Lixin Cheng

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Venues

Bioinformatics (Oxford, England)

Briefings in bioinformatics

bioRxiv : the preprint server for biology

Nature communications

Shenzhen People's Hospital

Chinese University of Hong Kong (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Shenzhen People's Hospital

China

PI :: ICU

Chinese University of Hong Kong

Hong Kong

Postdoctoral Fellow :: School of Life Sciences

Education History

Chinese University of Hong Kong

Hong Kong

PHD :: Department of Computer Science and Engineering

Publications

Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Tongling Huang, Zhaocheng Lu, Zihui Wang, Lixin Cheng, Lu Gao, Jun Gao, Ning Zhang, Chang-An Geng, Xiaoli Zhao, Huaiyu Wang, Chi-Wai Wong, Kelvin Wai-Kwok Yeung, Haobo Pan, William Weijia Lu, Min Guan
Targeting adipocyte ESRRA promotes osteogenesis and vascular formation in adipocyte-rich bone marrow. Nature communications 15 (1) (2024)
Ning Zhang, Fengxia Yang, Pengfei Zhao, Nana Jin, Haonan Wu, Tao Liu, Qingshan Geng, Xiaojun Yang, Lixin Cheng
MrGPS: an m6A-related gene pair signature to predict the prognosis and immunological impact of glioma patients. Briefings in bioinformatics 25 (1) (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Tongling Huang, Zhaocheng Lu, Zihui Wang, Lixin Cheng, Lu Gao, Jun Gao, Ning Zhang, Chang-An Geng, Xiaoli Zhao, Huaiyu Wang, Chi-Wai Wong, Kelvin Wai-Kwok Yeung, Haobo Pan, William Weijia Lu, Min Guan
Targeting adipocyte ESRRA promotes osteogenesis and vascular formation in adipocyte-rich bone marrow. Nature communications 15 (1) (2024)
Ning Zhang, Fengxia Yang, Pengfei Zhao, Nana Jin, Haonan Wu, Tao Liu, Qingshan Geng, Xiaojun Yang, Lixin Cheng
MrGPS: an m6A-related gene pair signature to predict the prognosis and immunological impact of glioma patients. Briefings in bioinformatics 25 (1) (2024)
Jun Wang, Marc Horlacher, Lixin Cheng, Ole Winther
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning. Bioinformatics (Oxford, England) 40 (2) (2024)
Jun Wang, Marc Horlacher, Lixin Cheng, Ole Winther
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning. Bioinformatics (Oxford, England) 40 (2) (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Ning Zhang, Fengxia Yang, Pengfei Zhao, Nana Jin, Haonan Wu, Tao Liu, Qingshan Geng, Xiaojun Yang, Lixin Cheng
MrGPS: an m6A-related gene pair signature to predict the prognosis and immunological impact of glioma patients. Briefings in bioinformatics 25 (1) (2024)
Shuojia Wang, Chengyuan Yu, Jing Zhu, Pengfei Zhao, Nana Jin, Lixin Cheng, Lin Kang
Multimorbidity patterns, leisure activities, and cognitive function: A population-based longitudinal study. The journals of gerontology. Series A, Biological sciences and medical sciences (2024)
Tongling Huang, Zhaocheng Lu, Zihui Wang, Lixin Cheng, Lu Gao, Jun Gao, Ning Zhang, Chang-An Geng, Xiaoli Zhao, Huaiyu Wang, Chi-Wai Wong, Kelvin Wai-Kwok Yeung, Haobo Pan, William Weijia Lu, Min Guan
Targeting adipocyte ESRRA promotes osteogenesis and vascular formation in adipocyte-rich bone marrow. Nature communications 15 (1) (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Ning Zhang, Fengxia Yang, Pengfei Zhao, Nana Jin, Haonan Wu, Tao Liu, Qingshan Geng, Xiaojun Yang, Lixin Cheng
MrGPS: an m6A-related gene pair signature to predict the prognosis and immunological impact of glioma patients. Briefings in bioinformatics 25 (1) (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Jun Wang, Marc Horlacher, Lixin Cheng, Ole Winther
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning. Bioinformatics (Oxford, England) 40 (2) (2024)
Ran Wang, Xubin Zheng, Fangda Song, Man Hon Wong, Kwong Sak Leung, Lixin Cheng
Deciphering associations between gut microbiota and clinical factors using microbial modules. Bioinformatics (Oxford, England) 39 (5) (2023)
Qizhi Li, Xubin Zheng, Jize Xie, Ran Wang, Mengyao Li, Man-Hon Wong, Kwong-Sak Leung, Shuai Li, Qingshan Geng, Lixin Cheng
bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks. Bioinformatics (Oxford, England) 39 (3) (2023)
Lixin Cheng, Haonan Wu, Xubin Zheng, Ning Zhang, Pengfei Zhao, Ran Wang, Qiong Wu, Tao Liu, Xiaojun Yang, Qingshan Geng
GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion. Bioinformatics (Oxford, England) 39 (1) (2023)
Jun Wang, Marc Horlacher, Lixin Cheng, Ole Winther
RNA trafficking and subcellular localization-a review of mechanisms, experimental and predictive methodologies. Briefings in bioinformatics (2023)
Ran Wang, Xubin Zheng, Fangda Song, Man Hon Wong, Kwong Sak Leung, Lixin Cheng
Deciphering associations between gut microbiota and clinical factors using microbial modules. Bioinformatics (Oxford, England) 39 (5) (2023)
Lixin Cheng, Haonan Wu, Xubin Zheng, Ning Zhang, Pengfei Zhao, Ran Wang, Qiong Wu, Tao Liu, Xiaojun Yang, Qingshan Geng
GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion. Bioinformatics (Oxford, England) 39 (1) (2023)
Lixin Cheng, Haonan Wu, Xubin Zheng, Ning Zhang, Pengfei Zhao, Ran Wang, Qiong Wu, Tao Liu, Xiaojun Yang, Qingshan Geng
GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion. Bioinformatics (Oxford, England) 39 (1) (2023)
Qiong Wu, Xubin Zheng, Kwong-Sak Leung, Man-Hon Wong, Stephen Kwok-Wing Tsui, Lixin Cheng
meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data. Bioinformatics (Oxford, England) 38 (14) (2022)
Ran Wang, Xubin Zheng, Jun Wang, Shibiao Wan, Fangda Song, Man Hon Wong, Kwong Sak Leung, Lixin Cheng
Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia. Briefings in bioinformatics 23 (2) (2022)
Baiying Li, Yonglun Zeng, Wenhan Cao, Wenxin Zhang, Lixin Cheng, Haidi Yin, Qian Wu, Xiangfeng Wang, Yan Huang, Wilson Chun Yu Lau, Zhong-Ping Yao, Yusong Guo, Liwen Jiang
A distinct giant coat protein complex II vesicle population in Arabidopsis thaliana. Nature plants 7 (10) (2021)
Kenneth C P Cheung, Silvia Fanti, Claudio Mauro, Guosu Wang, Anitha S Nair, Hongmei Fu, Silvia Angeletti, Silvia Spoto, Marta Fogolari, Francesco Romano, Dunja Aksentijević, Weiwei Liu, Baiying Li, Lixin Cheng, Liwen Jiang, Juho Vuononvirta, Thanushiyan R Poobalasingam, David M Smith, Massimo Ciccozzi, Egle Solito, Federica M Marelli-Berg
Preservation of microvascular barrier function requires CD31 receptor-induced metabolic reprogramming. Nature communications 11 (1) (2020)
Linting Li, Min Liu, Ludan Yue, Rui Wang, Ning Zhang, Yujie Liang, Liang Zhang, Lixin Cheng, Jiang Xia, Ruibing Wang
Host-Guest Protein Assembly for Affinity Purification of Methyllysine Proteomes. Analytical chemistry 92 (13) (2020)
Lixin Cheng, Yonglun Zeng, Shuai Hu, Ning Zhang, Kenneth C P Cheung, Baiying Li, Kwong-Sak Leung, Liwen Jiang
Systematic prediction of autophagy-related proteins using Arabidopsis thaliana interactome data. The Plant journal : for cell and molecular biology 105 (3) (2020)
Lixin Cheng, Chuanchuan Nan, Lin Kang, Ning Zhang, Sheng Liu, Huaisheng Chen, Chengying Hong, Youlian Chen, Zhen Liang, Xueyan Liu
Whole blood transcriptomic investigation identifies long non-coding RNAs as regulators in sepsis. Journal of translational medicine 18 (1) (2020)
Xueyan Liu, Xubin Zheng, Jun Wang, Ning Zhang, Kwong-Sak Leung, Xiufeng Ye, Lixin Cheng
A long non-coding RNA signature for diagnostic prediction of sepsis upon ICU admission. Clinical and translational medicine 10 (3) (2020)
Jun Wang, Xiuqing Zhang, Lixin Cheng, Yonglun Luo
An overview and metanalysis of machine and deep learning-based CRISPR gRNA design tools. RNA biology 17 (1) (2019)
Qiong Zhao, Jinbo Shen, Cai-Ji Gao, Yong Cui, Yongyi Wang, Jie Cui, Lixin Cheng, Wenhan Cao, Ying Zhu, Shuxian Huang, Qianzi Zhou, Cheuk Ka Leong, King Pong Leung, Xuemei Chen, Liwen Jiang
RST1 Is a FREE1 Suppressor That Negatively Regulates Vacuolar Trafficking in Arabidopsis. The Plant cell 31 (9) (2019)
Lixin Cheng, Pengfei Liu, Dong Wang, Kwong-Sak Leung
Exploiting locational and topological overlap model to identify modules in protein interaction networks. BMC bioinformatics 20 (1) (2019)
Lixin Cheng, Kaili Fan, Yan Huang, Dong Wang, Kwong-Sak Leung
Full Characterization of Localization Diversity in the Human Protein Interactome. Journal of proteome research 16 (8) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Lixin Cheng