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Mark Akeson

ORCID

Publication Activity (10 Years)

Years Active: 2019-2022
Publications (10 Years): 9

Top Venues

RNA (New York, N.Y.)

Nature methods

Nature biotechnology

Proceedings of the National Academy of Sciences of the United States of America

University of California Santa Cruz

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Santa Cruz

United States

Professor :: Genomics Institute

Publications

Camilla Ugolini, Logan Mulroney, Adrien Leger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson, Andrew D Davidson, Abdulaziz Almuqrin, Roberto Giambruno, Miten Jain, Gianmaria Frigè, Hugh E Olsen, George Tzertzinis, Ira Schildkraut, Madalee G Wulf, Ivan R Corrêa, Laurence M Ettwiller, Nicola Clementi, Massimo Clementi, Nicasio Mancini, Ewan Birney, Mark Akeson, Francesco Nicassio, David A Matthews, Tommaso Leonardi
Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs. Nucleic acids research 50 (6) (2022)
Miten Jain, Robin Abu-Shumays, Hugh E Olsen, Mark Akeson
Advances in nanopore direct RNA sequencing. Nature methods 19 (10) (2022)
Jenny Mai Vo, Logan Mulroney, Jen Quick-Cleveland, Miten Jain, Mark Akeson, Manuel Ares
Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: application to direct RNA sequencing on nanopores. RNA (New York, N.Y.) 27 (12) (2021)
Daniel He, David Wu, Soren Muller, Lin Wang, Parna Saha, Sajad Hamid Ahanger, Siyuan John Liu, Miao Cui, Sung Jun Hong, Miten Jain, Hugh E Olson, Mark Akeson, Joseph F Costello, Aaron Diaz, Daniel A Lim
miRNA-independent function of long noncoding pri-miRNA loci. Proceedings of the National Academy of Sciences of the United States of America 118 (13) (2021)
Sarah Stahl-Rommel, Miten Jain, Hang N Nguyen, Richard R Arnold, Serena M Aunon-Chancellor, Gretta Marie Sharp, Christian L Castro, Kristen K John, Sissel Juul, Daniel J Turner, David Stoddart, Benedict Paten, Mark Akeson, Aaron S Burton, Sarah L Castro-Wallace
Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station Using Nanopore Sequencing. Genes 12 (1) (2021)
Logan Mulroney, Madalee G Wulf, Ira Schildkraut, George Tzertzinis, John Buswell, Miten Jain, Hugh E Olsen, Mark E Diekhans, Ivan R Corrêa, Mark Akeson, Laurence M Ettwiller
Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. RNA (New York, N.Y.) (2021)
Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E Olsen, Colleen Bosworth, Joel Armstrong, Kristof Tigyi, Nicholas W Maurer, Sergey Koren, Fritz J Sedlazeck, Tobias Marschall, Simon Mayes, Vania Costa, Justin M Zook, Kelvin J Liu, Duncan Kilburn, Melanie Sorensen, Katherine M Munson, Mitchell R Vollger, Jean Monlong, Erik Garrison, Evan E Eichler, Sofie Salama, David Haussler, Richard E Green, Mark Akeson, Adam M Phillippy, Karen H Miga, Paolo Carnevali, Miten Jain, Benedict Paten
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. Nature biotechnology 38 (9) (2020)
Andrew M Smith, Miten Jain, Logan Mulroney, Daniel R Garalde, Mark Akeson
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing. PloS one 14 (5) (2019)
Rachael E Workman, Alison D Tang, Paul S Tang, Miten Jain, John R Tyson, Roham Razaghi, Philip C Zuzarte, Timothy Gilpatrick, Alexander Payne, Joshua Quick, Norah Sadowski, Nadine Holmes, Jaqueline Goes de Jesus, Karen L Jones, Cameron M Soulette, Terrance P Snutch, Nicholas Loman, Benedict Paten, Matthew William Loose, Jared T Simpson, Hugh E Olsen, Angela N Brooks, Mark Akeson, Winston Timp
Nanopore native RNA sequencing of a human poly(A) transcriptome. Nature methods 16 (12) (2019)

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Publication Activity (10 Years)

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Mark Akeson