United States

Director of Bioinformatics :: Dermatology

Education History

Indiana University Bloomington Jul 01 2004 - Feb 28 2010

United States

PHD :: Chemistry

University of Science and Technology of China Sep 01 1999 - Jun 30 2004

China

BSC :: Chemical Physics

Publications

Minghao Fang, Jingwen Fang, Songwen Luo, Ke Liu, Qiaoni Yu, Jiaxuan Yang, Youyang Zhou, Zongkai Li, Ruoming Sun, Chuang Guo, Kun Qu
eccDNA-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular DNA from high-throughput sequencing data. Briefings in bioinformatics 25 (2) (2024)
Minghao Fang, Jingwen Fang, Songwen Luo, Ke Liu, Qiaoni Yu, Jiaxuan Yang, Youyang Zhou, Zongkai Li, Ruoming Sun, Chuang Guo, Kun Qu
eccDNA-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular DNA from high-throughput sequencing data. Briefings in bioinformatics 25 (2) (2024)
Hao Xu, Shuyan Wang, Minghao Fang, Songwen Luo, Chunpeng Chen, Siyuan Wan, Rirui Wang, Meifang Tang, Tian Xue, Bin Li, Jun Lin, Kun Qu
SPACEL: deep learning-based characterization of spatial transcriptome architectures. Nature communications 14 (1) (2023)
Qiaoni Yu, Xu Liu, Jingwen Fang, Huihui Wu, Chuang Guo, Wen Zhang, Nianping Liu, Chen Jiang, Qing Sha, Xiao Yuan, Zhikai Wang, Kun Qu
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. Science advances 9 (4) (2023)
Qiaoni Yu, Xu Liu, Jingwen Fang, Huihui Wu, Chuang Guo, Wen Zhang, Nianping Liu, Chen Jiang, Qing Sha, Xiao Yuan, Zhikai Wang, Kun Qu
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. Science advances 9 (4) (2023)
Jun Lin, Liang Dong, Yi-Ming Liu, Yi Hu, Chen Jiang, Ke Liu, Liu Liu, Yong-Hong Song, Mei Sun, Xing-Cheng Xiang, Kun Qu, Yang Lu, Long-Ping Wen, Shu-Hong Yu
Nickle-cobalt alloy nanocrystals inhibit activation of inflammasomes. National science review 10 (8) (2023)
Miaoran Xia, Bingbing Wang, Wujianan Sun, Dengyu Ji, Hang Zhou, Xuefeng Huang, Minghang Yu, Ziyang Su, Ping Chen, Kun Qu, Xi Wang
Lsd1 safeguards T-cell development via suppressing endogenous retroelements and interferon responses. Life science alliance 6 (10) (2023)
Qiaoni Yu, Xu Liu, Jingwen Fang, Huihui Wu, Chuang Guo, Wen Zhang, Nianping Liu, Chen Jiang, Qing Sha, Xiao Yuan, Zhikai Wang, Kun Qu
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. Science advances 9 (4) (2023)
Min Wei, Yanping Sun, Shouzhen Li, Yunuo Chen, Longfei Li, Minghao Fang, Ronghua Shi, Dali Tong, Jutao Chen, Yuqian Ma, Kun Qu, Mei Zhang, Tian Xue
Single-cell profiling reveals Müller glia coordinate retinal intercellular communication during light/dark adaptation via thyroid hormone signaling. Protein & cell (2023)
Nianping Liu, Chen Jiang, Xinfeng Yao, Minghao Fang, Xiaolong Qiao, Lin Zhu, Zongcheng Yang, Xuyuan Gao, Ying Ji, Chaoshi Niu, Chuandong Cheng, Kun Qu, Jun Lin
Single-cell landscape of primary central nervous system diffuse large B-cell lymphoma. Cell discovery 9 (1) (2023)
Qiaoni Yu, Xu Liu, Jingwen Fang, Huihui Wu, Chuang Guo, Wen Zhang, Nianping Liu, Chen Jiang, Qing Sha, Xiao Yuan, Zhikai Wang, Kun Qu
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. Science advances 9 (4) (2023)
Zhuoqiao Shen, Minghao Fang, Wujianan Sun, Meifang Tang, Nianping Liu, Lin Zhu, Qian Liu, Bin Li, Ruoming Sun, Yu Shi, Chuang Guo, Jun Lin, Kun Qu
A transcriptome atlas and interactive analysis platform for autoimmune disease. Database : the journal of biological databases and curation 2022 (2022)
Yawen Chen, Xianwei Wang, Xiaolei Hao, Bin Li, Wanyin Tao, Shu Zhu, Kun Qu, Haiming Wei, Rui Sun, Hui Peng, Zhigang Tian
Ly49E separates liver ILC1s into embryo-derived and postnatal subsets with different functions. The Journal of experimental medicine 219 (5) (2022)
Chuang Guo, Pengfei Cai, Liying Jin, Qing Sha, Qiaoni Yu, Wen Zhang, Chen Jiang, Qian Liu, Dandan Zong, Kun Li, Jingwen Fang, Fangting Lu, Yanshi Wang, Daojing Li, Jun Lin, Lu Li, Zhutian Zeng, Xianhong Tong, Haiming Wei, Kun Qu
Single-cell profiling of the human decidual immune microenvironment in patients with recurrent pregnancy loss. Cell discovery 7 (1) (2021)
Young Li, Kun Li, Lianbang Zhu, Bin Li, Dandan Zong, Pengfei Cai, Chen Jiang, Pengcheng Du, Jun Lin, Kun Qu
Development of double-positive thymocytes at single-cell resolution. Genome medicine 13 (1) (2021)
Ren-Dong Hu, Wen Zhang, Liang Li, Zu-Qi Zuo, Min Ma, Jin-Fen Ma, Ting-Ting Yin, Cai-Yue Gao, Shu-Han Yang, Zhi-Bin Zhao, Zi-Jun Li, Gui-Bin Qiao, Zhe-Xiong Lian, Kun Qu
Chromatin accessibility analysis identifies the transcription factor ETV5 as a suppressor of adipose tissue macrophage activation in obesity. Cell death & disease 12 (11) (2021)
Dandan Zong, Beibei Huang, Young Li, Yichen Lu, Nan Xiang, Chuang Guo, Qian Liu, Qing Sha, Pengcheng Du, Qiaoni Yu, Wen Zhang, Pengfei Cai, Yanping Sun, Jinhui Tao, Xiaomei Li, Shanbao Cai, Kun Qu
Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis. BMC biology 19 (1) (2021)
Bin Li, Young Li, Kun Li, Lianbang Zhu, Qiaoni Yu, Pengfei Cai, Jingwen Fang, Wen Zhang, Pengcheng Du, Chen Jiang, Jun Lin, Kun Qu
APEC: an accesson-based method for single-cell chromatin accessibility analysis. Genome biology 21 (1) (2020)
Qian Liu, Lisa C Zaba, Ansuman T Satpathy, Michelle Longmire, Wen Zhang, Kun Li, Jeffrey Granja, Chuang Guo, Jun Lin, Rui Li, Karen Tolentino, Gabriela Kania, Oliver Distler, David Fiorentino, Lorinda Chung, Kun Qu, Howard Y Chang
Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis. Nature communications 11 (1) (2020)
Shi-Ting Li, De Huang, Shengqi Shen, Yongping Cai, Songge Xing, Gongwei Wu, Zetan Jiang, Yijie Hao, Mengqiu Yuan, Nana Wang, Lianbang Zhu, Ronghui Yan, Dongdong Yang, Lin Wang, Zhaoji Liu, Xin Hu, Rongbin Zhou, Kun Qu, Ailing Li, Xiaotao Duan, Huafeng Zhang, Ping Gao
Myc-mediated SDHA acetylation triggers epigenetic regulation of gene expression and tumorigenesis. Nature metabolism 2 (3) (2020)
Qian Liu, Lisa C Zaba, Ansuman T Satpathy, Michelle Longmire, Wen Zhang, Kun Li, Jeffrey Granja, Chuang Guo, Jun Lin, Rui Li, Karen Tolentino, Gabriela Kania, Oliver Distler, David Fiorentino, Lorinda Chung, Kun Qu, Howard Y Chang
Author Correction: Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis. Nature communications 11 (1) (2020)
Haohuan Xie, Wen Zhang, Mei Zhang, Tasneem Akhtar, Young Li, Wenyang Yi, Xiao Sun, Zuqi Zuo, Min Wei, Xin Fang, Ziqin Yao, Kai Dong, Suijuan Zhong, Qiang Liu, Yong Shen, Qian Wu, Xiaoqun Wang, Huan Zhao, Jin Bao, Kun Qu, Tian Xue
Chromatin accessibility analysis reveals regulatory dynamics of developing human retina and hiPSC-derived retinal organoids. Science advances 6 (6) (2020)
Chuang Guo, Bin Li, Huan Ma, Xiaofang Wang, Pengfei Cai, Qiaoni Yu, Lin Zhu, Liying Jin, Chen Jiang, Jingwen Fang, Qian Liu, Dandan Zong, Wen Zhang, Yichen Lu, Kun Li, Xuyuan Gao, Binqing Fu, Lianxin Liu, Xiaoling Ma, Jianping Weng, Haiming Wei, Teng-Chuan Jin, Jun Lin, Kun Qu
Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm. Nature communications 11 (1) (2020)
Pengfei Cai, Auke B C Otten, Binbin Cheng, Mitsuhiro A Ishii, Wen Zhang, Beibei Huang, Kun Qu, Bryan K Sun
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis. Genome research 30 (1) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kun Qu