Xiling Shen

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 34

Top Venues

Advanced healthcare materials

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Science advances

eLife

Duke University

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Duke University Jul 01 2015

United States

Associate Professor :: Biomedical Engineering

Cornell University Sep 01 2009 - Jun 30 2015

United States

Assistant Professor :: Electrical Engineering/Biomedical Engineering

Education History

Stanford University Sep 01 2003 - Jul 29 2008

United States

PHD :: Electrical Engineering

Stanford University Sep 23 1997 - Jun 20 2001

United States

MSC :: Electrical Engineering

Publications

Kun Xiang, Ergang Wang, John Mantyh, Gabrielle Rupprecht, Marcos Negrete, Golshid Sanati, Carolyn Hsu, Peggy Randon, Anders Dohlman, Kai Kretzschmar, Shree Bose, Nicholas Giroux, Shengli Ding, Lihua Wang, Jorge Prado Balcazar, Qiang Huang, Pasupathi Sundaramoorthy, Rui Xi, Shannon Jones McCall, Zhaohui Wang, Chongming Jiang, Yubin Kang, Scott Kopetz, Gregory E Crawford, Steven M Lipkin, Xiao-Fan Wang, Hans Clevers, David Hsu, Xiling Shen
Chromatin Remodeling in Patient-Derived Colorectal Cancer Models. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (16) (2024)
Kun Xiang, Ergang Wang, John Mantyh, Gabrielle Rupprecht, Marcos Negrete, Golshid Sanati, Carolyn Hsu, Peggy Randon, Anders Dohlman, Kai Kretzschmar, Shree Bose, Nicholas Giroux, Shengli Ding, Lihua Wang, Jorge Prado Balcazar, Qiang Huang, Pasupathi Sundaramoorthy, Rui Xi, Shannon Jones McCall, Zhaohui Wang, Chongming Jiang, Yubin Kang, Scott Kopetz, Gregory E Crawford, Steven M Lipkin, Xiao-Fan Wang, Hans Clevers, David Hsu, Xiling Shen
Chromatin Remodeling in Patient-Derived Colorectal Cancer Models. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Kun Xiang, Ergang Wang, John Mantyh, Gabrielle Rupprecht, Marcos Negrete, Golshid Sanati, Carolyn Hsu, Peggy Randon, Anders Dohlman, Kai Kretzschmar, Shree Bose, Nicholas Giroux, Shengli Ding, Lihua Wang, Jorge Prado Balcazar, Qiang Huang, Pasupathi Sundaramoorthy, Rui Xi, Shannon Jones McCall, Zhaohui Wang, Chongming Jiang, Yubin Kang, Scott Kopetz, Gregory E Crawford, Steven M Lipkin, Xiao-Fan Wang, Hans Clevers, David Hsu, Xiling Shen
Chromatin Remodeling in Patient-Derived Colorectal Cancer Models. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (16) (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials (2024)
Xiaoyi Zhu, Qiang Huang, Lai-Ming Jiang, Van-Tu Nguyen, Tri Vu, Garth Devlin, Jabbar Shaima, Xiaobei Wang, Yong Chen, Lijun Ma, Kun Xiang, Ergang Wang, Qiangzhou Rong, Qifa Zhou, Yubin Kang, Aravind Asokan, Liping Feng, Shiao-Wen D Hsu, Xiling Shen, Junjie Yao
Longitudinal intravital imaging of mouse placenta. Science advances 10 (12) (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials 13 (21) (2024)
Xiaoyi Zhu, Qiang Huang, Lai-Ming Jiang, Van-Tu Nguyen, Tri Vu, Garth Devlin, Jabbar Shaima, Xiaobei Wang, Yong Chen, Lijun Ma, Kun Xiang, Ergang Wang, Qiangzhou Rong, Qifa Zhou, Yubin Kang, Aravind Asokan, Liping Feng, Shiao-Wen D Hsu, Xiling Shen, Junjie Yao
Longitudinal intravital imaging of mouse placenta. Science advances 10 (12) (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials (2024)
Kun Xiang, Ergang Wang, John Mantyh, Gabrielle Rupprecht, Marcos Negrete, Golshid Sanati, Carolyn Hsu, Peggy Randon, Anders Dohlman, Kai Kretzschmar, Shree Bose, Nicholas Giroux, Shengli Ding, Lihua Wang, Jorge Prado Balcazar, Qiang Huang, Pasupathi Sundaramoorthy, Rui Xi, Shannon Jones McCall, Zhaohui Wang, Chongming Jiang, Yubin Kang, Scott Kopetz, Gregory E Crawford, Steven M Lipkin, Xiao-Fan Wang, Hans Clevers, David Hsu, Xiling Shen
Chromatin Remodeling in Patient-Derived Colorectal Cancer Models. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (16) (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials 13 (21) (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials (2024)
Danial Khorsandi, Jia-Wei Yang, Samuel Foster, Safoora Khosravi, Negar Hosseinzadeh Kouchehbaghi, Fahimeh Zarei, Yun Bin Lee, Farhana Runa, Ankit Gangrade, Leon Voskanian, Darbaz Adnan, Yangzhi Zhu, Zhaohui Wang, Vadim Jucaud, Mehmet Remzi Dokmeci, Xiling Shen, Faraz Bishehsari, Jonathan A Kelber, Ali Khademhosseini, Natan Roberto de Barros
Patient-Derived Organoids as Therapy Screening Platforms in Cancer Patients. Advanced healthcare materials 13 (21) (2024)
Xiaoyi Zhu, Qiang Huang, Lai-Ming Jiang, Van-Tu Nguyen, Tri Vu, Garth Devlin, Jabbar Shaima, Xiaobei Wang, Yong Chen, Lijun Ma, Kun Xiang, Ergang Wang, Qiangzhou Rong, Qifa Zhou, Yubin Kang, Aravind Asokan, Liping Feng, Shiao-Wen D Hsu, Xiling Shen, Junjie Yao
Longitudinal intravital imaging of mouse placenta. Science advances 10 (12) (2024)
Robert C Mines, Tomasz Lipniacki, Xiling Shen
Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts. PLoS computational biology 18 (2) (2022)
Aliesha D O'Raw, Nikolai Rakhilin, Nian Wang, Jennifer McKey, Gary Cofer, Robert Bj Anderson, Blanche Capel, G Allan Johnson, Xiling Shen
Mapping the peripheral nervous system in the whole mouse via compressed sensing tractography. Journal of neural engineering 18 (4) (2021)
Lihua Wang, Ergang Wang, Jorge Prado Balcazar, Zhenzhen Wu, Kun Xiang, Yi Wang, Qiang Huang, Marcos Negrete, Kai-Yuan Chen, Wei Li, Yujie Fu, Anders Dohlman, Robert Mines, Liwen Zhang, Yoshihiko Kobayashi, Tianyi Chen, Guizhi Shi, John Paul Shen, Scott Kopetz, Purushothama Rao Tata, Victor Moreno, Charles Gersbach, Gregory Crawford, David Hsu, Emina Huang, Pengcheng Bu, Xiling Shen
Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF-PU.1-DPP4 Axis. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 8 (19) (2021)
Samaneh K Sarvestani, Steven Signs, Bo Hu, Yunku Yeu, Hao Feng, Ying Ni, David R Hill, Robert C Fisher, Sylvain Ferrandon, Reece K DeHaan, Jennifer Stiene, Michael Cruise, Tae Hyun Hwang, Xiling Shen, Jason R Spence, Emina H Huang
Induced organoids derived from patients with ulcerative colitis recapitulate colitic reactivity. Nature communications 12 (1) (2021)
Zhuojun Dai, Xiaoyu Yang, Feilun Wu, Lihua Wang, Kun Xiang, Pengcheng Li, Qingqing Lv, Jinhui Tang, Anders Dohlman, Lei Dai, Xiling Shen, Lingchong You
Living fabrication of functional semi-interpenetrating polymeric materials. Nature communications 12 (1) (2021)
Jason A Somarelli, Roham Salman Roghani, Ali Sanjari Moghaddam, Beatrice C Thomas, Gabrielle Rupprecht, Kathryn E Ware, Erdem Altunel, John B Mantyh, So Young Kim, Shannon J McCall, Xiling Shen, Christopher R Mantyh, David S Hsu
A Precision Medicine Drug Discovery Pipeline Identifies Combined CDK2 and 9 Inhibition as a Novel Therapeutic Strategy in Colorectal Cancer. Molecular cancer therapeutics 19 (12) (2020)
Michael Bauer, Zuzana Nascakova, Anca-Irina Mihai, Phil Fang Cheng, Mitchell P Levesque, Simon Lampart, Robert Hurwitz, Lennart Pfannkuch, Jana Dobrovolna, Melanie Jacobs, Sina Bartfeld, Anders Dohlman, Xiling Shen, Alevtina A Gall, Nina R Salama, Antonia Töpfer, Achim Weber, Thomas F Meyer, Pavel Janscak, Anne Müller
The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress. Nature communications 11 (1) (2020)
Qiang Huang, Malkiel A Cohen, Fernando C Alsina, Garth Devlin, Aliesha D O'Raw, Jennifer McKey, Patrick Havlik, Nikolai Rakhilin, Ergang Wang, Kun Xiang, Parker Mathews, Lihua Wang, Cheryl Bock, Victor A Ruthig, Yi Wang, Marcos Negrete, Chi Wut Wong, Preetish K L Murthy, Shupei Zhang, Andrea R Daniel, David G Kirsch, Yubin Kang, Blanche Capel, Aravind Asokan, Debra L Silver, Rudolf Jaenisch, Xiling Shen
Intravital imaging of mouse embryos. Science (New York, N.Y.) 368 (6487) (2020)
Rui Xi, Preetish Kadur Lakshminarasimha Murthy, Kuei-Ling Tung, Cynthia D Guy, Ji Wan, Feng Li, Zhuo Wang, Xiaodong Li, Anastasia Varanko, Nikolai Rakhilin, Yongning Xin, Botao Liu, Shu-Bing Qian, Lishan Su, Yan Han, Xiling Shen
SENP3-mediated host defense response contains HBV replication and restores protein synthesis. PloS one 14 (1) (2019)
Jiahn Choi, Nikolai Rakhilin, Poornima Gadamsetty, Daniel J Joe, Tahmineh Tabrizian, Steven M Lipkin, Derek M Huffman, Xiling Shen, Nozomi Nishimura
Author Correction: Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging. Scientific reports 9 (1) (2019)
Yitian Xu, Lu Huang, Jonathan L Kirschman, Daryll A Vanover, Pooja Munnilal Tiwari, Philip J Santangelo, Xiling Shen, David G Russell
Exploitation of Synthetic mRNA To Drive Immune Effector Cell Recruitment and Functional Reprogramming In Vivo. Journal of immunology (Baltimore, Md. : 1950) 202 (2) (2018)
Melanie Maya Kaelberer, Kelly L Buchanan, Marguerita E Klein, Bradley B Barth, Marcia M Montoya, Xiling Shen, Diego V Bohórquez
A gut-brain neural circuit for nutrient sensory transduction. Science (New York, N.Y.) 361 (6408) (2018)
Yitian Xu, Lihua Wang, Matthew D Zimmerman, Kai-Yuan Chen, Lu Huang, Dah-Jiun Fu, Firat Kaya, Nikolai Rakhilin, Evgeniya V Nazarova, Pengcheng Bu, Veronique Anne Dartois, David G Russell, Xiling Shen
Matrix metalloproteinase inhibitors enhance the efficacy of frontline drugs against Mycobacterium tuberculosis. PLoS pathogens 14 (4) (2018)
Preetish K L Murthy, Tara Srinivasan, Matthew S Bochter, Rui Xi, Anastasia Kristine Varanko, Kuei-Ling Tung, Fatih Semerci, Keli Xu, Mirjana Maletic-Savatic, Susan E Cole, Xiling Shen
Radical and lunatic fringes modulate notch ligands to support mammalian intestinal homeostasis. eLife 7 (2018)
Lihua Wang, Ergang Wang, Yi Wang, Robert Mines, Kun Xiang, Zhiguo Sun, Gaiting Zhou, Kai-Yuan Chen, Nikolai Rakhilin, Shanshan Chao, Gaoqi Ye, Zhenzhen Wu, Huiwen Yan, Hong Shen, Jeffrey Everitt, Pengcheng Bu, Xiling Shen
miR-34a is a microRNA safeguard for Citrobacter-induced inflammatory colon oncogenesis. eLife 7 (2018)
Jiahn Choi, Nikolai Rakhilin, Poornima Gadamsetty, Daniel J Joe, Tahmineh Tabrizian, Steven M Lipkin, Derek M Huffman, Xiling Shen, Nozomi Nishimura
Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging. Scientific reports 8 (1) (2018)
Kai-Yuan Chen, Tara Srinivasan, Kuei-Ling Tung, Julio Monti Belmonte, Lihua Wang, Preetish Kadur Lakshminarasimha Murthy, Jiahn Choi, Nikolai Rakhilin, Sarah King, Anastasia Kristine Varanko, Mavee Witherspoon, Nozomi Nishimura, James A Glazier, Steven M Lipkin, Pengcheng Bu, Xiling Shen
A Notch positive feedback in the intestinal stem cell niche is essential for stem cell self-renewal. Molecular systems biology 13 (4) (2017)
Subhash Kulkarni, Maria-Adelaide Micci, Jenna Leser, Changsik Shin, Shiue-Cheng Tang, Ya-Yuan Fu, Liansheng Liu, Qian Li, Monalee Saha, Cuiping Li, Grigori Enikolopov, Laren Becker, Nikolai Rakhilin, Michael Anderson, Xiling Shen, Xinzhong Dong, Manish J Butte, Hongjun Song, E Michelle Southard-Smith, Raj P Kapur, Milena Bogunovic, Pankaj Jay Pasricha
Adult enteric nervous system in health is maintained by a dynamic balance between neuronal apoptosis and neurogenesis. Proceedings of the National Academy of Sciences of the United States of America 114 (18) (2017)
Lihua Wang, Pengcheng Bu, Yiwei Ai, Tara Srinivasan, Huanhuan Joyce Chen, Kun Xiang, Steven M Lipkin, Xiling Shen
A long non-coding RNA targets microRNA miR-34a to regulate colon cancer stem cell asymmetric division. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xiling Shen