Markus W Covert (Markus Covert)

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 12

Top Topics

Top Venues

bioRxiv : the preprint server for biology

PLoS computational biology

Science signaling

NPJ systems biology and applications

This page only lists publications with an associated author ORCID identifier.

Publications

Christopher J Skalnik, Sean Y Cheah, Mica Y Yang, Mattheus B Wolff, Ryan K Spangler, Lee Talman, Jerry H Morrison, Shayn M Peirce, Eran Agmon, Markus W Covert
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. PLoS computational biology 19 (6) (2023)
John W Hickey, Eran Agmon, Nina Horowitz, Matthew Lamore, John Sunwoo, Markus W Covert, Garry P Nolan
Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy. bioRxiv : the preprint server for biology (2023)
John W Hickey, Eran Agmon, Nina Horowitz, Matthew Lamore, John Sunwoo, Markus W Covert, Garry P Nolan
Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy. bioRxiv : the preprint server for biology (2023)
John W Hickey, Eran Agmon, Nina Horowitz, Matthew Lamore, John Sunwoo, Markus W Covert, Garry P Nolan
Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy. bioRxiv : the preprint server for biology (2023)
Heejo Choi, Markus W Covert
Whole-cell modeling of E. coli confirms that in vitro tRNA aminoacylation measurements are insufficient to support cell growth and predicts a positive feedback mechanism regulating arginine biosynthesis. Nucleic acids research (2023)
John W Hickey, Eran Agmon, Nina Horowitz, Matthew Lamore, John Sunwoo, Markus W Covert, Garry P Nolan
Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy. bioRxiv : the preprint server for biology (2023)
Travis A Ahn-Horst, Luis Santiago Mille, Gwanggyu Sun, Jerry H Morrison, Markus W Covert
An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control. NPJ systems biology and applications 8 (1) (2022)
Eran Agmon, Ryan K Spangler, Christopher J Skalnik, William Poole, Shayn M Peirce, Jerry H Morrison, Markus W Covert
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinformatics (Oxford, England) 38 (7) (2022)
Derek N Macklin, Travis A Ahn-Horst, Heejo Choi, Nicholas A Ruggero, Javier Carrera, John C Mason, Gwanggyu Sun, Eran Agmon, Mialy M DeFelice, Inbal Maayan, Keara Lane, Ryan K Spangler, Taryn E Gillies, Morgan L Paull, Sajia Akhter, Samuel R Bray, Daniel S Weaver, Ingrid M Keseler, Peter D Karp, Jerry H Morrison, Markus W Covert
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation. Science (New York, N.Y.) 369 (6502) (2020)
Hee Won Yang, Steven D Cappell, Ariel Jaimovich, Chad Liu, Mingyu Chung, Leighton H Daigh, Lindsey R Pack, Yilin Fan, Sergi Regot, Markus W Covert, Tobias Meyer
Stress-mediated exit to quiescence restricted by increasing persistence in CDK4/6 activation. eLife 9 (2020)
Mialy M DeFelice, Helen R Clark, Jacob J Hughey, Inbal Maayan, Takamasa Kudo, Miriam V Gutschow, Markus W Covert, Sergi Regot
NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop. Science signaling 12 (579) (2019)
David A Van Valen, Takamasa Kudo, Keara M Lane, Derek N Macklin, Nicolas T Quach, Mialy M DeFelice, Inbal Maayan, Yu Tanouchi, Euan A Ashley, Markus W Covert
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. PLoS computational biology 12 (11) (2016)