Kevin Y Yip (Kevin Yip)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 37

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Genome research

Chinese University of Hong Kong

Yale University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Chinese University of Hong Kong Aug 01 2016

Hong Kong

Associate Professor (tenured) :: Department of Computer Science and Engineering

Chinese University of Hong Kong Aug 01 2010 - Jul 31 2016

Hong Kong

Assistant Professor :: Department of Computer Science and Engineering

PCC Skyhorse Limited

Hong Kong

Senior IS Developer

Show8 Cyber Media Limited

Hong Kong

IT Developer

Sun Hung Kai & Co. Ltd.

Hong Kong

Web Administrator :: Research Department

Education History

Yale University

United States

PHD

University of Hong Kong

Hong Kong

MSC

University of Hong Kong

Hong Kong

BSC

Publications

Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Nirmalya Dasgupta, Xue Lei, Christina Huan Shi, Rouven Arnold, Marcos G Teneche, Karl N Miller, Adarsh Rajesh, Andrew Davis, Valesca Anschau, Alexandre R Campos, Rebecca Gilson, Aaron Havas, Shanshan Yin, Zong Ming Chua, Tianhui Liu, Jessica M Proulx, Michael Alcaraz, Mohammed Iqbal Rather, Josue Baeza, David C. Schultz, Kevin Y Yip, Shelley L Berger, Peter D Adams
Histone chaperone HIRA, Promyelocytic Leukemia (PML) protein and p62/SQSTM1 coordinate to regulate inflammation during cell senescence. bioRxiv : the preprint server for biology (2024)
Nirmalya Dasgupta, Xue Lei, Christina Huan Shi, Rouven Arnold, Marcos G Teneche, Karl N Miller, Adarsh Rajesh, Andrew Davis, Valesca Anschau, Alexandre R Campos, Rebecca Gilson, Aaron Havas, Shanshan Yin, Zong Ming Chua, Tianhui Liu, Jessica M Proulx, Michael Alcaraz, Mohammed Iqbal Rather, Josue Baeza, David C. Schultz, Kevin Y Yip, Shelley L Berger, Peter D Adams
Histone chaperone HIRA, Promyelocytic Leukemia (PML) protein and p62/SQSTM1 coordinate to regulate inflammation during cell senescence. bioRxiv : the preprint server for biology (2024)
Wenyu Chen, Chen Miao, Zhenghao Zhang, Cathy Sin-Hang Fung, Ran Wang, Yizhen Chen, Yan Qian, Lixin Cheng, Kevin Y Yip, Stephen Kwok-Wing Tsui, Qin Cao
Commonly used software tools produce conflicting and overly-optimistic AUPRC values. bioRxiv : the preprint server for biology (2024)
Jiamin Chen, Daniel Rebibo, Jianquan Cao, Simon Yat-Man Mok, Neel Patel, Po-Cheng Tseng, Zhenghao Zhang, Kevin Y Yip
ICI efficacy information portal: a knowledgebase for responder prediction to immune checkpoint inhibitors. NAR cancer 5 (1) (2023)
Kelly Yichen Li, Claudia Ha-Ting Tam, Hongbo Liu, Samantha E Day, Cadmon King Poo Lim, Wing Yee So, Chuiguo Huang, Guozhi Jiang, Mai Shi, Heung-Man Lee, null null, Hui Yao Lan, Cheuk-Chun Szeto, Robert L Hanson, Robert G Nelson, Katalin Suszták, Juliana Chung Ngor Chan, Kevin Y Yip, Ronald Ching-Wan Ma
DNA methylation markers for kidney function and progression of diabetic kidney disease. Nature communications 14 (1) (2023)
Jiamin Chen, Daniel Rebibo, Jianquan Cao, Simon Yat-Man Mok, Neel Patel, Po-Cheng Tseng, Zhenghao Zhang, Kevin Y Yip
ICI efficacy information portal: a knowledgebase for responder prediction to immune checkpoint inhibitors. NAR cancer 5 (1) (2023)
Kelly Yichen Li, Claudia Ha-Ting Tam, Hongbo Liu, Samantha E Day, Cadmon King Poo Lim, Wing Yee So, Chuiguo Huang, Guozhi Jiang, Mai Shi, Heung-Man Lee, null null, Hui Yao Lan, Cheuk-Chun Szeto, Robert L Hanson, Robert G Nelson, Katalin Suszták, Juliana Chung Ngor Chan, Kevin Y Yip, Ronald Ching-Wan Ma
DNA methylation markers for kidney function and progression of diabetic kidney disease. Nature communications 14 (1) (2023)
Kelly Yichen Li, Claudia Ha-Ting Tam, Hongbo Liu, Samantha E Day, Cadmon King Poo Lim, Wing Yee So, Chuiguo Huang, Guozhi Jiang, Mai Shi, Heung-Man Lee, null null, Hui Yao Lan, Cheuk-Chun Szeto, Robert L Hanson, Robert G Nelson, Katalin Suszták, Juliana Chung Ngor Chan, Kevin Y Yip, Ronald Ching-Wan Ma
DNA methylation markers for kidney function and progression of diabetic kidney disease. Nature communications 14 (1) (2023)
Jiamin Chen, Daniel Rebibo, Jianquan Cao, Simon Yat-Man Mok, Neel Patel, Po-Cheng Tseng, Zhenghao Zhang, Kevin Y Yip
ICI efficacy information portal: a knowledgebase for responder prediction to immune checkpoint inhibitors. NAR cancer 5 (1) (2023)
Benjamin Van Espen, Htoo Zarni Oo, Colin Collins, Ladan Fazil, Napoleone Ferrara, Kevin Y Yip, Rabi Murad, Martin E Gleave, Ze'ev A Ronai
RNF185 control of COL3A1 expression limits prostate cancer migration and metastatic potential. Molecular cancer research : MCR (2023)
Tiffany Y K Au, Raymond K H Yip, Sarah L Wynn, Tiong Yang Tan, Alex Fu, Yu Hong Geng, Irene Y Y Szeto, Ben Niu, Kevin Y Yip, Martin C H Cheung, Robin Lovell-Badge, Kathryn Song Eng Cheah
Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Tiffany Y K Au, Raymond K H Yip, Sarah L Wynn, Tiong Yang Tan, Alex Fu, Yu Hong Geng, Irene Y Y Szeto, Ben Niu, Kevin Y Yip, Martin C H Cheung, Robin Lovell-Badge, Kathryn Song Eng Cheah
Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Tiffany Y K Au, Raymond K H Yip, Sarah L Wynn, Tiong Yang Tan, Alex Fu, Yu Hong Geng, Irene Y Y Szeto, Ben Niu, Kevin Y Yip, Martin C H Cheung, Robin Lovell-Badge, Kathryn Song Eng Cheah
Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Jeff P Bruce, Ka-Fai To, Vivian Wai Yan Lui, Grace T Y Chung, Yuk-Yu Chan, Chi Man Tsang, Kevin Y Yip, Brigette Buig Yue Ma, John K S Woo, Edwin Pun Hui, Michael K F Mak, Sau-Dan Lee, Chit Chow, Sharmila Velapasamy, Yvonne Y Y Or, Pui Kei Siu, Samah El Ghamrasni, Stephenie D Prokopec, Man Wu, Johnny S H Kwan, Yuchen Liu, Jason Ying-Kuen Chan, C Andrew van Hasselt, Lawrence S Young, Christopher W Dawson, Ian Charles Paterson, Lee Fah Yap, Sai-Wah Tsao, Fei-Fei Liu, Anthony T C Chan, Trevor J Pugh, Kwok-Wai Lo
Author Correction: Whole-genome profiling of nasopharyngeal carcinoma reveals viral-host co-operation in inflammatory NF-κB activation and immune escape. Nature communications 13 (1) (2022)
Yu Li, Siyuan Chen, Trisevgeni Rapakoulia, Hiroyuki Kuwahara, Kevin Y Yip, Xin Gao
Deep learning identifies and quantifies recombination hotspot determinants. Bioinformatics (Oxford, England) 38 (10) (2022)
Tiffany Y K Au, Raymond K H Yip, Sarah L Wynn, Tiong Yang Tan, Alex Fu, Yu Hong Geng, Irene Y Y Szeto, Ben Niu, Kevin Y Yip, Martin C H Cheung, Robin Lovell-Badge, Kathryn Song Eng Cheah
Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Tiffany Y K Au, Raymond K H Yip, Sarah L Wynn, Tiong Yang Tan, Alex Fu, Yu Hong Geng, Irene Y Y Szeto, Ben Niu, Kevin Y Yip, Martin C H Cheung, Robin Lovell-Badge, Kathryn Song Eng Cheah
Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Tiffany Y K Au, Raymond K H Yip, Sarah L Wynn, Tiong Yang Tan, Alex Fu, Yu Hong Geng, Irene Y Y Szeto, Ben Niu, Kevin Y Yip, Martin C H Cheung, Robin Lovell-Badge, Kathryn Song Eng Cheah
Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Sau-Dan Lee, Man Wu, Kwok-Wai Lo, Kevin Y Yip
Accurate reconstruction of viral genomes in human cells from short reads using iterative refinement. BMC genomics 23 (1) (2022)
Ken Hung-On Yu, Christina Huan Shi, Bo Wang, Savio Ho-Chit Chow, Grace Tin-Yun Chung, Raymond Wai-Ming Lung, Ke-En Tan, Yat-Yuen Lim, Anna Chi-Man Tsang, Kwok-Wai Lo, Kevin Y Yip
Quantifying full-length circular RNAs in cancer. Genome research (2021)
Jeff P Bruce, Ka-Fai To, Vivian Wai Yan Lui, Grace T Y Chung, Yuk-Yu Chan, Chi Man Tsang, Kevin Y Yip, Brigette Buig Yue Ma, John K S Woo, Edwin Pun Hui, Michael K F Mak, Sau-Dan Lee, Chit Chow, Sharmila Velapasamy, Yvonne Y Y Or, Pui Kei Siu, Samah El Ghamrasni, Stephenie D Prokopec, Man Wu, Johnny S H Kwan, Yuchen Liu, Jason Ying-Kuen Chan, C Andrew van Hasselt, Lawrence S Young, Christopher W Dawson, Ian Charles Paterson, Lee Fah Yap, Sai-Wah Tsao, Fei-Fei Liu, Anthony T C Chan, Trevor J Pugh, Kwok-Wai Lo
Whole-genome profiling of nasopharyngeal carcinoma reveals viral-host co-operation in inflammatory NF-κB activation and immune escape. Nature communications 12 (1) (2021)
Wenyan Nong, Zhe Qu, Yiqian Li, Tom Barton-Owen, Annette Y P Wong, Ho Yin Yip, Hoi Ting Lee, Satya Narayana, Tobias Baril, Thomas Swale, Jianquan Cao, Ting-Fung Chan, Hoi Shan Kwan, Sai Ming Ngai, Gianni Panagiotou, Pei-Yuan Qian, Jian-Wen Qiu, Kevin Y Yip, Noraznawati Ismail, Siddhartha Pati, Akbar John, Stephen S Tobe, William G Bendena, Siu Gin Cheung, Alexander Hayward, Jerome Ho-Lam Hui
Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. Communications biology 4 (1) (2021)
Wenyan Nong, Jianquan Cao, Yiqian Li, Zhe Qu, Jin Sun, Thomas Swale, Ho Yin Yip, Pei-Yuan Qian, Jian-Wen Qiu, Hoi Shan Kwan, William G Bendena, Stephen S Tobe, Ting-Fung Chan, Kevin Y Yip, Ka Hou Chu, Sai Ming Ngai, Karl Yk Tsim, Peter W H Holland, Jerome Ho-Lam Hui
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing. Nature communications 11 (1) (2020)
Anurag Sethi, Mengting Gu, Emrah Gumusgoz, Landon Chan, Koon-Kiu Yan, Joel Rozowsky, Iros Barozzi, Veena Afzal, Jennifer A Akiyama, Ingrid Plajzer-Frick, Chengfei Yan, Catherine S Novak, Momoe Kato, Tyler H Garvin, Quan Pham, Anne Harrington, Brandon J Mannion, Elizabeth A Lee, Yoko Fukuda-Yuzawa, Axel Visel, Diane E Dickel, Kevin Y Yip, Richard Sutton, Len A Pennacchio, Mark B Gerstein
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation. Nature methods 17 (8) (2020)
Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif O Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J Klein, Michael Paul Snyder, David M Gilbert, Kevin Y Yip, Chao Cheng, Feng Yue, X Shirley Liu, Kevin P White, Mark B Gerstein
An integrative ENCODE resource for cancer genomics. Nature communications 11 (1) (2020)
Alexander Xi Fu, Kathy Nga-Chu Lui, Clara Sze-Man Tang, Ray Kit Ng, Frank Pui-Ling Lai, Sin-Ting Lau, Zhixin Li, Maria-Mercè Garcia-Barcelo, Pak-Chung Sham, Paul Kwong-Hang Tam, Elly Sau-Wai Ngan, Kevin Y Yip
Whole-genome analysis of noncoding genetic variations identifies multiscale regulatory element perturbations associated with Hirschsprung disease. Genome research 30 (11) (2020)
Qin Cao, Kevin Y Yip
Reply to 'Inflated performance measures in enhancer-promoter interaction-prediction methods'. Nature genetics 51 (8) (2020)
Michal Levy-Sakin, Steven Pastor, Yulia Mostovoy, Le Li, Alden K Y Leung, Jennifer McCaffrey, Eleanor Young, Ernest T Lam, Alex R Hastie, Karen H Y Wong, Claire Yik-Lok Chung, Walfred Ma, Justin Sibert, Ramakrishnan Rajagopalan, Nana Jin, Eugene Y C Chow, Catherine Chu, Annie Poon, Chin Lin, Ahmed Naguib, Wei-Ping Wang, Han Cao, Ting-Fung Chan, Kevin Y Yip, Ming Xiao, Pui-Yan Kwok
Genome maps across 26 human populations reveal population-specific patterns of structural variation. Nature communications 10 (1) (2019)
Lei Xiong, Feng Wu, Qiong Wu, Liangliang Xu, Otto K Cheung, Wei Kang, Myth T Mok, Lemuel L M Szeto, Cheuk-Yin Lun, Raymond W Lung, Jinglin Zhang, Ken H Yu, Sau-Dan Lee, Guangcun Huang, Chiou-Miin Wang, Joseph Liu, Zhuo Yu, Dae-Yeul Yu, Jian-Liang Chou, Wan-Hong Huang, Bo Feng, Yue-Sun Cheung, Paul B Lai, Patrick Tan, Nathalie Wong, Michael Wing-Yan Chan, Tim H Huang, Kevin Y Yip, Alfred S Cheng, Ka-Fai To
Aberrant enhancer hypomethylation contributes to hepatic carcinogenesis through global transcriptional reprogramming. Nature communications 10 (1) (2019)
Le Li, Yuwei Gao, Qiong Wu, Alfred Sze-Lok Cheng, Kevin Y Yip
New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation. Genome research 29 (4) (2019)
Weitao Lin, Yim Ling Yip, Lin Jia, Wen Deng, Hong Zheng, Wei Dai, Josephine Mun-Yee Ko, Kwok-Wai Lo, Grace Tin Yun Chung, Kevin Y Yip, Sau-Dan Lee, Johnny Sheung-Him Kwan, Jun Zhang, Tengfei Liu, Jimmy Yu-Wai Chan, Dora Lai-Wan Kwong, Victor Ho-Fun Lee, John Malcolm Nicholls, Pierre Busson, Xuefeng Liu, Alan Kwok Shing Chiang, Kwai Fung Hui, Hin Kwok, Siu Tim Cheung, Yuk Chun Cheung, Chi Keung Chan, Bin Li, Annie Lai-Man Cheung, Pok Man Hau, Yuan Zhou, Chi Man Tsang, Jaap Michiel Middeldorp, Hong-Lin Chen, Maria Li Lung, Sai Wah Tsao
Establishment and characterization of new tumor xenografts and cancer cell lines from EBV-positive nasopharyngeal carcinoma. Nature communications 9 (1) (2018)
Qin Cao, Christine Anyansi, Xihao Hu, Liangliang Xu, Lei Xiong, Wenshu Tang, Myth T S Mok, Chao Cheng, Xiaodan Fan, Mark Gerstein, Alfred S L Cheng, Kevin Y Yip
Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines. Nature genetics 49 (10) (2017)
Le Li, Alden King-Yung Leung, Tsz-Piu Kwok, Yvonne Y Y Lai, Iris K Pang, Grace Tin-Yun Chung, Angel C Y Mak, Annie Poon, Catherine Chu, Menglu Li, Jacob J K Wu, Ernest T Lam, Han Cao, Chin Lin, Justin Sibert, Siu-Ming Yiu, Ming Xiao, Kwok-Wai Lo, Pui-Yan Kwok, Ting-Fung Chan, Kevin Y Yip
OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps. Genome biology 18 (1) (2017)

Kevin Y Yip.css-eqlu8i{font-size:small;padding-left:4px;} (Kevin Yip)

Publication Activity (10 Years)

Top Topics

Top Venues

Kevin Y Yip (Kevin Yip)