Siyuan John Liu (S John Liu, S John Liu)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 35

Top Topics

Dna Methylation

Gene Expression

Top Venues

Nature communications

Nature genetics

Research square

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics 56 (6) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics 56 (6) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics 56 (6) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics 56 (6) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics 56 (6) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Charlotte D Eaton, Lauro Avalos, Siyuan John Liu, Zhenhong Chen, Naomi Zakimi, Tim J Casey-Clyde, Paola Bisignano, Calixto-Hope G Lucas, Erica Stevenson, Abrar Choudhury, Harish N Vasudevan, Stephen T Magill, Jacob S Young, Nevan J Krogan, Javier E Villanueva-Meyer, Danielle L Swaney, David R Raleigh
Merlin S13 phosphorylation regulates meningioma Wnt signaling and magnetic resonance imaging features. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics 56 (6) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Siyuan John Liu, Tim J Casey-Clyde, Nam Woo Cho, Jason Swinderman, Melike Pekmezci, Mark C Dougherty, Kyla Foster, William C Chen, Javier E Villanueva-Meyer, Danielle L Swaney, Harish N Vasudevan, Abrar Choudhury, Joanna Pak, Jonathan D Breshears, Ursula E Lang, Charlotte D Eaton, Kamir J Hiam-Galvez, Erica Stevenson, Kuei-Ho Chen, Brian V Lien, David Wu, Steve E Braunstein, Penny K Sneed, Stephen T Magill, Daniel Lim, Michael W McDermott, Mitchel S Berger, Arie Perry, Nevan J Krogan, Marlan R Hansen, Matthew H Spitzer, Luke A Gilbert, Philip V Theodosopoulos, David R Raleigh
Epigenetic reprogramming shapes the cellular landscape of schwannoma. Nature communications 15 (1) (2024)
Harish N Vasudevan, Emily Payne, Cyrille L Delley, Siyuan John Liu, Kanish Mirchia, Matthew J Sale, Sydney Lastella, Maria Sacconi Nunez, Calixto-Hope G Lucas, Charlotte D Eaton, Tim Casey-Clyde, Stephen T Magill, William C Chen, Steve E Braunstein, Arie Perry, Line Jacques, Alyssa T Reddy, Melike Pekmezci, Adam R Abate, Frank McCormick, David R Raleigh
Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nature communications 15 (1) (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William C Chen, Naomi Zakimi, Kyla Foster, Charlotte D Eaton, Martha A Cady, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen T Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish N Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution. Nature genetics (2024)
Calixto-Hope G Lucas, Kanish Mirchia, Kyounghee Seo, Hinda Najem, William Chen, Naomi Zakimi, Abrar Choudhury, Siyuan John Liu, Joanna J Phillips, Stephen Magill, Craig M Horbinski, David A Solomon, Arie Perry, Harish Vasudevan, Amy B Heimberger, David R Raleigh
Spatial genomic, biochemical, and cellular mechanisms drive meningioma heterogeneity and evolution. Research square (2023)
Abrar Choudhury, Stephen T Magill, Charlotte D Eaton, Briana C Prager, William C Chen, Martha A Cady, Kyounghee Seo, Calixto-Hope G Lucas, Tim J Casey-Clyde, Harish N Vasudevan, Siyuan John Liu, Javier E Villanueva-Meyer, Tai-Chung Lam, Jenny Kan-Suen Pu, Lai-Fung Li, Gilberto Ka-Kit Leung, Danielle L Swaney, Michael Y Zhang, Jason W Chan, Zhixin Qiu, Michael V Martin, Matthew S Susko, Steve E Braunstein, Nancy Ann Oberheim Bush, Jessica D Schulte, Nicholas Butowski, Penny K Sneed, Mitchel S Berger, Nevan J Krogan, Arie Perry, Joanna J Phillips, David A Solomon, Joseph F Costello, Michael W McDermott, Jeremy N Rich, David R Raleigh
Meningioma DNA methylation groups identify biological drivers and therapeutic vulnerabilities. Nature genetics 54 (5) (2022)
Siyuan John Liu, Ha X Dang, Daniel A Lim, Felix Y Feng, Christopher A Maher
Long noncoding RNAs in cancer metastasis. Nature reviews. Cancer 21 (7) (2021)
Daniel He, David Wu, Soren Muller, Lin Wang, Parna Saha, Sajad Hamid Ahanger, Siyuan John Liu, Miao Cui, Sung Jun Hong, Miten Jain, Hugh E Olson, Mark Akeson, Joseph F Costello, Aaron Diaz, Daniel A Lim
miRNA-independent function of long noncoding pri-miRNA loci. Proceedings of the National Academy of Sciences of the United States of America 118 (13) (2021)
Stephen T Magill, Harish N Vasudevan, Kyounghee Seo, Javier E Villanueva-Meyer, Abrar Choudhury, Siyuan John Liu, Melike Pekmezci, Sarah Findakly, Stephanie Hilz, Sydney Lastella, Benjamin Demaree, Steve E Braunstein, Nancy Ann Oberheim Bush, Manish K Aghi, Philip V Theodosopoulos, Penny K Sneed, Adam R Abate, Mitchel S Berger, Michael W McDermott, Daniel A Lim, Erik M Ullian, Joseph F Costello, David R Raleigh
Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma. Nature communications 11 (1) (2020)
Siyuan John Liu, Daniel A Lim
Modulating the expression of long non-coding RNAs for functional studies. EMBO reports 19 (12) (2018)
Tomasz Jan Nowakowski, Aparna Bhaduri, Alex Aaron Pollen, Beatriz Alvarado, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Maximilian Haeussler, Carmen Sandoval-Espinosa, Siyuan John Liu, Dmitri Velmeshev, Johain Ryad Ounadjela, Joe Shuga, Xiaohui Wang, Daniel A Lim, Jay A West, Anne A Leyrat, W James Kent, Arnold R Kriegstein
Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science (New York, N.Y.) 358 (6368) (2018)