Ewan Birney

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 34

Top Venues

PLoS genetics

Nature communications

Nature

Nucleic acids research

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Cambridge Sep 01 1995 - Dec 31 1999

United Kingdom

PHD :: Genetics

Publications

Ewan Birney
A society-wide conversation is needed about germline genome editing using CRISPR. Nature medicine 30 (1) (2024)
Saul Pierotti, Bettina Welz, Mireia Osuna Lopez, Tomas W Fitzgerald, Joachim Wittbrodt, Ewan Birney
Genotype imputation in F2 crosses of inbred lines. Bioinformatics advances 4 (1) (2024)
Ali Seleit, Ian Brettell, Tomas Fitzgerald, Carina Vibe, Felix Loosli, Joachim Wittbrodt, Kiyoshi Naruse, Ewan Birney, Alexander Aulehla
Modular control of vertebrate axis segmentation in time and space. The EMBO journal (2024)
David Westergaard, Frederik Hytting Jørgensen, Jens Waaben, Alexander Wolfgang Jung, Mette Lademann, Thomas Folkmann Hansen, Jolien Cremers, Sisse Rye Ostrowski, Ole Birger Vesterager Pedersen, null null, Roc Reguant, Isabella Friis Jørgensen, Tomas W Fitzgerald, Ewan Birney, Karina Banasik, Laust Hvas Mortensen, Soren Brunak
Uncovering the heritable components of multimorbidities and disease trajectories using a nationwide cohort. Nature communications 15 (1) (2024)
Saul Pierotti, Bettina Welz, Mireia Osuna Lopez, Tomas W Fitzgerald, Joachim Wittbrodt, Ewan Birney
Genotype imputation in F2 crosses of inbred lines. Bioinformatics advances 4 (1) (2024)
David Westergaard, Frederik Hytting Jørgensen, Jens Waaben, Alexander Wolfgang Jung, Mette Lademann, Thomas Folkmann Hansen, Jolien Cremers, Sisse Rye Ostrowski, Ole Birger Vesterager Pedersen, null null, Roc Reguant, Isabella Friis Jørgensen, Tomas W Fitzgerald, Ewan Birney, Karina Banasik, Laust Hvas Mortensen, Soren Brunak
Uncovering the heritable components of multimorbidities and disease trajectories using a nationwide cohort. Nature communications 15 (1) (2024)
Ewan Birney
A society-wide conversation is needed about germline genome editing using CRISPR. Nature medicine (2024)
Ewan Birney
A society-wide conversation is needed about germline genome editing using CRISPR. Nature medicine 30 (1) (2024)
Agnete Troen Lundgaard, David Westergaard, Timo Röder, Kristoffer Sølvsten Burgdorf, Margit Hørup Larsen, Michael Schwinn, Lise W Thørner, Erik Sørensen, null null, Kaspar René Nielsen, Henrik Hjalgrim, Christian Erikstrup, Bertram D Kjerulff, Lotte Hindhede, Thomas Folkmann Hansen, Mette Nygaard, Ewan Birney, Hreinn Stefansson, Kári Stefánsson, Ole Birger Vesterager Pedersen, Sisse Rye Ostrowski, Ellen Burgess, Henrik Ullum, Laust Hvas Mortensen, Dorte Vistisen, Karina Banasik, Soren Brunak
Longitudinal metabolite and protein trajectories prior to diabetes mellitus diagnosis in Danish blood donors: a nested case-control study. Diabetologia (2024)
Lukas Weilguny, Nicola De Maio, Rory Munro, Charlotte L Manser, Ewan Birney, Matthew William Loose, Nick Goldman
Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design. Nature biotechnology (2023)
Mihaly Varadi, Damian Bertoni, Paulyna Magana, Urmila Paramval, Ivanna Pidruchna, Malarvizhi Radhakrishnan, Maxim Tsenkov, Sreenath Nair, Milot Mirdita, Jingi Yeo, Oleg Kovalevskiy, Kathryn Tunyasuvunakool, Agata Laydon, Augustin Žídek, Hamish Tomlinson, Dhavanthi Hariharan, Josh Abrahamson, Tim Green, John Jumper, Ewan Birney, Martin Steinegger, Demis Hassabis, Sameer Velankar
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences. Nucleic acids research (2023)
Hannah Currant, Tomas W Fitzgerald, Praveen J Patel, Anthony P Khawaja, null null, Andrew R Webster, Omar A Mahroo, Ewan Birney
Sub-cellular level resolution of common genetic variation in the photoreceptor layer identifies continuum between rare disease and common variation. PLoS genetics 19 (2) (2023)
Lukas Weilguny, Nicola De Maio, Rory Munro, Charlotte L Manser, Ewan Birney, Matthew William Loose, Nick Goldman
Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design. Nature biotechnology (2023)
Hannah Currant, Tomas W Fitzgerald, Praveen J Patel, Anthony P Khawaja, null null, Andrew R Webster, Omar A Mahroo, Ewan Birney
Sub-cellular level resolution of common genetic variation in the photoreceptor layer identifies continuum between rare disease and common variation. PLoS genetics 19 (2) (2023)
Hannah Currant, Tomas W Fitzgerald, Praveen J Patel, Anthony P Khawaja, null null, Andrew R Webster, Omar A Mahroo, Ewan Birney
Sub-cellular level resolution of common genetic variation in the photoreceptor layer identifies continuum between rare disease and common variation. PLoS genetics 19 (2) (2023)
Jakob Gierten, Bettina Welz, Tomas Fitzgerald, Thomas Thumberger, Oliver Hummel, Adrien Leger, Philipp Weber, David Hassel, Norbert Hübner, Ewan Birney, Joachim Wittbrodt
Natural genetic variation quantitatively regulates heart-rate and -dimension. bioRxiv : the preprint server for biology (2023)
Hannah Currant, Tomas W Fitzgerald, Praveen J Patel, Anthony P Khawaja, null null, Andrew R Webster, Omar A Mahroo, Ewan Birney
Sub-cellular level resolution of common genetic variation in the photoreceptor layer identifies continuum between rare disease and common variation. PLoS genetics 19 (2) (2023)
Hannah Currant, Tomas W Fitzgerald, Praveen J Patel, Anthony P Khawaja, null null, Andrew R Webster, Omar A Mahroo, Ewan Birney
Sub-cellular level resolution of common genetic variation in the photoreceptor layer identifies continuum between rare disease and common variation. PLoS genetics 19 (2) (2023)
Joannella Morales, Shashikant Pujar, Jane E Loveland, Alex Astashyn, Ruth Bennett, Andrew Berry, Eric Cox, Claire Davidson, Olga Ermolaeva, Catherine M Farrell, Reham Fatima, Laurent Gil, Tamara Goldfarb, Jose Manuel Gonzalez, Diana Haddad, Matthew Hardy, Toby Hunt, John Jackson, Vinita S Joardar, Michael Kay, Vamsi K Kodali, Kelly M McGarvey, Aoife McMahon, Jonathan M Mudge, Daniel N Murphy, Michael R Murphy, Bhanu Rajput, Sanjida H Rangwala, Lillian D Riddick, Françoise Thibaud-Nissen, Glen Threadgold, Anjana R Vatsan, Craig Wallin, David Webb, Paul Flicek, Ewan Birney, Kim D Pruitt, Adam Frankish, Fiona Cunningham, Terence D Murphy
A joint NCBI and EMBL-EBI transcript set for clinical genomics and research. Nature 604 (7905) (2022)
Vincent Michaud, Eulalie Lasseaux, David J Green, Dave T Gerrard, Claudio Plaisant, null null, Tomas W Fitzgerald, Ewan Birney, Benoit Arveiler, Graeme C M Black, Panagiotis I Sergouniotis
The contribution of common regulatory and protein-coding TYR variants to the genetic architecture of albinism. Nature communications 13 (1) (2022)
Camilla Ugolini, Logan Mulroney, Adrien Leger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson, Andrew D Davidson, Abdulaziz Almuqrin, Roberto Giambruno, Miten Jain, Gianmaria Frigè, Hugh E Olsen, George Tzertzinis, Ira Schildkraut, Madalee G Wulf, Ivan R Corrêa, Laurence M Ettwiller, Nicola Clementi, Massimo Clementi, Nicasio Mancini, Ewan Birney, Mark Akeson, Francesco Nicassio, David A Matthews, Tommaso Leonardi
Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs. Nucleic acids research 50 (6) (2022)
Anat Melamed, Tomas W Fitzgerald, Yuchuan Wang, Jian Ma, Ewan Birney, Charles R M Bangham
Selective clonal persistence of human retroviruses in vivo: Radial chromatin organization, integration site, and host transcription. Science advances 8 (17) (2022)
Siddhant Tripathi, Wah Chiu, Lucy M Collinson, Michele C Darrow, Jan Ellenberg, David Grünwald, Jean-Karim Hériché, Andrii Iudin, Gabriel G Martins, Terry Meehan, Kedar Narayan, Ardan Patwardhan, Matthew Robert Geoffrey Russell, Helen R Saibil, Caterina Strambio-De-Castilla, Jason R Swedlow, Christian Tischer, Virginie Uhlmann, Paul Verkade, Mary Barlow, Omer Ali Bayraktar, Ewan Birney, Cesare Catavitello, Christopher J Cawthorne, Stephan Wagner-Conrad, Elizabeth Duke, Perrine Paul-Gilloteaux, Emmanuel M Gustin, Maria Harkiolaki, Pasi Kankaanpää, Thomas Lemberger, Jo McEntyre, Josh Moore, Andrew W Nicholls, Shuichi Onami, Helen Parkinson, Maddy Parsons, Marina Romanchikova, Nicholas Sofroniew, Jim Swoger, Nadine Utz, Lennard M Voortman, Frances Wong, Peijun Zhang, Gerard J Kleywegt, Alvis Brazma
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. Nature methods 18 (12) (2022)
Kathryn Tunyasuvunakool, Jonas Adler, Zachary Wu, Tim Green, Michal Zielinski, Augustin Žídek, Alex Bridgland, Andrew Cowie, Clemens Meyer, Agata Laydon, Sameer Velankar, Gerard J Kleywegt, Alex Bateman, Richard Evans, Alexander Pritzel, Michael Figurnov, Olaf Ronneberger, Russ Bates, Simon A A Kohl, Anna Potapenko, Andrew J Ballard, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Ellen Clancy, David Reiman, Stig Petersen, Andrew W Senior, Koray Kavukcuoglu, Ewan Birney, Pushmeet Kohli, John M Jumper, Demis Hassabis
Highly accurate protein structure prediction for the human proteome. Nature 596 (7873) (2021)
Mihaly Varadi, Stephen Anyango, Mandar S Deshpande, Sreenath Nair, Cindy Natassia, Galabina Yordanova, David Yuan, Oana Stroe, Gemma Wood, Agata Laydon, Augustin Žídek, Tim Green, Kathryn Tunyasuvunakool, Stig Petersen, John Jumper, Ellen Clancy, Richard Green, Ankur Vora, Mira Lutfi, Michael Figurnov, Andrew Cowie, Nicole Hobbs, Pushmeet Kohli, Gerard Kleywegt, Ewan Birney, Demis Hassabis, Sameer Velankar
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic acids research (2021)
Harald S Vöhringer, Theo Sanderson, Matthew Sinnott, Nicola De Maio, Thuy Nguyen, Richard J Goater, Frank Schwach, Ian Harrison, Joel Hellewell, Cristina V Ariani, Sonia Gonçalves, David K Jackson, Ian Johnston, Alexander W Jung, Callum Saint, John Sillitoe, Maria Suciu, Nick Goldman, Jasmina Panovska-Griffiths, null null, null null, Ewan Birney, Erik M Volz, Sebastian Funk, Dominic P Kwiatkowski, Meera Chand, Iñigo Martincorena, Jeffrey C Barrett, Moritz Gerstung
Genomic reconstruction of the SARS-CoV-2 epidemic in England. Nature (2021)
Puya Gharahkhani, Eric Jorgensen, Pirro G Hysi, Anthony P Khawaja, Sarah Pendergrass, Xikun Han, Jue-Sheng Ong, Alex W Hewitt, Ayellet V Segrè, John M Rouhana, Andrew R Hamel, Robert P Igo, Helene Choquet, Ayub Qassim, Navya Shilpa Josyula, Jessica N Cooke Bailey, Pieter W M Bonnemaijer, Adriana I Iglesias, Owen M Siggs, Terri L Young, Veronique Vitart, Alberta A H J Thiadens, Juha Karjalainen, Steffen Uebe, Ronald B Melles, K Saidas Nair, Robert N Luben, Mark J Simcoe, Nishani Amersinghe, Angela Jane Cree, Rene Hohn, Alicia Poplawski, Li Jia Chen, Shi Song Rong, Tin Aung, Eranga Nishanthie Vithana, null null, null null, null null, null null, null null, null null, null null, Gen Tamiya, Yukihiro Shiga, Masayuki Yamamoto, Toru Nakazawa, Hannah Currant, Ewan Birney, Xin Wang, Adam Auton, Michelle K Lupton, Nicholas G Martin, Adeyinka Ashaye, Olusola Oluyinka Olawoye, Susan Eileen Isabella Williams, Stephen Akafo, Michelle Ramsay, Kazuki Hashimoto, Yoichiro Kamatani, Masato Akiyama, Yukihide Momozawa, Paul J Foster, Peng Tee Khaw, James E Morgan, Nicholas G Strouthidis, Peter Kraft, Jae Hee Kang, Chi Pui Pang, Francesca Pasutto, Paul Mitchell, Andrew John Lotery, Aarno Palotie, Cornelia van Duijn, Jonathan L Haines, Christopher J Hammond, Louis R Pasquale, Caroline C W Klaver, Michael Hauser, Chiea Chuen Khor, David A Mackey, Michiaki Kubo, Ching-Yu Cheng, Jamie E Craig, Stuart Macgregor, Janey L Wiggs
Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries. Nature communications 12 (1) (2021)
Hannah Currant, Pirro G Hysi, Tomas W Fitzgerald, Puya Gharahkhani, Pieter W M Bonnemaijer, Anne Senabouth, Alex W Hewitt, null null, null null, Denize Atan, Tin Aung, Jason Charng, Helene Choquet, Jamie Craig, Peng T Khaw, Caroline C W Klaver, Michiaki Kubo, Jue-Sheng Ong, Louis R Pasquale, Charles A Reisman, Maciej S Daniszewski, Joseph E Powell, Alice Pébay, Mark J Simcoe, Alberta A H J Thiadens, Cornelia M Van Duijn, Seyhan Yazar, Eric Jorgensen, Stuart Macgregor, Christopher J Hammond, David A Mackey, Janey L Wiggs, Paul J Foster, Praveen J Patel, Ewan Birney, Anthony P Khawaja
Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images. PLoS genetics 17 (5) (2021)
Gaia Cantelli, Alex Bateman, Cath Brooksbank, Anton I Petrov, Rahuman S Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna McEntyre
The European Bioinformatics Institute (EMBL-EBI) in 2021. Nucleic acids research (2021)
Adrien Leger, Paulo P Amaral, Luca Pandolfini, Charlotte Capitanchik, Federica Capraro, Valentina Miano, Valentina Migliori, Patrick Toolan-Kerr, Theodora Sideri, Anton J Enright, Konstantinos Tzelepis, Folkert Jacobus van Werven, Nicholas M Luscombe, Isaia Barbieri, Jernej Ule, Tomas W Fitzgerald, Ewan Birney, Tommaso Leonardi, Tony Kouzarides
RNA modifications detection by comparative Nanopore direct RNA sequencing. Nature communications 12 (1) (2021)
Hannah V Meyer, Timothy J W Dawes, Marta Serrani, Wenjia Bai, Paweł Tokarczuk, Jiashen Cai, Antonio de Marvao, Albert Henry, R Thomas Lumbers, Jakob Gierten, Thomas Thumberger, Joachim Wittbrodt, James Simon Ware, Daniel Ruckert, Paul M Matthews, Sanjay K Prasad, Maria L Costantino, Stuart A Cook, Ewan Birney, Declan P O'Regan
Genetic and functional insights into the fractal structure of the heart. Nature 584 (7822) (2020)
Valentina Iotchkova, Graham R S Ritchie, Matthias Geihs, Sandro Morganella, Josine L Min, Klaudia Walter, Nicholas John Timpson, null null, Ian Dunham, Ewan Birney, Nicole Soranzo
GARFIELD classifies disease-relevant genomic features through integration of functional annotations with association signals. Nature genetics 51 (2) (2019)
Anat Melamed, Hiroko Yaguchi, Michi Miura, Aviva Witkover, Tomas W Fitzgerald, Ewan Birney, Charles R M Bangham
The human leukemia virus HTLV-1 alters the structure and transcription of host chromatin in cis. eLife 7 (2018)
Ewan Birney
The Mighty Fruit Fly Moves into Outbred Genetics. PLoS genetics 12 (11) (2016)

Ewan Birney.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Ewan Birney