Mary J Dunlop

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 49

Top Topics

Escherichia Coli

Gene Expression

Top Venues

Nature communications

ACS synthetic biology

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Nathan Tague, Cristian Coriano-Ortiz, Michael B Sheets, Mary J Dunlop
Light-inducible protein degradation in E. coli with the LOVdeg tag. eLife 12 (2024)
Nathan Tague, Cristian Coriano-Ortiz, Michael B Sheets, Mary J Dunlop
Light-inducible protein degradation in E. coli with the LOVdeg tag. eLife 12 (2024)
Jean-Baptiste Lugagne, Caroline M Blassick, Mary J Dunlop
Deep model predictive control of gene expression in thousands of single cells. Nature communications 15 (1) (2024)
Virgile Andreani, Eric J South, Mary J Dunlop
Generating information-dense promoter sequences with optimal string packing. PLoS computational biology 20 (7) (2024)
Nathan Tague, Cristian Coriano-Ortiz, Michael B Sheets, Mary J Dunlop
Light-inducible protein degradation in E. coli with the LOVdeg tag. eLife 12 (2024)
Nathan Tague, Cristian Coriano-Ortiz, Michael B Sheets, Mary J Dunlop
Light-inducible protein degradation in E. coli with the LOVdeg tag. eLife 12 (2024)
Jean-Baptiste Lugagne, Caroline M Blassick, Mary J Dunlop
Deep model predictive control of gene expression in thousands of single cells. Nature communications 15 (1) (2024)
Nathan Tague, Cristian Coriano-Ortiz, Michael B Sheets, Mary J Dunlop
Light-inducible protein degradation in E. coli with the LOVdeg tag. eLife 12 (2024)
Jean-Baptiste Lugagne, Caroline M Blassick, Mary J Dunlop
Deep model predictive control of gene expression in thousands of single cells. Nature communications 15 (1) (2024)
Karmella A Haynes, Lauren B Andrews, Chase L Beisel, James Chappell, Christian E Cuba Samaniego, John E Dueber, Mary J Dunlop, Elisa Franco, Julius B Lucks, Vincent Noireaux, David F Savage, Pamela A Silver, Michael J Smanski, Eric M Young
Ten Years of the Synthetic Biology Summer Course at Cold Spring Harbor Laboratory. ACS synthetic biology 13 (9) (2024)
Virgile Andreani, Eric J South, Mary J Dunlop
Generating information-dense promoter sequences with optimal string packing. PLoS computational biology 20 (7) (2024)
Jean-Baptiste Lugagne, Caroline M Blassick, Mary J Dunlop
Deep model predictive control of gene expression in thousands of single cells. Nature communications 15 (1) (2024)
Virgile Andreani, Eric J South, Mary J Dunlop
Generating information-dense promoter sequences with optimal string packing. PLoS computational biology 20 (7) (2024)
Elliot P Tague, Jeffrey B McMahan, Nathan Tague, Mary J Dunlop, John T Ngo
Controlled protein activities with viral proteases, antiviral peptides, and antiviral drugs. bioRxiv : the preprint server for biology (2023)
Nathan Tague, Cristian Coriano-Ortiz, Michael B Sheets, Mary J Dunlop
Light inducible protein degradation in E. coli with LOVtag. bioRxiv : the preprint server for biology (2023)
Michael B Sheets, Nathan Tague, Mary J Dunlop
An optogenetic toolkit for light-inducible antibiotic resistance. Nature communications 14 (1) (2023)
Michael B Sheets, Nathan Tague, Mary J Dunlop
An optogenetic toolkit for light-inducible antibiotic resistance. Nature communications 14 (1) (2023)
Nathan Tague, Virgile Andreani, Yunfan Fan, Winston Timp, Mary J Dunlop
Comprehensive Screening of a Light-Inducible Split Cre Recombinase with Domain Insertion Profiling. ACS synthetic biology (2023)
Nathan Tague, Virgile Andreani, Yunfan Fan, Winston Timp, Mary J Dunlop
Comprehensive screening of a light-inducible split Cre recombinase with domain insertion profiling. bioRxiv : the preprint server for biology (2023)
Elliot P Tague, Jeffrey B McMahan, Nathan Tague, Mary J Dunlop, John T Ngo
Controlled Protein Activities with Viral Proteases, Antiviral Peptides, and Antiviral Drugs. ACS chemical biology 18 (5) (2023)
Nathan Tague, Haonan Lin, Jean-Baptiste Lugagne, Owen M O'Connor, Deeya Burman, Wilson W Wong, Ji-Xin Cheng, Mary J Dunlop
Longitudinal Single-Cell Imaging of Engineered Strains with Stimulated Raman Scattering to Characterize Heterogeneity in Fatty Acid Production. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2023)
Heidi E Klumpe, Jean-Baptiste Lugagne, Ahmad S Khalil, Mary J Dunlop
Deep Neural Networks for Predicting Single-Cell Responses and Probability Landscapes. ACS synthetic biology (2023)
Elliot P Tague, Jeffrey B McMahan, Nathan Tague, Mary J Dunlop, John T Ngo
Controlled Protein Activities with Viral Proteases, Antiviral Peptides, and Antiviral Drugs. ACS chemical biology 18 (5) (2023)
Virgile Andreani, Eric J South, Mary J Dunlop
Generating information-dense nucleotide sequences with optimal string packing. bioRxiv : the preprint server for biology (2023)
Elliot P Tague, Jeffrey B McMahan, Nathan Tague, Mary J Dunlop, John T Ngo
Controlled Protein Activities with Viral Proteases, Antiviral Peptides, and Antiviral Drugs. ACS chemical biology (2023)
Michael B Sheets, Nathan Tague, Mary J Dunlop
An optogenetic toolkit for light-inducible antibiotic resistance. Nature communications 14 (1) (2023)
Michael B Sheets, Nathan Tague, Mary J Dunlop
An optogenetic toolkit for light-inducible antibiotic resistance. Nature communications 14 (1) (2023)
Elliot P Tague, Jeffrey B McMahan, Nathan Tague, Mary J Dunlop, John T Ngo
Controlled Protein Activities with Viral Proteases, Antiviral Peptides, and Antiviral Drugs. ACS chemical biology 18 (5) (2023)
Nadia M V Sampaio, Caroline M Blassick, Virgile Andreani, Jean-Baptiste Lugagne, Mary J Dunlop
Dynamic gene expression and growth underlie cell-to-cell heterogeneity in Escherichia coli stress response. Proceedings of the National Academy of Sciences of the United States of America 119 (14) (2022)
Jing Zhang, Jonghyeon Shin, Nathan Tague, Haonan Lin, Meng Zhang, Xiaowei Ge, Wilson Wong, Mary J Dunlop, Ji-Xin Cheng
Visualization of a Limonene Synthesis Metabolon Inside Living Bacteria by Hyperspectral SRS Microscopy. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 9 (32) (2022)
William A V Beardall, Guy-Bart Stan, Mary J Dunlop
Deep Learning Concepts and Applications for Synthetic Biology. GEN biotechnology 1 (4) (2022)
Jonghyeon Shin, Eric J South, Mary J Dunlop
Transcriptional Tuning of Mevalonate Pathway Enzymes to Identify the Impact on Limonene Production in Escherichia coli . ACS omega 7 (22) (2022)
Owen M O'Connor, Razan N Alnahhas, Jean-Baptiste Lugagne, Mary J Dunlop
DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics. PLoS computational biology 18 (1) (2022)
Haonan Lin, Hyeon Jeong Lee, Nathan Tague, Jean-Baptiste Lugagne, Cheng Zong, Fengyuan Deng, Jonghyeon Shin, Lei Tian, Wilson W Wong, Mary J Dunlop, Ji-Xin Cheng
Microsecond fingerprint stimulated Raman spectroscopic imaging by ultrafast tuning and spatial-spectral learning. Nature communications 12 (1) (2021)
Michael B Sheets, Wilson W Wong, Mary J Dunlop
Light-Inducible Recombinases for Bacterial Optogenetics. ACS synthetic biology 9 (2) (2020)
Jean-Baptiste Lugagne, Haonan Lin, Mary J Dunlop
DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning. PLoS computational biology 16 (4) (2020)
Ariel M Langevin, Imane El Meouche, Mary J Dunlop
Mapping the Role of AcrAB-TolC Efflux Pumps in the Evolution of Antibiotic Resistance Reveals Near-MIC Treatments Facilitate Resistance Acquisition. mSphere 5 (6) (2020)
Michael B Sheets, Wilson W Wong, Mary J Dunlop
Correction to Light-Inducible Recombinases for Bacterial Optogenetics. ACS synthetic biology 9 (10) (2020)
Nicholas A Rossi, Imane El Meouche, Mary J Dunlop
Forecasting cell fate during antibiotic exposure using stochastic gene expression. Communications biology 2 (2019)
Alexandra Westbrook, Xun Tang, Ryan Marshall, Colin S Maxwell, James Chappell, Deepak K Agrawal, Mary J Dunlop, Vincent Noireaux, Chase L Beisel, Julius B Lucks, Elisa Franco
Distinct timescales of RNA regulators enable the construction of a genetic pulse generator. Biotechnology and bioengineering 116 (5) (2019)
Nicholas A Rossi, Imane El Meouche, Mary J Dunlop
Erratum: Author Correction: Forecasting cell fate during antibiotic exposure using stochastic gene expression. Communications biology 2 (2019)
Nicholas A Rossi, Imane El Meouche, Mary J Dunlop
Author Correction: Forecasting cell fate during antibiotic exposure using stochastic gene expression. Communications biology 2 (1) (2019)
Imane El Meouche, Mary J Dunlop
Heterogeneity in efflux pump expression predisposes antibiotic-resistant cells to mutation. Science (New York, N.Y.) 362 (6415) (2019)
Nicholas A Rossi, Thierry Mora, Aleksandra M Walczak, Mary J Dunlop
Active degradation of MarA controls coordination of its downstream targets. PLoS computational biology 14 (12) (2018)
Xi Wen, Ariel M Langevin, Mary J Dunlop
Antibiotic export by efflux pumps affects growth of neighboring bacteria. Scientific reports 8 (1) (2018)
Deepak K Agrawal, Xun Tang, Alexandra Westbrook, Ryan Marshall, Colin S Maxwell, Julius B Lucks, Vincent Noireaux, Chase L Beisel, Mary J Dunlop, Elisa Franco
Mathematical Modeling of RNA-Based Architectures for Closed Loop Control of Gene Expression. ACS synthetic biology 7 (5) (2018)
Timothy A Tomko, Mary J Dunlop
Expression of Heterologous Sigma Factor Expands the Searchable Space for Biofuel Tolerance Mechanisms. ACS synthetic biology 6 (7) (2017)
Nicholas A Rossi, Mary J Dunlop
Customized Regulation of Diverse Stress Response Genes by the Multiple Antibiotic Resistance Activator MarA. PLoS computational biology 13 (1) (2017)
Yik Siu, Jesse Fenno, Jessica M Lindle, Mary J Dunlop
Design and Selection of a Synthetic Feedback Loop for Optimizing Biofuel Tolerance. ACS synthetic biology 7 (1) (2017)