Lillian T Chong (Lillian Chong, L T Chong)

Pitt ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 37

Top Venues

Journal of chemical information and modeling

bioRxiv : the preprint server for biology

Chemical science

Journal of the American Chemical Society

University of Pittsburgh

University of California San Francisco (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pittsburgh

United States

Associate Professor :: Chemistry

Education History

University of California San Francisco

United States

PHD

Massachusetts Institute of Technology

United States

BSC

Publications

Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. Journal of chemical information and modeling 64 (15) (2024)
Jeremy M G Leung, Nicolas Frazee, Alex Brace, Arvind Ramanathan, Lillian T Chong
Unsupervised learning of progress coordinates during weighted ensemble simulations: Application to millisecond protein folding. bioRxiv : the preprint server for biology (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. bioRxiv : the preprint server for biology (2024)
Anthony T Bogetti, Matthew C Zwier, Lillian T Chong
Revisiting Textbook Azide-Clock Reactions: A "Propeller-Crawling" Mechanism Explains Differences in Rates. Journal of the American Chemical Society 146 (18) (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. bioRxiv : the preprint server for biology (2024)
Anthony T Bogetti, Matthew C Zwier, Lillian T Chong
Revisiting Textbook Azide-Clock Reactions: A "Propeller-Crawling" Mechanism Explains Differences in Rates. Journal of the American Chemical Society 146 (18) (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. Journal of chemical information and modeling 64 (15) (2024)
Anthony T Bogetti, Matthew C Zwier, Lillian T Chong
Revisiting Textbook Azide-Clock Reactions: A "Propeller-Crawling" Mechanism Explains Differences in Rates. Journal of the American Chemical Society (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. Journal of chemical information and modeling (2024)
Anthony T Bogetti, Matthew C Zwier, Lillian T Chong
Revisiting Textbook Azide-Clock Reactions: A "Propeller-Crawling" Mechanism Explains Differences in Rates. Journal of the American Chemical Society 146 (18) (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. Journal of chemical information and modeling (2024)
Anthony T Bogetti, Matthew C Zwier, Lillian T Chong
Revisiting Textbook Azide-Clock Reactions: A "Propeller-Crawling" Mechanism Explains Differences in Rates. Journal of the American Chemical Society 146 (18) (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. Journal of chemical information and modeling 64 (15) (2024)
Darian T Yang, Lillian T Chong
WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data. bioRxiv : the preprint server for biology (2024)
Jacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, W Seth Horne
Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding protein. Chemical science 15 (2) (2023)
Anthony T Bogetti, Jeremy M G Leung, Lillian T Chong
LPATH: A semi-automated Python tool for clustering molecular pathways. bioRxiv : the preprint server for biology (2023)
Jacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, W Seth Horne
Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding protein. Chemical science 15 (2) (2023)
Anthony T Bogetti, Jeremy M G Leung, Lillian T Chong
LPATH: A Semiautomated Python Tool for Clustering Molecular Pathways. Journal of chemical information and modeling (2023)
Xingjian Xu, Leandro Pimentel Marcelino, Denize Cristina Favaro, Marion L Silvestrini, Riccardo Solazzo, Lillian T Chong, Kevin H Gardner
Identification of Small Molecule Ligand Binding Sites On and In the ARNT PAS-B Domain. bioRxiv : the preprint server for biology (2023)
Jacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, W Seth Horne
Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding protein. Chemical science 15 (2) (2023)
Jacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, W Seth Horne
Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding protein. Chemical science 15 (2) (2023)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
She Zhang, Jeff P Thompson, Junchao Xia, Anthony T Bogetti, Forrest York, A Geoffrey Skillman, Lillian T Chong, David N LeBard
Mechanistic Insights into Passive Membrane Permeability of Drug-like Molecules from a Weighted Ensemble of Trajectories. Journal of chemical information and modeling 62 (8) (2022)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Darian T Yang, Angela M Gronenborn, Lillian T Chong
Development and Validation of Fluorinated, Aromatic Amino Acid Parameters for Use with the AMBER ff15ipq Protein Force Field. The journal of physical chemistry. A 126 (14) (2022)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Jacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, W Seth Horne
Implications of the unfolded state in the folding energetics of heterogeneous-backbone protein mimetics. Chemical science 13 (40) (2022)
John D Russo, She Zhang, Jeremy M G Leung, Anthony T Bogetti, Jeff P Thompson, Alex J DeGrave, Paul A Torrillo, A J Pratt, Kim F Wong, Junchao Xia, Jeremy Copperman, Joshua L Adelman, Matthew C Zwier, David N LeBard, Daniel M Zuckerman, Lillian T Chong
WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications. Journal of chemical theory and computation 18 (2) (2022)
Anthony T Bogetti, Maria F Presti, Stewart N Loh, Lillian T Chong
The Next Frontier for Designing Switchable Proteins: Rational Enhancement of Kinetics. The journal of physical chemistry. B 125 (32) (2021)
Paul A Torrillo, Anthony T Bogetti, Lillian T Chong
A Minimal, Adaptive Binning Scheme for Weighted Ensemble Simulations. The journal of physical chemistry. A 125 (7) (2021)
Terra Sztain, Surl-Hee Ahn, Anthony T Bogetti, Lorenzo Casalino, Jory A Goldsmith, Evan Seitz, Ryan S McCool, Fiona L Kearns, Francisco Acosta-Reyes, Suvrajit Maji, Ghoncheh Mashayekhi, James Andrew McCammon, Abbas Ourmazd, Joachim Frank, Jason S McLellan, Lillian T Chong, Rommie Elizabeth Amaro
A glycan gate controls opening of the SARS-CoV-2 spike protein. Nature chemistry 13 (10) (2021)
Alex J DeGrave, Anthony T Bogetti, Lillian T Chong
The RED scheme: Rate-constant estimation from pre-steady state weighted ensemble simulations. The Journal of chemical physics 154 (11) (2021)
Abigail C Dommer, Lorenzo Casalino, Fiona L Kearns, Mia A Rosenfeld, Nicholas A Wauer, Surl-Hee Ahn, John D Russo, Sofia Oliveira, Clare Morris, Anthony T Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel G A Smith, Zhuoran Qiao, Sai Krishna Sirumalla, Michael O'Connor, Frederick R Manby, Anima Anandkumar, David Hardy, James Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John E Stone, Daniel M Zuckerman, Adrian Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol. bioRxiv : the preprint server for biology (2021)
Karl T Debiec, Angela M Gronenborn, Lillian T Chong
Correction to "Evaluating the Strength of Salt Bridges: A Comparison of Current Biomolecular Force Fields". The journal of physical chemistry. B 123 (19) (2019)
Ali S Saglam, Lillian T Chong
Protein-protein binding pathways and calculations of rate constants using fully-continuous, explicit-solvent simulations. Chemical science 10 (8) (2018)
A S Saglam, D W Wang, Matthew C Zwier, Lillian T Chong
Flexibility vs Preorganization: Direct Comparison of Binding Kinetics for a Disordered Peptide and Its Exact Preorganized Analogues. The journal of physical chemistry. B 121 (43) (2017)

Lillian T Chong.css-eqlu8i{font-size:small;padding-left:4px;} (Lillian Chong, L T Chong)

Publication Activity (10 Years)

Top Topics

Top Venues

Lillian T Chong (Lillian Chong, L T Chong)