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Panagiostis Katsonis (Panagiotis Katsonis)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 27

Top Venues

Human mutation

Research square

Nature communications

Cancers

Baylor College of Medicine

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Baylor College of Medicine

United States

Assistant Professor :: Molecular and Human Genetics

Publications

Wangie Yu, Yunyun Chen, Nagireddy Putluri, Abdullah Osman, Cristian Coarfa, Vasanta Putluri, Abu H M Kamal, Jennifer Kay Asmussen, Panagiostis Katsonis, Jeffrey N Myers, Stephen Y Lai, Wuhao Lu, Clifford C Stephan, Reid T Powell, Faye M Johnson, Heath D Skinner, Jawad Kazi, Kazi Mokim Ahmed, Linghao Hu, Addison Threet, Matthew D Meyer, James A Bankson, Tony Wang, Jack Davis, Kirby R Parker, Madison A Harris, Mokryun L Baek, Gloria V Echeverria, Xiaoli Qi, Jin Wang, Andy I Frederick, Alex J Walsh, Olivier Lichtarge, Mitchell J Frederick, Vlad C Sandulache
Evolution of cisplatin resistance through coordinated metabolic reprogramming of the cellular reductive state. British journal of cancer (2023)
Sarah L Stenton, Melanie O'Leary, Gabrielle T Lemire, Grace E VanNoy, Stephanie DiTroia, Vijay S Ganesh, Emily Groopman, Emily O'Heir, Brian Mangilog, Ikeoluwa Osei-Owusu, Lynn S Pais, Jillian G Serrano, Moriel H Singer-Berk, Ben Weisburd, Michael Wilson, Christina Austin-Tse, Marwa Abdelhakim, Azza Thamer Althagafi, Giulia Babbi, Riccardo Bellazzi, Samuele Bovo, Maria Giulia Carta, Rita Casadio, Pieter-Jan Coenen, Federica De Paoli, Matteo Floris, Manavalan Gajapathy, Robert Hoehndorf, Julius O B Jacobsen, Thomas Joseph, Akash Kamandula, Panagiostis Katsonis, Cyrielle Kint, Olivier Lichtarge, Ivan Limongelli, Yulan Lu, Paolo Magni, Tarun Karthik Kumar Mamidi, Pier Luigi Martelli, Marta Mulargia, Giovanna Nicora, Keith Nykamp, Vikas Pejaver, Yisu Peng, Thi Hong Cam Pham, Maurizio S Podda, Aditya Rao, Ettore Rizzo, Vangala G Saipradeep, Castrense Savojardo, Peter Schols, Yang Shen, Naveen Sivadasan, Damian Smedley, Dorian Soru, Rajgopal Srinivasan, Yuanfei Sun, Uma Sunderam, Wuwei Tan, Naina Tiwari, Xiao Wang, Yaqiong Wang, Amanda Williams, Elizabeth A Worthey, Rujie Yin, Yuning You, Daniel Zeiberg, Susanna Zucca, Constantina Bakolitsa, Steven E Brenner, Stephanie Malia Fullerton, Predrag Radivojac, Heidi L Rehm, Anne H O'Donnell-Luria
Critical assessment of variant prioritization methods for rare disease diagnosis within the Rare Genomes Project. medRxiv : the preprint server for health sciences (2023)
Thomas Bourquard, Kwanghyuk Lee, Ismael Al-Ramahi, Minh Pham, Dillon Shapiro, Yashwanth Lagisetty, Shirin Soleimani, Samantha Mota, Kevin Wilhelm, Maryam Samieinasab, Young Won Kim, Eunna Huh, Jennifer Asmussen, Panagiostis Katsonis, Juan Botas, Olivier Lichtarge
Functional variants identify sex-specific genes and pathways in Alzheimer's Disease. Nature communications 14 (1) (2023)
Thomas Bourquard, Kwanghyuk Lee, Ismael Al-Ramahi, Minh Pham, Dillon Shapiro, Yashwanth Lagisetty, Shirin Soleimani, Samantha Mota, Kevin Wilhelm, Maryam Samieinasab, Young Won Kim, Eunna Huh, Jennifer Asmussen, Panagiostis Katsonis, Juan Botas, Olivier Lichtarge
Functional variants identify sex-specific genes and pathways in Alzheimer's Disease. Nature communications 14 (1) (2023)
Thomas Bourquard, Kwanghyuk Lee, Ismael Al-Ramahi, Minh Pham, Dillon Shapiro, Yashwanth Lagisetty, Shirin Soleimani, Samantha Mota, Kevin Wilhelm, Maryam Samieinasab, Young Won Kim, Eunna Huh, Jennifer Asmussen, Panagiostis Katsonis, Juan Botas, Olivier Lichtarge
Functional variants identify sex-specific genes and pathways in Alzheimer's Disease. Nature communications 14 (1) (2023)
Panagiostis Katsonis, Kevin Wilhelm, Amanda Williams, Olivier Lichtarge
Genome interpretation using in silico predictors of variant impact. Human genetics 141 (10) (2022)
David C Marciano, Chen Wang, Teng-Kuei Hsu, Thomas Bourquard, Benu Atri, Ralf B Nehring, Nicholas S Abel, Elizabeth A Bowling, Taylor J Chen, Pamela D Lurie, Panagiostis Katsonis, Susan M Rosenberg, Christophe Herman, Olivier Lichtarge
Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli. Nature communications 13 (1) (2022)
Chen Wang, Daniel M Konecki, David C Marciano, Harikumar Govindarajan, Amanda M Williams, Brigitta Wastuwidyaningtyas, Thomas Bourquard, Panagiostis Katsonis, Olivier Lichtarge
Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and the greater coronavirus family. Research square (2021)
Ingo G H Schmidt-Wolf, Fabian Tobar-Tosse, Tikam Chand Dakal, Hongde Liu, Arijit Biswas, Athira Menon, Anoosha Paruchuri, Panagiostis Katsonis, Olivier Lichtarge, M Michael Gromiha, Michael Ludwig, Ingo G H Schmidt-Wolf, Frank G Holz, Karin U Loeffler, Martina C Herwig-Carl
PPAR-Responsive Elements Enriched with Alu Repeats May Contribute to Distinctive PPARγ-DNMT1 Interactions in the Genome. Cancers 13 (16) (2021)
Chen Wang, Daniel M Konecki, David C Marciano, Harikumar Govindarajan, Amanda M Williams, Brigitta Wastuwidyaningtyas, Thomas Bourquard, Panagiostis Katsonis, Olivier Lichtarge
Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and the greater coronavirus family. Research square (2021)
Chen Wang, Daniel M Konecki, David C Marciano, Harikumar Govindarajan, Amanda M Williams, Brigitta Wastuwidyaningtyas, Thomas Bourquard, Panagiostis Katsonis, Olivier Lichtarge
Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and the greater coronavirus family. Research square (2021)
Amanda Koire, Panagiostis Katsonis, Young Won Kim, Christie Buchovecky, Stephen J Wilson, Olivier Lichtarge
A method to delineate de novo missense variants across pathways prioritizes genes linked to autism. Science translational medicine 13 (594) (2021)
Wyatt T Clark, Laura Kasak, Constantina Bakolitsa, Zhiqiang Hu, Gaia Andreoletti, Giulia Babbi, Yana Bromberg, Rita Casadio, Roland L Dunbrack, Lukas Folkman, Colby T Ford, David Jones, Panagiostis Katsonis, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Sean D Mooney, Conor Nodzak, Lipika R Pal, Predrag Radivojac, Castrense Savojardo, Xinghua Shi, Yaoqi Zhou, Aneeta Uppal, Qifang Xu, Yizhou Yin, Vikas Pejaver, Meng Wang, Liping Wei, John Moult, Guoying Karen Yu, Steven E Brenner, Jonathan H LeBowitz
Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016. Human mutation 40 (9) (2020)
Chen Wang, Daniel M Konecki, David C Marciano, Harikumar Govindarajan, Amanda M Williams, Brigitta Wastuwidyaningtyas, Thomas Bourquard, Panagiostis Katsonis, Olivier Lichtarge
Identification of evolutionarily stable sites across the SARS-CoV-2 proteome. Research square (2020)
Alexander Miguel Monzon, Marco Carraro, Luigi Chiricosta, Francesco Reggiani, James Han, Kivilcim Ozturk, Yanran Wang, Maximilian Miller, Yana Bromberg, Emidio Capriotti, Castrense Savojardo, Giulia Babbi, Pier L Martelli, Rita Casadio, Panagiostis Katsonis, Olivier Lichtarge, Hannah Carter, Maria Kousi, Nicholas Katsanis, Gaia Andreoletti, John Moult, Steven E Brenner, Carlo Ferrari, Emanuela Leonardi, Silvio C E Tosatto
Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5. Human mutation 40 (9) (2019)
Melissa S Cline, Giulia Babbi, Sandra Bonache, Yue Cao, Rita Casadio, Xavier de la Cruz, Orland Díez, Sara Gutiérrez-Enríquez, Panagiostis Katsonis, Carmen Lai, Olivier Lichtarge, Pier Luigi Martelli, Gilad Mishne, Alejandro Moles-Fernández, Gemma Montalban, Sean D Mooney, Robert O'Conner, Lars Ootes, Selen Özkan, Natalia Padilla, Kymberleigh A Pagel, Vikas Pejaver, Predrag Radivojac, Casandra Riera, Castrense Savojardo, Yang Shen, Yuanfei Sun, Scott Topper, Michael T Parsons, Amanda B Spurdle, David E Goldgar, null null
Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. Human mutation 40 (9) (2019)
Vikas Pejaver, Giulia Babbi, Rita Casadio, Lukas Folkman, Panagiostis Katsonis, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Maximilian Miller, John Moult, Lipika R Pal, Castrense Savojardo, Yizhou Yin, Yaoqi Zhou, Predrag Radivojac, Yana Bromberg
Assessment of methods for predicting the effects of PTEN and TPMT protein variants. Human mutation 40 (9) (2019)
Marco Carraro, Alexander Miguel Monzon, Luigi Chiricosta, Francesco Reggiani, Maria Cristina Aspromonte, Mariagrazia Bellini, Kymberleigh Pagel, Yuxiang Jiang, Predrag Radivojac, Kunal Kundu, Lipika R Pal, Yizhou Yin, Ivan Limongelli, Gaia Andreoletti, John Moult, Stephen J Wilson, Panagiostis Katsonis, Olivier Lichtarge, Jingqi Chen, Yaqiong Wang, Zhiqiang Hu, Steven E Brenner, Carlo Ferrari, Alessandra Murgia, Silvio C E Tosatto, Emanuela Leonardi
Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge. Human mutation 40 (9) (2019)
Alin Voskanian, Panagiostis Katsonis, Olivier Lichtarge, Vikas Pejaver, Predrag Radivojac, Sean D Mooney, Emidio Capriotti, Yana Bromberg, Yanran Wang, Maximilian Miller, Pier Luigi Martelli, Castrense Savojardo, Giulia Babbi, Rita Casadio, Yue Cao, Yuanfei Sun, Yang Shen, Aditi Garg, Debnath Pal, Yao Yu, Chad D Huff, Sean V Tavtigian, Erin Young, Susan L Neuhausen, Elad Ziv, Lipika R Pal, Gaia Andreoletti, Steven E Brenner, Maricel G Kann
Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. Human mutation 40 (9) (2019)
Panagiostis Katsonis, Olivier Lichtarge
CAGI5: Objective performance assessments of predictions based on the Evolutionary Action equation. Human mutation 40 (9) (2019)
Castrense Savojardo, Maria Petrosino, Giulia Babbi, Samuele Bovo, Carles Corbi-Verge, Rita Casadio, Piero Fariselli, Lukas Folkman, Aditi Garg, Mostafa Karimi, Panagiostis Katsonis, Philip M Kim, Olivier Lichtarge, Pier Luigi Martelli, Alessandra Pasquo, Debnath Pal, Yang Shen, Alexey V Strokach, Paola Turina, Yaoqi Zhou, Gaia Andreoletti, Steven E Brenner, Roberta Chiaraluce, Valerio Consalvi, Emidio Capriotti
Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge. Human mutation 40 (9) (2019)
Gregory McInnes, Roxana Daneshjou, Panagiostis Katsonis, Olivier Lichtarge, Rajgopal Srinivasan, Sadhna Rana, Predrag Radivojac, Sean D Mooney, Kymberleigh A Pagel, Moses Stamboulian, Yuxiang Jiang, Emidio Capriotti, Yanran Wang, Yana Bromberg, Samuele Bovo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Lipika R Pal, John Moult, Steven E Brenner, Russ Altman
Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Human mutation 40 (9) (2019)
Jing Zhang, Lisa N Kinch, Qian Cong, Panagiostis Katsonis, Olivier Lichtarge, Castrense Savojardo, Giulia Babbi, Pier Luigi Martelli, Emidio Capriotti, Rita Casadio, Aditi Garg, Debnath Pal, Jochen Weile, Song Sun, Marta Verby, Frederick P Roth, Nick V Grishin
Assessing predictions on fitness effects of missense variants in calmodulin. Human mutation 40 (9) (2019)
Laura Kasak, Constantina Bakolitsa, Zhiqiang Hu, Changhua Yu, Jasper Rine, Dago F Dimster-Denk, Gaurav Pandey, Greet De Baets, Yana Bromberg, Chen Cao, Emidio Capriotti, Rita Casadio, Joost Van Durme, Manuel Giollo, Rachel Karchin, Panagiostis Katsonis, Emanuela Leonardi, Olivier Lichtarge, Pier Luigi Martelli, David Masica, Sean D Mooney, Ayodeji Olatubosun, Predrag Radivojac, Frederic Rousseau, Lipika R Pal, Castrense Savojardo, Joost Schymkowitz, Janita Thusberg, Silvio C E Tosatto, Mauno Vihinen, Jouni Väliaho, Susanna Repo, John Moult, Steven E Brenner, Iddo Friedberg
Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants. Human mutation 40 (9) (2019)
Laura Kasak, Jesse M Hunter, Rupa Udani, Constantina Bakolitsa, Zhiqiang Hu, Aashish N Adhikari, Giulia Babbi, Rita Casadio, Julian Gough, Rafael F Guerrero, Yuxiang Jiang, Thomas Joseph, Panagiostis Katsonis, Sujatha Kotte, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Sean D Mooney, John Moult, Lipika R Pal, Jennifer Poitras, Predrag Radivojac, Aditya Rao, Naveen Sivadasan, Uma Sunderam, V G Saipradeep, Yizhou Yin, Jan Zaucha, Steven E Brenner, M Stephen Meyn
CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases. Human mutation 40 (9) (2019)
Panagiostis Katsonis, Olivier Lichtarge
Objective assessment of the evolutionary action equation for the fitness effect of missense mutations across CAGI-blinded contests. Human mutation 38 (9) (2017)
Marco Carraro, Giovanni Minervini, Manuel Giollo, Yana Bromberg, Emidio Capriotti, Rita Casadio, Roland L Dunbrack, Lisa Elefanti, Pietro Fariselli, Carlo Ferrari, Julian Gough, Panagiostis Katsonis, Emanuela Leonardi, Olivier Lichtarge, Chiara Menin, Pier Luigi Martelli, Abhishek Niroula, Lipika R Pal, Susanna Repo, Maria Chiara Scaini, Mauno Vihinen, Qiong Wei, Qifang Xu, Yuedong Yang, Yizhou Yin, Jan Zaucha, Huiying Zhao, Yaoqi Zhou, Steven E Brenner, John Moult, Silvio C E Tosatto
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI. Human mutation 38 (9) (2017)

Panagiostis Katsonis.css-eqlu8i{font-size:small;padding-left:4px;} (Panagiotis Katsonis)

Publication Activity (10 Years)

Top Topics

Top Venues

Panagiostis Katsonis (Panagiotis Katsonis)