Lingchong You

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 55

Top Topics

Microbial Community

Antibiotic Resistance Genes

Pseudomonas Aeruginosa

Top Venues

Molecular systems biology

Nature microbiology

Nature communications

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Zongru Li, Qionghua Shen, Grace A Usher, Andrew P Anderson, Manuel Iburg, Richard Lin, Brandon Zimmer, Matthew D Meyer, Alex S Holehouse, Lingchong You, Ashutosh Chilkoti, Yifan Dai, George J Lu
Phase transition of GvpU regulates gas vesicle clustering in bacteria. Nature microbiology 9 (4) (2024)
Rohan Maddamsetti, Yi Yao, Teng Wang, Junheng Gao, Vincent T Huang, Grayson S Hamrick, Hye-In Son, Lingchong You
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria. Nature communications 15 (1) (2024)
Yuanchi Ha, Helena R Ma, Feilun Wu, Andrea Weiss, Katherine Duncker, Helen Z Xu, Jia Lu, Max Golovsky, Daniel Reker, Lingchong You
Data-driven learning of structure augments quantitative prediction of biological responses. PLoS computational biology 20 (6) (2024)
Yuanchi Ha, Helena R Ma, Feilun Wu, Andrea Weiss, Katherine Duncker, Helen Z Xu, Jia Lu, Max Golovsky, Daniel Reker, Lingchong You
Data-driven learning of structure augments quantitative prediction of biological responses. PLoS computational biology 20 (6) (2024)
Rohan Maddamsetti, Yi Yao, Teng Wang, Junheng Gao, Vincent T Huang, Grayson S Hamrick, Hye-In Son, Lingchong You
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria. Nature communications 15 (1) (2024)
Emrah Şimşek, Kyeri Kim, Jia Lu, Anita Silver, Nan Luo, Charlotte T Lee, Lingchong You
A 'rich-get-richer' mechanism drives patchy dynamics and resistance evolution in antibiotic-treated bacteria. Molecular systems biology (2024)
Nan Luo, Jia Lu, Emrah Şimşek, Anita Silver, Yi Yao, Xiaoyi Ouyang, Stuart Andrew West, Lingchong You
The collapse of cooperation during range expansion of Pseudomonas aeruginosa. Nature microbiology (2024)
Nan Luo, Jia Lu, Emrah Şimşek, Anita Silver, Yi Yao, Xiaoyi Ouyang, Stuart Andrew West, Lingchong You
The collapse of cooperation during range expansion of Pseudomonas aeruginosa. Nature microbiology (2024)
Nan Luo, Jia Lu, Emrah Şimşek, Anita Silver, Yi Yao, Xiaoyi Ouyang, Stuart Andrew West, Lingchong You
The collapse of cooperation during range expansion of Pseudomonas aeruginosa. Nature microbiology 9 (5) (2024)
Zongru Li, Qionghua Shen, Grace A Usher, Andrew P Anderson, Manuel Iburg, Richard Lin, Brandon Zimmer, Matthew D Meyer, Alex S Holehouse, Lingchong You, Ashutosh Chilkoti, Yifan Dai, George J Lu
Phase transition of GvpU regulates gas vesicle clustering in bacteria. Nature microbiology (2024)
Kyeri Kim, Andrea Weiss, Helena R Ma, Hye-In Son, Zhengqing Zhou, Lingchong You
Antibiotic-mediated microbial community restructuring is dictated by variability in antibiotic susceptibility and population interactions. bioRxiv : the preprint server for biology (2024)
Emrah Şimşek, Kyeri Kim, Jia Lu, Anita Silver, Nan Luo, Charlotte T Lee, Lingchong You
A 'rich-get-richer' mechanism drives patchy dynamics and resistance evolution in antibiotic-treated bacteria. Molecular systems biology 20 (8) (2024)
Zongru Li, Qionghua Shen, Grace A Usher, Andrew P Anderson, Manuel Iburg, Richard Lin, Brandon Zimmer, Matthew D Meyer, Alex S Holehouse, Lingchong You, Ashutosh Chilkoti, Yifan Dai, George J Lu
Phase transition of GvpU regulates gas vesicle clustering in bacteria. Nature microbiology 9 (4) (2024)
Nan Luo, Jia Lu, Emrah Şimşek, Anita Silver, Yi Yao, Xiaoyi Ouyang, Stuart Andrew West, Lingchong You
The collapse of cooperation during range expansion of Pseudomonas aeruginosa. Nature microbiology 9 (5) (2024)
Emrah Şimşek, Kyeri Kim, Jia Lu, Anita Silver, Nan Luo, Charlotte T Lee, Lingchong You
A 'rich-get-richer' mechanism drives patchy dynamics and resistance evolution in antibiotic-treated bacteria. Molecular systems biology (2024)
Nan Luo, Jia Lu, Emrah Şimşek, Anita Silver, Yi Yao, Xiaoyi Ouyang, Stuart Andrew West, Lingchong You
The collapse of cooperation during range expansion of Pseudomonas aeruginosa. Nature microbiology 9 (5) (2024)
Zongru Li, Qionghua Shen, Grace A Usher, Andrew P Anderson, Manuel Iburg, Richard Lin, Brandon Zimmer, Matthew D Meyer, Alex S Holehouse, Lingchong You, Ashutosh Chilkoti, Yifan Dai, George J Lu
Phase transition of GvpU regulates gas vesicle clustering in bacteria. Nature microbiology 9 (4) (2024)
Rohan Maddamsetti, Yi Yao, Teng Wang, Junheng Gao, Vincent T Huang, Grayson S Hamrick, Hye-In Son, Lingchong You
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria. Nature communications 15 (1) (2024)
Emrah Şimşek, Kyeri Kim, Jia Lu, Anita Silver, Nan Luo, Charlotte T Lee, Lingchong You
A 'rich-get-richer' mechanism drives patchy dynamics and resistance evolution in antibiotic-treated bacteria. Molecular systems biology 20 (8) (2024)
Yuanchi Ha, Helena R Ma, Feilun Wu, Andrea Weiss, Katherine Duncker, Helen Z Xu, Jia Lu, Max Golovsky, Daniel Reker, Lingchong You
Data-driven learning of structure augments quantitative prediction of biological responses. PLoS computational biology 20 (6) (2024)
Yuanchi Ha, Helena R Ma, Feilun Wu, Andrea Weiss, Katherine Duncker, Helen Z Xu, Jia Lu, Max Golovsky, Daniel Reker, Lingchong You
Data-driven learning of structure augments quantitative prediction of biological responses. PLoS computational biology 20 (6) (2024)
Yuanchi Ha, Helena R Ma, Feilun Wu, Andrea Weiss, Katherine Duncker, Helen Z Xu, Jia Lu, Max Golovsky, Daniel Reker, Lingchong You
Data-driven learning of structure augments quantitative prediction of biological responses. PLoS computational biology 20 (6) (2024)
Zongru Li, Qionghua Shen, Grace A Usher, Andrew P Anderson, Manuel Iburg, Richard Lin, Brandon Zimmer, Matthew D Meyer, Alex S Holehouse, Lingchong You, Ashutosh Chilkoti, Yifan Dai, George J Lu
Phase transition of GvpU regulates gas vesicle clustering in bacteria. Nature microbiology 9 (4) (2024)
Rohan Maddamsetti, Yi Yao, Teng Wang, Junheng Gao, Vincent T Huang, Grayson S Hamrick, Hye-In Son, Lingchong You
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria. Nature communications 15 (1) (2024)
Zongru Li, Qionghua Shen, Grace A Usher, Andrew P Anderson, Manuel Iburg, Richard Lin, Brandon Zimmer, Matthew D Meyer, Alex S Holehouse, Lingchong You, Ashutosh Chilkoti, Yifan Dai, George J Lu
Phase transition of GvpU regulates gas vesicle clustering in bacteria. Nature microbiology 9 (4) (2024)
Emrah Şimşek, Kyeri Kim, Jia Lu, Anita Silver, Nan Luo, Charlotte T Lee, Lingchong You
A 'rich-get-richer' mechanism drives patchy dynamics and resistance evolution in antibiotic-treated bacteria. Molecular systems biology 20 (8) (2024)
Grayson S Hamrick, Rohan Maddamsetti, Hye-In Son, Maggie L Wilson, Harris M Davis, Lingchong You
Programming dynamic division of labor using horizontal gene transfer. bioRxiv : the preprint server for biology (2023)
Jiren Luo, Jiangfeng Chen, Yaoge Huang, Lingchong You, Zhuojun Dai
Engineering living materials by synthetic biology. Biophysics reviews 4 (1) (2023)
Yifan Dai, Mina Farag, Dongheon Lee, Xiangze Zeng, Kyeri Kim, Hye-In Son, Xiao Guo, Jonathan Su, Nikhil Peterson, Javid P Mohammed, Max Ney, Daniel Mark Shapiro, Rohit V Pappu, Ashutosh Chilkoti, Lingchong You
Programmable synthetic biomolecular condensates for cellular control. Nature chemical biology (2023)
Jiren Luo, Jiangfeng Chen, Yaoge Huang, Lingchong You, Zhuojun Dai
Engineering living materials by synthetic biology. Biophysics reviews 4 (1) (2023)
Yasa Baig, Helena R Ma, Helen Xu, Lingchong You
Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamics. Nature communications 14 (1) (2023)
Lin Wang, Xi Zhang, Chenwang Tang, Pengcheng Li, Runtao Zhu, Jing Sun, Yunfeng Zhang, Hua Cui, Jiajia Ma, Xinyu Song, Weiwen Zhang, Xiang Gao, Xiaozhou Luo, Lingchong You, Ye Chen, Zhuojun Dai
Engineering consortia by polymeric microbial swarmbots. Nature communications 13 (1) (2022)
Jonathan H Bethke, Helena R Ma, Ryan Tsoi, Li Cheng, Minfeng Xiao, Lingchong You
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness. Molecular systems biology 19 (2) (2022)
Jonathan H Bethke, Helena R Ma, Ryan Tsoi, Li Cheng, Minfeng Xiao, Lingchong You
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness. Molecular systems biology 19 (2) (2022)
Feilun Wu, Yuanchi Ha, Andrea Weiss, Meidi Wang, Jeffrey Letourneau, Shangying Wang, Nan Luo, Shuquan Huang, Charlotte T Lee, Lawrence A David, Lingchong You
Modulation of microbial community dynamics by spatial partitioning. Nature chemical biology 18 (4) (2022)
Jonathan H Bethke, Helena R Ma, Ryan Tsoi, Li Cheng, Minfeng Xiao, Lingchong You
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness. Molecular systems biology (2022)
Jonathan H Bethke, Helena R Ma, Ryan Tsoi, Li Cheng, Minfeng Xiao, Lingchong You
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness. Molecular systems biology 19 (2) (2022)
Teng Wang, Andrea Weiss, Ammara Aqeel, Feilun Wu, Allison J Lopatkin, Lawrence A David, Lingchong You
Horizontal gene transfer enables programmable gene stability in synthetic microbiota. Nature chemical biology 18 (11) (2022)
Jonathan H Bethke, Helena R Ma, Ryan Tsoi, Li Cheng, Minfeng Xiao, Lingchong You
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness. Molecular systems biology (2022)
Jonathan H Bethke, Helena R Ma, Ryan Tsoi, Li Cheng, Minfeng Xiao, Lingchong You
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness. Molecular systems biology 19 (2) (2022)
Yi Yao, Rohan Maddamsetti, Andrea Weiss, Yuanchi Ha, Teng Wang, Shangying Wang, Lingchong You
Intra- and interpopulation transposition of mobile genetic elements driven by antibiotic selection. Nature ecology & evolution 6 (5) (2022)
Teng Wang, Lingchong You
Bringing cells to the edge. eLife 11 (2022)
Teng Wang, Andrea Weiss, Yuanchi Ha, Lingchong You
Predicting plasmid persistence in microbial communities by coarse-grained modeling. BioEssays : news and reviews in molecular, cellular and developmental biology 43 (9) (2021)
Katherine E Duncker, Zachary A Holmes, Lingchong You
Engineered microbial consortia: strategies and applications. Microbial cell factories 20 (1) (2021)
Yangxiaolu Cao, John Neu, Andrew E Blanchard, Ting Lu, Lingchong You
Repulsive expansion dynamics in colony growth and gene expression. PLoS computational biology 17 (3) (2021)
Nan Luo, Shangying Wang, Jia Lu, Xiaoyi Ouyang, Lingchong You
Collective colony growth is optimized by branching pattern formation in Pseudomonas aeruginosa. Molecular systems biology 17 (4) (2021)
Baizhu Chen, Wei Kang, Jing Sun, Runtao Zhu, Yue Yu, Aiguo Xia, Mei Yu, Meng Wang, Jinyu Han, Yixuan Chen, Lijun Teng, Qiong Tian, Yin Yu, Guanglin Li, Lingchong You, Zhiyuan Liu, Zhuojun Dai
Programmable living assembly of materials by bacterial adhesion. Nature chemical biology 18 (3) (2021)
Zhuojun Dai, Xiaoyu Yang, Feilun Wu, Lihua Wang, Kun Xiang, Pengcheng Li, Qingqing Lv, Jinhui Tang, Anders Dohlman, Lei Dai, Xiling Shen, Lingchong You
Living fabrication of functional semi-interpenetrating polymeric materials. Nature communications 12 (1) (2021)
Jonathan H Bethke, Adam Davidovich, Li Cheng, Allison J Lopatkin, Wenchen Song, Joshua T Thaden, Vance G Fowler, Minfeng Xiao, Lingchong You
Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli. Science advances 6 (4) (2020)
Teng Wang, Lingchong You
The persistence potential of transferable plasmids. Nature communications 11 (1) (2020)
Zhuojun Dai, Anna J Lee, Stefan Roberts, Tatyana A Sysoeva, Shuqiang Huang, Michael Dzuricky, Xiaoyu Yang, Xi Zhang, Zihe Liu, Ashutosh Chilkoti, Lingchong You
Versatile biomanufacturing through stimulus-responsive cell-material feedback. Nature chemical biology 15 (10) (2019)
Shangying Wang, Kai Fan, Nan Luo, Yangxiaolu Cao, Feilun Wu, Carolyn Zhang, Katherine A Heller, Lingchong You
Massive computational acceleration by using neural networks to emulate mechanism-based biological models. Nature communications 10 (1) (2019)
Nan Luo, Shangying Wang, Lingchong You
Synthetic Pattern Formation. Biochemistry 58 (11) (2019)
Hannah R Meredith, Virgile Andreani, Helena R Ma, Allison J Lopatkin, Anna J Lee, Deverick J Anderson, Gregory Batt, Lingchong You
Applying ecological resistance and resilience to dissect bacterial antibiotic responses. Science advances 4 (12) (2018)
Jaydeep K Srimani, Shuqiang Huang, Allison J Lopatkin, Lingchong You
Drug detoxification dynamics explain the postantibiotic effect. Molecular systems biology 13 (10) (2017)