M Michael Gromiha (Michael M Gromiha)

Scopus Author ID Loop profile Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Topics

Molecular Dynamics Simulations

Machine Learning

Top Venues

Briefings in bioinformatics

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Rahul Nikam, Sherlyn Jemimah, M Michael Gromiha
DeepPPAPredMut: deep ensemble method for predicting the binding affinity change in protein-protein complexes upon mutation. Bioinformatics (Oxford, England) 40 (5) (2024)
N R Siva Shanmugam, A Kulandaisamy, K Veluraja, M Michael Gromiha
CarbDisMut: database on neutral and disease-causing mutations in human carbohydrate-binding proteins. Glycobiology (2024)
Rahul Nikam, Sherlyn Jemimah, M Michael Gromiha
DeepPPAPredMut: deep ensemble method for predicting the binding affinity change in protein-protein complexes upon mutation. Bioinformatics (Oxford, England) 40 (5) (2024)
N R Siva Shanmugam, Kulandaisamy Arulsamy, K Veluraja, M Michael Gromiha
CarbDisMut: database on neutral and disease-causing mutations in human carbohydrate-binding proteins. Glycobiology 34 (4) (2024)
Rahul Nikam, Sherlyn Jemimah, M Michael Gromiha
DeepPPAPredMut: deep ensemble method for predicting the binding affinity change in protein-protein complexes upon mutation. Bioinformatics (Oxford, England) 40 (5) (2024)
Sowmya Ramaswamy Krishnan, Arijit Roy, M Michael Gromiha
Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning. Briefings in bioinformatics 25 (2) (2024)
N R Siva Shanmugam, Kulandaisamy Arulsamy, K Veluraja, M Michael Gromiha
CarbDisMut: database on neutral and disease-causing mutations in human carbohydrate-binding proteins. Glycobiology 34 (4) (2024)
Sowmya Ramaswamy Krishnan, Arijit Roy, M Michael Gromiha
Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning. Briefings in bioinformatics 25 (2) (2024)
Balasubramanian Harihar, Saravanan Konda Mani, M Michael Gromiha, Samuel Selvaraj
Importance of Inter-residue Contacts for Understanding Protein Folding and Unfolding Rates, Remote Homology, and Drug Design. Molecular biotechnology (2024)
Sowmya Ramaswamy Krishnan, Ruben R G Soares, Narayanan Madaboosi, M Michael Gromiha
AutoPLP: A Padlock Probe Design Pipeline for Zoonotic Pathogens. ACS infectious diseases 9 (3) (2023)
Sowmya Ramaswamy Krishnan, Ruben R G Soares, Narayanan Madaboosi, M Michael Gromiha
AutoPLP: A Padlock Probe Design Pipeline for Zoonotic Pathogens. ACS infectious diseases 9 (3) (2023)
Divya Sharma, Tracey Baas, Aitor Nogales, Luis Martinez-Sobrido, M Michael Gromiha
CoDe: a web-based tool for codon deoptimization. Bioinformatics advances 3 (1) (2023)
Divya Sharma, Tracey Baas, Aitor Nogales, Luis Martinez-Sobrido, M Michael Gromiha
CoDe: a web-based tool for codon deoptimization. Bioinformatics advances 3 (1) (2023)
Sankaran Venkatachalam, Nisha Murlidharan, Sowmya Ramaswamy Krishnan, Chandrasekaran Ramakrishnan, Mpho Setshedi, Ramesh Pandian, Debmalya Barh, Sandeep Tiwari, Vasco Ariston de Carvalho Azevedo, Yasien Sayed, M Michael Gromiha
Understanding Drug Resistance of Wild-Type and L38HL Insertion Mutant of HIV-1 C Protease to Saquinavir. Genes 14 (2) (2023)
Fathima Ridha, M Michael Gromiha
MPA-Pred: A machine learning approach for predicting the binding affinity of membrane protein-protein complexes. Proteins (2023)
Jianfeng Sun, Arulsamy Kulandaisamy, Jinlong Ru, M Michael Gromiha, Adam P Cribbs
TMKit: a Python interface for computational analysis of transmembrane proteins. Briefings in bioinformatics (2023)
Sowmya Ramaswamy Krishnan, Ruben R G Soares, Narayanan Madaboosi, M Michael Gromiha
AutoPLP: A Padlock Probe Design Pipeline for Zoonotic Pathogens. ACS infectious diseases (2023)
Nela Pragathi Sneha, S Akila Parvathy Dharshini, Y-H Taguchi, M Michael Gromiha
Investigating Neuron Degeneration in Huntington's Disease Using RNA-Seq Based Transcriptome Study. Genes 14 (9) (2023)
Sankaran Venkatachalam, Nisha Murlidharan, Sowmya Ramaswamy Krishnan, Chandrasekaran Ramakrishnan, Mpho Setshedi, Ramesh Pandian, Debmalya Barh, Sandeep Tiwari, Vasco Ariston de Carvalho Azevedo, Yasien Sayed, M Michael Gromiha
Understanding Drug Resistance of Wild-Type and L38HL Insertion Mutant of HIV-1 C Protease to Saquinavir. Genes 14 (2) (2023)
Sankaran Venkatachalam, Nisha Murlidharan, Sowmya Ramaswamy Krishnan, Chandrasekaran Ramakrishnan, Mpho Setshedi, Ramesh Pandian, Debmalya Barh, Sandeep Tiwari, Vasco Ariston de Carvalho Azevedo, Yasien Sayed, M Michael Gromiha
Understanding Drug Resistance of Wild-Type and L38HL Insertion Mutant of HIV-1 C Protease to Saquinavir. Genes 14 (2) (2023)
Dhanusha Yesudhas, S Akila Parvathy Dharshini, Y-H Taguchi, M Michael Gromiha
Tumor Heterogeneity and Molecular Characteristics of Glioblastoma Revealed by Single-Cell RNA-Seq Data Analysis. Genes 13 (3) (2022)
Nela Pragathi Sneha, S Akila Parvathy Dharshini, Y-H Taguchi, M Michael Gromiha
Integrative Meta-Analysis of Huntington's Disease Transcriptome Landscape. Genes 13 (12) (2022)
Puneet Rawat, Divya Sharma, R Prabakaran, Fathima Ridha, Mugdha Mohkhedkar, Vani Janakiraman, M Michael Gromiha
Ab-CoV: a curated database for binding affinity and neutralization profiles of coronavirus-related antibodies. Bioinformatics (Oxford, England) 38 (16) (2022)
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha
Evaluation of in silico tools for the prediction of protein and peptide aggregation on diverse datasets. Briefings in bioinformatics 22 (6) (2022)
Vishnupriya Kanakaveti, Sakthivel Ramasamy, Rahul Kanumuri, Vaishnavi Balasubramanian, Roshni Saravanan, Inemai Ezhil, Ravishankar Pitani, Ganesh Venkatraman, Suresh Kumar Rayala, M Michael Gromiha
Novel BH4-BCL-2 Domain Antagonists Induce BCL-2-Mediated Apoptosis in Triple-Negative Breast Cancer. Cancers 14 (21) (2022)
Medha Pandey, P Anoosha, Dhanusha Yesudhas, M Michael Gromiha
Identification of potential driver mutations in glioblastoma using machine learning. Briefings in bioinformatics 23 (6) (2022)
Nela Pragathi Sneha, S Akila Parvathy Dharshini, Y-H Taguchi, M Michael Gromiha
Integrative Meta-Analysis of Huntington's Disease Transcriptome Landscape. Genes 13 (12) (2022)
Nela Pragathi Sneha, S Akila Parvathy Dharshini, Y-H Taguchi, M Michael Gromiha
Integrative Meta-Analysis of Huntington's Disease Transcriptome Landscape. Genes 13 (12) (2022)
Nela Pragathi Sneha, S Akila Parvathy Dharshini, Y-H Taguchi, M Michael Gromiha
Integrative Meta-Analysis of Huntington's Disease Transcriptome Landscape. Genes 13 (12) (2022)
Ambuj Srivastava, Dhanusha Yesudhas, Shandar Ahmad, M Michael Gromiha
Deciphering the Role of Residues Involved in Disorder-To-Order Transition Regions in Archaeal tRNA Methyltransferase 5. Genes 12 (3) (2021)
Ingo G H Schmidt-Wolf, Fabian Tobar-Tosse, Tikam Chand Dakal, Hongde Liu, Arijit Biswas, Athira Menon, Anoosha Paruchuri, Panagiostis Katsonis, Olivier Lichtarge, M Michael Gromiha, Michael Ludwig, Ingo G H Schmidt-Wolf, Frank G Holz, Karin U Loeffler, Martina C Herwig-Carl
PPAR-Responsive Elements Enriched with Alu Repeats May Contribute to Distinctive PPARγ-DNMT1 Interactions in the Genome. Cancers 13 (16) (2021)
N R Siva Shanmugam, J Jino Blessy, K Veluraja, M Michael Gromiha
Prediction of protein-carbohydrate complex binding affinity using structural features. Briefings in bioinformatics 22 (4) (2021)
R Prabakaran, Puneet Rawat, A Mary Thangakani, Sandeep Kumar, M Michael Gromiha
Protein aggregation: in silico algorithms and applications. Biophysical reviews 13 (1) (2021)
Divya Sharma, Puneet Rawat, Vani Janakiraman, M Michael Gromiha
Elucidating important structural features for the binding affinity of spike - SARS-CoV-2 neutralizing antibody complexes. Proteins (2021)
R Prabakaran, Puneet Rawat, Nobuaki Yasuo, Masakazu Sekijima, Sandeep Kumar, M Michael Gromiha
Effect of charged mutation on aggregation of a pentapeptide: Insights from molecular dynamics simulations. Proteins (2021)
Kannan Harini, Ambuj Srivastava, Arulsamy Kulandaisamy, M Michael Gromiha
ProNAB: database for binding affinities of protein-nucleic acid complexes and their mutants. Nucleic acids research (2021)
Dhanusha Yesudhas, Ambuj Srivastava, Masakazu Sekijima, M Michael Gromiha
Tackling Covid-19 using disordered-to-order transition of residues in the spike protein upon angiotensin-converting enzyme 2 binding. Proteins 89 (9) (2021)
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha
Erratum to: Evaluation of in silico tools for the prediction of protein and peptide aggregation on diverse datasets. Briefings in bioinformatics (2021)
Puneet Rawat, Sherlyn Jemimah, P K Ponnuswamy, M Michael Gromiha
Why are ACE2 binding coronavirus strains SARS-CoV/SARS-CoV-2 wild and NL63 mild? Proteins 89 (4) (2020)
A Kulandaisamy, S Binny Priya, R Sakthivel, Dmitrij Frishman, M Michael Gromiha
Statistical analysis of disease-causing and neutral mutations in human membrane proteins. Proteins 87 (6) (2019)
Ingo G H Schmidt-Wolf, Arijit Biswas, Hongde Liu, Sagnik Sen, Anoosha Paruchuri, Panagiotis Katsonis, Olivier Lichtarge, Tikam Chand Dakal, Ujjwal Maulik, M Michael Gromiha, Sanghamitra Bandyopadhyay, Michael Ludwig, Frank G Holz, Karin U Loeffler, Martina C Herwig-Carl
Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma. Cancers 11 (10) (2019)
A Kulandaisamy, Jan Zaucha, Ramasamy Sakthivel, Dmitrij Frishman, M Michael Gromiha
Pred-MutHTP: Prediction of disease-causing and neutral mutations in human transmembrane proteins. Human mutation 41 (3) (2019)
Sherlyn Jemimah, M Michael Gromiha
Exploring additivity effects of double mutations on the binding affinity of protein-protein complexes. Proteins 86 (5) (2018)
Ambuj Srivastava, Shandar Ahmad, M Michael Gromiha
Deciphering RNA-Recognition Patterns of Intrinsically Disordered Proteins. International journal of molecular sciences 19 (6) (2018)
R Prabakaran, Dhruv Goel, Sandeep Kumar, M Michael Gromiha
Aggregation prone regions in human proteome: Insights from large-scale data analyses. Proteins 85 (6) (2017)
A Kulandaisamy, Ambuj Srivastava, R Nagarajan, M Michael Gromiha
Dissecting and analyzing key residues in protein-DNA complexes. Journal of molecular recognition : JMR 31 (4) (2017)