Surl-Hee Ahn

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 30

Top Venues

The Journal of general physiology

Journal of chemical theory and computation

The international journal of high performance computing applications

Nature communications

University of California San Diego

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego Oct 29 2018

United States

Postdoctoral Scholar :: Chemistry and Biochemistry

Education History

Stanford University Jun 25 2012 - Sep 27 2018

United States

PHD :: Chemistry

University of Pennsylvania Sep 01 2010 - Aug 15 2012

United States

MSC :: Chemistry

Publications

Christian G Seitz, Surl-Hee Ahn, Haixin Wei, Matson Kyte, Gregory M Cook, Kurt L Krause, James Andrew McCammon
Targeting Tuberculosis: Novel Scaffolds for Inhibiting Cytochrome bd Oxidase. Journal of chemical information and modeling (2024)
Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S Mclellan, Rommie Elizabeth Amaro
Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens. Nature communications 15 (1) (2024)
Siddharth Sonti, Chenghan Sun, Zekun Chen, Robert Michael Kowalski, Joseph S Kowalski, Davide Donadio, Surl-Hee Ahn, Ambarish R Kulkarni
Stability and Dynamics of Zeolite-Confined Gold Nanoclusters. Journal of chemical theory and computation (2024)
Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S Mclellan, Rommie Elizabeth Amaro
Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens. Nature communications 15 (1) (2024)
Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S Mclellan, Rommie Elizabeth Amaro
Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens. Nature communications 15 (1) (2024)
Christian G Seitz, Surl-Hee Ahn, Haixin Wei, Matson Kyte, Gregory M Cook, Kurt L Krause, James Andrew McCammon
Targeting Tuberculosis: Novel Scaffolds for Inhibiting Cytochrome bd Oxidase. Journal of chemical information and modeling 64 (13) (2024)
Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S Mclellan, Rommie Elizabeth Amaro
Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens. Nature communications 15 (1) (2024)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Anupam Anand Ojha, Saumya Thakur, Surl-Hee Ahn, Rommie Elizabeth Amaro
DeepWEST: Deep Learning of Kinetic Models with the Weighted Ensemble Simulation Toolkit for Enhanced Sampling. Journal of chemical theory and computation 19 (4) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Anupam Anand Ojha, Saumya Thakur, Surl-Hee Ahn, Rommie Elizabeth Amaro
DeepWEST: Deep Learning of Kinetic Models with the Weighted Ensemble Simulation Toolkit for Enhanced Sampling. Journal of chemical theory and computation (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Khoa Ngo, Diego Lopez Mateos, Yanxiao Han, Kyle C Rouen, Surl-Hee Ahn, Heike Wulff, Colleen E Clancy, Vladimir Yarov-Yarovoy, Igor Vorobyov
Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel. The Journal of general physiology 156 (2) (2023)
Anupam Anand Ojha, Saumya Thakur, Surl-Hee Ahn, Rommie Elizabeth Amaro
DeepWEST: Deep Learning of Kinetic Models with the Weighted Ensemble Simulation Toolkit for Enhanced Sampling. Journal of chemical theory and computation (2023)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia A Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John D Russo, Ana Sofia F Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James C Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian T Chong, Rommie Elizabeth Amaro
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The international journal of high performance computing applications 37 (1) (2022)
Surl-Hee Ahn, Anupam Anand Ojha, Rommie Elizabeth Amaro, James Andrew McCammon
Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling. Journal of chemical theory and computation (2021)
Surl-Hee Ahn, Sanbo Qin, Jason Z Zhang, James Andrew McCammon, Jin Zhang, Huan-Xiang Zhou
Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIα liquid-liquid phase separation. The Journal of chemical physics 154 (22) (2021)
Terra Sztain, Surl-Hee Ahn, Anthony T Bogetti, Lorenzo Casalino, Jory A Goldsmith, Evan Seitz, Ryan S McCool, Fiona L Kearns, Francisco Acosta-Reyes, Suvrajit Maji, Ghoncheh Mashayekhi, James Andrew McCammon, Abbas Ourmazd, Joachim Frank, Jason S McLellan, Lillian T Chong, Rommie Elizabeth Amaro
A glycan gate controls opening of the SARS-CoV-2 spike protein. Nature chemistry 13 (10) (2021)
Surl-Hee Ahn, Benjamin R Jagger, Rommie Elizabeth Amaro
Ranking of Ligand Binding Kinetics Using a Weighted Ensemble Approach and Comparison with a Multiscale Milestoning Approach. Journal of chemical information and modeling 60 (11) (2020)
Surl-Hee Ahn, Jay W Grate
Foldamer Architectures of Triazine-Based Sequence-Defined Polymers Investigated with Molecular Dynamics Simulations and Enhanced Sampling Methods. The journal of physical chemistry. B 123 (44) (2019)
Hee Sun Lee, Surl-Hee Ahn, Eric F Darve
The multi-dimensional generalized Langevin equation for conformational motion of proteins. The Journal of chemical physics 150 (17) (2019)
Surl-Hee Ahn, Jay W Grate, Eric F Darve
Efficiently sampling conformations and pathways using the concurrent adaptive sampling (CAS) algorithm. The Journal of chemical physics 147 (7) (2018)
Surl-Hee Ahn, Jay W Grate, Eric F Darve
Investigating the role of non-covalent interactions in conformation and assembly of triazine-based sequence-defined polymers. The Journal of chemical physics 149 (7) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Surl-Hee Ahn