Marc S Halfon (M S Halfon)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 21

Top Topics

Convolutional Neural Network

Gene Expression

Top Venues

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Isabella Schember, William Reid, Geyenna Sterling-Lentsch, Marc S Halfon
Conserved and novel enhancers in the Aedes aegypti single-minded locus recapitulate embryonic ventral midline gene expression. PLoS genetics 20 (4) (2024)
Isabella Schember, William Reid, Geyenna Sterling-Lentsch, Marc S Halfon
Conserved and novel enhancers in the Aedes aegypti single-minded locus recapitulate embryonic ventral midline gene expression. PLoS genetics 20 (4) (2024)
William Reid, Geyenna Sterling-Lentsch, Marc S Halfon
Improved methodology for fixation and preparation of Aedes aegypti embryos. PloS one 19 (5) (2024)
William Reid, Geyenna Sterling-Lentsch, Marc S Halfon
Improved methodology for fixation and preparation of Aedes aegypti embryos. PloS one 19 (5) (2024)
Naomi A Dyer, Eric R Lucas, Sanjay C Nagi, Daniel P McDermott, Jon Haël Brenas, Alistair Miles, Chris S Clarkson, Henry Ddumba Mawejje, Craig Stephen Wilding, Marc S Halfon, Hasiba Asma, Eva Heinz, Martin James Donnelly
Mechanisms of transcriptional regulation in Anopheles gambiae revealed by allele-specific expression. Proceedings. Biological sciences 291 (2031) (2024)
Isabella Schember, William Reid, Geyenna Sterling-Lentsch, Marc S Halfon
Conserved and novel enhancers in the Aedes aegypti single-minded locus recapitulate embryonic ventral midline gene expression. PLoS genetics 20 (4) (2024)
Michael L Weinstein, Chad M Jaenke, Hasiba Asma, Matthew Spangler, Katherine A Kohnen, Claire C Konys, Melissa E Williams, Ashley V Williams, Mark Rebeiz, Marc S Halfon, Thomas Michael Williams
A novel role for trithorax in the gene regulatory network for a rapidly evolving fruit fly pigmentation trait. PLoS genetics 19 (2) (2023)
Michael L Weinstein, Chad M Jaenke, Hasiba Asma, Matthew Spangler, Katherine A Kohnen, Claire C Konys, Melissa E Williams, Ashley V Williams, Mark Rebeiz, Marc S Halfon, Thomas Michael Williams
A novel role for trithorax in the gene regulatory network for a rapidly evolving fruit fly pigmentation trait. PLoS genetics 19 (2) (2023)
Anthony B Garza, Rolando Garcia, Luis M Solis, Marc S Halfon, Hani Z Girgis
EnhancerTracker: Comparing cell-type-specific enhancer activity of DNA sequence triplets via an ensemble of deep convolutional neural networks. bioRxiv : the preprint server for biology (2023)
Michael L Weinstein, Chad M Jaenke, Hasiba Asma, Matthew Spangler, Katherine A Kohnen, Claire C Konys, Melissa E Williams, Ashley V Williams, Mark Rebeiz, Marc S Halfon, Thomas Michael Williams
A novel role for trithorax in the gene regulatory network for a rapidly evolving fruit fly pigmentation trait. PLoS genetics 19 (2) (2023)
Michael L Weinstein, Chad M Jaenke, Hasiba Asma, Matthew Spangler, Katherine A Kohnen, Claire C Konys, Melissa E Williams, Ashley V Williams, Mark Rebeiz, Marc S Halfon, Thomas Michael Williams
A novel role for trithorax in the gene regulatory network for a rapidly evolving fruit fly pigmentation trait. PLoS genetics 19 (2) (2023)
Naomi A Dyer, Eric R Lucas, Sanjay C Nagi, Daniel McDermott, Jon H Brenas, Alistair Miles, Chris S Clarkson, Henry D Mawejje, Craig S Wilding, Marc S Halfon, Hasiba Asma, Eva Heinz, Martin James Donnelly
Mechanisms of transcriptional regulation in Anopheles gambiae revealed by allele specific expression. bioRxiv : the preprint server for biology (2023)
Michael L Weinstein, Chad M Jaenke, Hasiba Asma, Matthew Spangler, Katherine A Kohnen, Claire C Konys, Melissa E Williams, Ashley V Williams, Mark Rebeiz, Marc S Halfon, Thomas Michael Williams
A novel role for trithorax in the gene regulatory network for a rapidly evolving fruit fly pigmentation trait. PLoS genetics 19 (2) (2023)
Isabella Schember, Marc S Halfon
Common Themes and Future Challenges in Understanding Gene Regulatory Network Evolution. Cells 11 (3) (2022)
Soile V E Keränen, Angel Villahoz-Baleta, Andrew E Bruno, Marc S Halfon
REDfly: An Integrated Knowledgebase for Insect Regulatory Genomics. Insects 13 (7) (2022)
Hasiba Asma, Marc S Halfon
Annotating the Insect Regulatory Genome. Insects 12 (7) (2021)
I Schember, Marc S Halfon
Identification of new Anopheles gambiae transcriptional enhancers using a cross-species prediction approach. Insect molecular biology 30 (4) (2021)
Saurabh Sinha, Beryl M Jones, Ian M Traniello, Syed A Bukhari, Marc S Halfon, Hans A Hofmann, Sui Huang, Paul S Katz, Jason Keagy, Vincent J Lynch, Marla B Sokolowski, Lisa J Stubbs, Shayan Tabe-Bordbar, Mariana Federica Wolfner, Gene E Robinson
Behavior-related gene regulatory networks: A new level of organization in the brain. Proceedings of the National Academy of Sciences of the United States of America 117 (38) (2020)
Yoshinori Tomoyasu, Marc S Halfon
How to study enhancers in non-traditional insect models. The Journal of experimental biology 223 (Pt Suppl 1) (2020)
Yiyun Zhou, Sarah E Popadowski, Emily Deutschman, Marc S Halfon
Distinct roles and requirements for Ras pathway signaling in visceral versus somatic muscle founder specification. Development (Cambridge, England) 146 (2) (2019)
Hasiba Asma, Marc S Halfon
Computational enhancer prediction: evaluation and improvements. BMC bioinformatics 20 (1) (2019)