Lydia M Contreras (Lydia Contreras)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 29

Top Topics

Escherichia Coli

Top Venues

Applied and environmental microbiology

ACS synthetic biology

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Alyssa M Ekdahl, Tatiana Julien, Sahana Suraj, Judith F Kribelbauer, Saeed Tavazoie, Peter L Freddolino, Lydia M Contreras
Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs. bioRxiv : the preprint server for biology (2024)
Kathleen E Taylor, Lucas G Miller, Lydia M Contreras
RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding. Biochemical Society transactions 52 (1) (2024)
Kathleen E Taylor, Lucas G Miller, Lydia M Contreras
RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding. Biochemical Society transactions (2024)
Antonio Cordova, Brandon Niese, Philip Sweet, Pratik Kamat, Jude M Phillip, Vernita Diane Gordon, Lydia M Contreras
Quantitative morphological analysis of Deinococcus radiodurans elucidates complex dose-dependent nucleoid condensation during recovery from ionizing radiation. Applied and environmental microbiology 90 (7) (2024)
Antonio Cordova, Brandon Niese, Philip Sweet, Pratik Kamat, Jude M Phillip, Vernita Diane Gordon, Lydia M Contreras
Quantitative morphological analysis of Deinococcus radiodurans elucidates complex dose-dependent nucleoid condensation during recovery from ionizing radiation. Applied and environmental microbiology (2024)
Kathleen E Taylor, Lucas G Miller, Lydia M Contreras
RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding. Biochemical Society transactions (2024)
Alejandra Matsuri Rojano-Nisimura, Kobe B Grismore, Josie S Ruzek, Jacqueline L Avila, Lydia M Contreras
The Post-Transcriptional Regulatory Protein CsrA Amplifies Its Targetome through Direct Interactions with Stress-Response Regulatory Hubs: The EvgA and AcnA Cases. Microorganisms 12 (4) (2024)
Antonio Cordova, Brandon Niese, Philip Sweet, Pratik Kamat, Jude M Phillip, Vernita Diane Gordon, Lydia M Contreras
Quantitative morphological analysis of Deinococcus radiodurans elucidates complex dose-dependent nucleoid condensation during recovery from ionizing radiation. Applied and environmental microbiology 90 (7) (2024)
Alyssa M Ekdahl, Tatiana Julien, Sahana Suraj, Judith F Kribelbauer, Saeed Tavazoie, Peter L Freddolino, Lydia M Contreras
Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs. bioRxiv : the preprint server for biology (2024)
Alyssa M Ekdahl, Tatiana Julien, Sahana Suraj, Judith F Kribelbauer, Saeed Tavazoie, Peter L Freddolino, Lydia M Contreras
Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs. bioRxiv : the preprint server for biology (2024)
Philip Sweet, Matthew Burroughs, Sungyeon Jang, Lydia M Contreras
TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs. Microbiology spectrum (2024)
Antonio Cordova, Brandon Niese, Philip Sweet, Pratik Kamat, Jude M Phillip, Vernita Diane Gordon, Lydia M Contreras
Quantitative morphological analysis of Deinococcus radiodurans elucidates complex dose-dependent nucleoid condensation during recovery from ionizing radiation. Applied and environmental microbiology 90 (7) (2024)
Alejandra Matsuri Rojano-Nisimura, Kobe B Grismore, Josie S Ruzek, Jacqueline L Avila, Lydia M Contreras
The Post-Transcriptional Regulatory Protein CsrA Amplifies Its Targetome through Direct Interactions with Stress-Response Regulatory Hubs: The EvgA and AcnA Cases. Microorganisms 12 (4) (2024)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. PNAS nexus 3 (1) (2023)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. PNAS nexus 3 (1) (2023)
Philip Sweet, Jacob Blacutt, Vernita Diane Gordon, Lydia M Contreras
Exposure of Shewanella oneidensis MR-1 to Sublethal Doses of Ionizing Radiation Triggers Short-Term SOS Activation and Longer-Term Prophage Activation. Applied and environmental microbiology (2023)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. bioRxiv : the preprint server for biology (2023)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. PNAS nexus 3 (1) (2023)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. PNAS nexus 3 (1) (2023)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. PNAS nexus 3 (1) (2023)
Sean M Engels, Pratik Kamat, G Stavros Pafilis, Yukang Li, Anshika Agrawal, Daniel J Haller, Jude M Phillip, Lydia M Contreras
Particulate matter composition drives differential molecular and morphological responses in lung epithelial cells. PNAS nexus 3 (1) (2023)
Morgan Chandler, Brittany Johnson, Emil Khisamutdinov, Marina A Dobrovolskaia, Joanna Sztuba-Solinska, Aliasger K Salem, Koen Breyne, Roger Chammas, Nils G Walter, Lydia M Contreras, Peixuan Guo, Kirill A Afonin
The International Society of RNA Nanotechnology and Nanomedicine (ISRNN): The Present and Future of the Burgeoning Field. ACS nano (2021)
Angela Chen, Julia Hernandez-Vargas, Runhua Han, Orlando Cortazar-Martínez, Natalia Gonzalez, Sonia Patel, Benjamin K Keitz, Gabriel Luna-Bárcenas, Lydia M Contreras
Small RNAs as a New Platform for Tuning the Biosynthesis of Silver Nanoparticles for Enhanced Material and Functional Properties. ACS applied materials & interfaces 13 (31) (2021)
Mark W Sherman, Sanjna Sandeep, Lydia M Contreras
The Tryptophan-Induced tnaC Ribosome Stalling Sequence Exposes High Amino Acid Cross-Talk That Can Be Mitigated by Removal of NusB for Higher Orthogonality. ACS synthetic biology 10 (5) (2021)
Juan C Gonzalez-Rivera, Kevin C Baldridge, Dongyu S Wang, Kanan Patel, Jamie C L Chuvalo-Abraham, Lea Hildebrandt Ruiz, Lydia M Contreras
Post-transcriptional air pollution oxidation to the cholesterol biosynthesis pathway promotes pulmonary stress phenotypes. Communications biology 3 (1) (2020)
Alejandra M Rojano-Nisimura, Katie Haning, Justin Janovsky, Kevin A Vasquez, Jeffrey P Thompson, Lydia M Contreras
Codon Selection Affects Recruitment of Ribosome-Associating Factors during Translation. ACS synthetic biology 9 (2) (2019)
Kevin C Baldridge, Manasses Jora, Andre C Maranhao, Matthew M Quick, Balasubrahmanyam Addepalli, Jennifer S Brodbelt, Andrew D Ellington, Patrick A Limbach, Lydia M Contreras
Directed Evolution of Heterologous tRNAs Leads to Reduced Dependence on Post-transcriptional Modifications. ACS synthetic biology 7 (5) (2018)
Abigail N Leistra, Paul Amador, Aishwarya Buvanendiran, Alex Moon-Walker, Lydia M Contreras
Rational Modular RNA Engineering Based on In Vivo Profiling of Structural Accessibility. ACS synthetic biology 6 (12) (2017)
Mia K Mihailovic, Angela Chen, Juan C Gonzalez-Rivera, Lydia M Contreras
Defective Ribonucleoproteins, Mistakes in RNA Processing, and Diseases. Biochemistry 56 (10) (2017)