Eran Agmon

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 8

Top Topics

Escherichia Coli

Network Analysis

Electronic Health Record

Top Venues

bioRxiv : the preprint server for biology

Entropy (Basel, Switzerland)

Science (New York, N.Y.)

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Yasir Suhail, Yamin Liu, Wenqiang Du, Junaid Afzal, Xihua Qiu, Amina Atiq, Paola Vera-Licona, Eran Agmon, Kshitiz Kshitiz
Oscillatory Hypoxia Induced Unfolded Protein Folding Response Gene Expression Predicts Low Survival in Human Breast Cancer Patients. bioRxiv : the preprint server for biology (2024)
Yasir Suhail, Yamin Liu, Wenqiang Du, Junaid Afzal, Xihua Qiu, Amina Atiq, Paola Vera-Licona, Eran Agmon, Kshitiz Kshitiz
Oscillatory Hypoxia Induced Unfolded Protein Folding Response Gene Expression Predicts Low Survival in Human Breast Cancer Patients. bioRxiv : the preprint server for biology (2024)
Eran Agmon
Prelude to a Compositional Systems Biology. ArXiv (2024)
Christopher J Skalnik, Sean Y Cheah, Mica Y Yang, Mattheus B Wolff, Ryan K Spangler, Lee Talman, Jerry H Morrison, Shayn M Peirce, Eran Agmon, Markus W Covert
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. PLoS computational biology 19 (6) (2023)
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S Andrews, Azraf Anwar, Moritz Emanuel Beber, Frank T Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G Bard Ermentrout, James R Faeder, Andrew P Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H Gennari, Padraig Gleeson, Anne Goelzer, Zachary B Haiman, Jan Hasenauer, Joseph L Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C Ison, Diego Jahn, Henry V Jakubowski, Ryann Jordan, Matúš Kalaš, Matthias König, Wolfram Liebermeister, Rahuman S Malik Sheriff, Synchon Mandal, Robert A McDougal, J Kyle Medley, Pedro Mendes, Robert Müller, Chris John Myers, Aurélien Naldi, Tung V N Nguyen, David P Nickerson, Brett G Olivier, Drashti Patoliya, Loïc Paulevé, Linda R Petzold, Ankita Priya, Anand K Rampadarath, Johann M Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L Snoep, Hugh Sorby, Ryan K Spangler, Jörn Starruß, Payton J Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P Goldberg, James C Schaff, Michael L Blinov, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic acids research (2022)
Eran Agmon, Ryan K Spangler, Christopher J Skalnik, William Poole, Shayn M Peirce, Jerry H Morrison, Markus W Covert
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinformatics (Oxford, England) 38 (7) (2022)
Derek N Macklin, Travis A Ahn-Horst, Heejo Choi, Nicholas A Ruggero, Javier Carrera, John C Mason, Gwanggyu Sun, Eran Agmon, Mialy M DeFelice, Inbal Maayan, Keara Lane, Ryan K Spangler, Taryn E Gillies, Morgan L Paull, Sajia Akhter, Samuel R Bray, Daniel S Weaver, Ingrid M Keseler, Peter D Karp, Jerry H Morrison, Markus W Covert
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation. Science (New York, N.Y.) 369 (6502) (2020)
Eran Agmon, Ryan K Spangler
A Multi-Scale Approach to Modeling E. coli Chemotaxis. Entropy (Basel, Switzerland) 22 (10) (2020)