Matteo Benelli

Scopus Author ID Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 27

Top Venues

Nucleic acids research

Cancer discovery

Cancer research

JCO precision oncology

Azienda USL Toscana Centro

Università degli Studi di Firenze (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Azienda USL Toscana Centro Jan 01 2017

Italy

Head of Bioinformatics Unit :: Sandro Pitigliani Medical Oncology Unit

Università degli Studi di Trento - Dec 31 2016

Italy

Post-doc :: Center for integrative Biology

Azienda Ospedaliero Universitaria Careggi

Italy

Principal Bioinformatician :: Diagnostic genetics unit

Education History

Università degli Studi di Firenze

Italy

PHD

Università degli Studi di Firenze

Italy

MSC

Università degli Studi di Firenze

Italy

BSC

Publications

Ilenia Migliaccio, Dario Romagnoli, Francesca Galardi, Francesca De Luca, Chiara Biagioni, Curigliano Giuseppe, Carmen Criscitiello, Alessandro Marco Minisini, Erica Moretti, Emanuela Risi, Cristina Guarducci, Agostina Nardone, Laura Biganzoli, Matteo Benelli, Luca Malorni
Mutational Analysis of Circulating Tumor DNA in Patients With Estrogen Receptor-Positive/Human Epidermal Growth Factor Receptor 2-Negative Advanced Breast Cancer Receiving Palbociclib: Results From the TREnd Trial. JCO precision oncology 8 (2024)
Ilenia Migliaccio, Dario Romagnoli, Francesca Galardi, Francesca De Luca, Chiara Biagioni, Curigliano Giuseppe, Carmen Criscitiello, Alessandro Marco Minisini, Erica Moretti, Emanuela Risi, Cristina Guarducci, Agostina Nardone, Laura Biganzoli, Matteo Benelli, Luca Malorni
Mutational Analysis of Circulating Tumor DNA in Patients With Estrogen Receptor-Positive/Human Epidermal Growth Factor Receptor 2-Negative Advanced Breast Cancer Receiving Palbociclib: Results From the TREnd Trial. JCO precision oncology 8 (2024)
Gian Marco Franceschini, Orsetta Quaini, Kei Mizuno, Francesco Orlando, Yari Ciani, Sheng Yu Ku, Michael Sigouros, Emily Rothmann, Alicia Alonso, Matteo Benelli, Caterina Nardella, Joonghoon Auh, Dory Freeman, Brian Hanratty, Mohamed Adil, Olivier Elemento, Scott T Tagawa, Felix Y Feng, Orazio Caffo, Consuelo Buttigliero, Umberto Basso, Peter S Nelson, Eva Corey, Michael C Haffner, Gerhardt Attard, Ana M Aparicio, Francesca Demichelis, Himisha Beltran
Noninvasive Detection of Neuroendocrine Prostate Cancer through Targeted Cell-free DNA Methylation. Cancer discovery 14 (3) (2024)
Gian Marco Franceschini, Orsetta Quaini, Kei Mizuno, Francesco Orlando, Yari Ciani, Sheng Yu Ku, Michael Sigouros, Emily Rothmann, Alicia Alonso, Matteo Benelli, Caterina Nardella, Joonghoon Auh, Dory Freeman, Brian Hanratty, Mohamed Adil, Olivier Elemento, Scott T Tagawa, Felix Y Feng, Orazio Caffo, Consuelo Buttigliero, Umberto Basso, Peter S Nelson, Eva Corey, Michael C Haffner, Gerhardt Attard, Ana M Aparicio, Francesca Demichelis, Himisha Beltran
Noninvasive Detection of Neuroendocrine Prostate Cancer through Targeted Cell-free DNA Methylation. Cancer discovery 14 (3) (2024)
Gian Marco Franceschini, Orsetta Quaini, Kei Mizuno, Francesco Orlando, Yari Ciani, Sheng Yu Ku, Michael Sigouros, Emily Rothmann, Alicia Alonso, Matteo Benelli, Caterina Nardella, Joonghoon Auh, Dory Freeman, Brian Hanratty, Mohamed Adil, Olivier Elemento, Scott T Tagawa, Felix Y Feng, Orazio Caffo, Consuelo Buttigliero, Umberto Basso, Peter S Nelson, Eva Corey, Michael C Haffner, Gerhardt Attard, Ana M Aparicio, Francesca Demichelis, Himisha Beltran
Non-invasive detection of neuroendocrine prostate cancer through targeted cell-free DNA methylation. Cancer discovery (2024)
Gian Marco Franceschini, Orsetta Quaini, Kei Mizuno, Francesco Orlando, Yari Ciani, Sheng Yu Ku, Michael Sigouros, Emily Rothmann, Alicia Alonso, Matteo Benelli, Caterina Nardella, Joonghoon Auh, Dory Freeman, Brian Hanratty, Mohamed Adil, Olivier Elemento, Scott T Tagawa, Felix Y Feng, Orazio Caffo, Consuelo Buttigliero, Umberto Basso, Peter S Nelson, Eva Corey, Michael C Haffner, Gerhardt Attard, Ana M Aparicio, Francesca Demichelis, Himisha Beltran
Non-invasive detection of neuroendocrine prostate cancer through targeted cell-free DNA methylation. Cancer discovery (2024)
Marina Bacci, Nicla Lorito, Alfredo Smiriglia, Angela Subbiani, Francesca Bonechi, Giuseppina Comito, Ludivine Morisset, Rania El-Botty, Matteo Benelli, Joanna I López-Velazco, María M Caffarel, Ander Urruticoechea, George Sflomos, Luca Malorni, Michela Corsini, Luigi Ippolito, Elisa Giannoni, Icro Meattini, Vittoria Matafora, Kristina M Havas, Angela Bachi, Paola Chiarugi, Elisabetta Marangoni, Andrea Morandi
Acetyl-CoA carboxylase 1 controls a lipid droplet-peroxisome axis and is a vulnerability of endocrine-resistant ER + breast cancer. Science translational medicine 16 (736) (2024)
Ilenia Migliaccio, Dario Romagnoli, Francesca Galardi, Francesca De Luca, Chiara Biagioni, Curigliano Giuseppe, Carmen Criscitiello, Alessandro Marco Minisini, Erica Moretti, Emanuela Risi, Cristina Guarducci, Agostina Nardone, Laura Biganzoli, Matteo Benelli, Luca Malorni
Mutational Analysis of Circulating Tumor DNA in Patients With Estrogen Receptor-Positive/Human Epidermal Growth Factor Receptor 2-Negative Advanced Breast Cancer Receiving Palbociclib: Results From the TREnd Trial. JCO precision oncology 8 (2024)
Marina Bacci, Nicla Lorito, Alfredo Smiriglia, Angela Subbiani, Francesca Bonechi, Giuseppina Comito, Ludivine Morisset, Rania El-Botty, Matteo Benelli, Joanna I López-Velazco, María M Caffarel, Ander Urruticoechea, George Sflomos, Luca Malorni, Michela Corsini, Luigi Ippolito, Elisa Giannoni, Icro Meattini, Vittoria Matafora, Kristina M Havas, Angela Bachi, Paola Chiarugi, Elisabetta Marangoni, Andrea Morandi
Acetyl-CoA carboxylase 1 controls a lipid droplet-peroxisome axis and is a vulnerability of endocrine-resistant ER + breast cancer. Science translational medicine 16 (736) (2024)
Emanuela Kerschbamer, Michele Arnoldi, Takshashila Tripathi, Miguel Pellegrini, Samuele Maturi, Serkan Erdin, Elisa Salviato, Francesca Di Leva, Endre Sebestyén, Erik Dassi, Giulia Zarantonello, Matteo Benelli, Eric Campos, M Albert Basson, James F Gusella, Stefano Gustincich, Silvano Piazza, Francesca Demichelis, Michael E Talkowski, Francesco Ferrari, Marta Biagioli
CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing. Nucleic acids research 50 (22) (2023)
Emanuela Kerschbamer, Michele Arnoldi, Takshashila Tripathi, Miguel Pellegrini, Samuele Maturi, Serkan Erdin, Elisa Salviato, Francesca Di Leva, Endre Sebestyén, Erik Dassi, Giulia Zarantonello, Matteo Benelli, Eric Campos, M Albert Basson, James F Gusella, Stefano Gustincich, Silvano Piazza, Francesca Demichelis, Michael E Talkowski, Francesco Ferrari, Marta Biagioli
CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing. Nucleic acids research 50 (22) (2023)
Annalisa Petrelli, Sabrina Rizzolio, Filippo Pietrantonio, Sara Erika Bellomo, Matteo Benelli, Loris De Cecco, Dario Romagnoli, Enrico Berrino, Claudia Orrù, Salvatore Ribisi, Daniel Moya-Rull, Cristina Migliore, Daniela Conticelli, Irene M Maina, Elisabetta Puliga, Violeta Serra, Benedetta Pellegrino, Alba Llop-Guevara, Antonino Musolino, Salvatore Siena, Andrea Sartore-Bianchi, Michele Prisciandaro, Federica Morano, Maria Antista, Uberto Fumagalli Romario, Giovanni De Manzoni, Maurizio Degiuli, Gian Luca Baiocchi, Marco F Amisano, Alessandro Ferrero, Caterina Marchio, Simona Corso, Silvia Giordano
BRCA2 Germline Mutations Identify Gastric Cancers Responsive to PARP Inhibitors. Cancer research 83 (10) (2023)
Emanuela Kerschbamer, Michele Arnoldi, Takshashila Tripathi, Miguel Pellegrini, Samuele Maturi, Serkan Erdin, Elisa Salviato, Francesca Di Leva, Endre Sebestyén, Erik Dassi, Giulia Zarantonello, Matteo Benelli, Eric Campos, M Albert Basson, James F Gusella, Stefano Gustincich, Silvano Piazza, Francesca Demichelis, Michael E Talkowski, Francesco Ferrari, Marta Biagioli
CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing. Nucleic acids research 50 (22) (2023)
Annalisa Petrelli, Sabrina Rizzolio, Filippo Pietrantonio, Sara Erika Bellomo, Matteo Benelli, Loris De Cecco, Dario Romagnoli, Enrico Berrino, Claudia Orrù, Salvatore Ribisi, Daniel Moya-Rull, Cristina Migliore, Daniela Conticelli, Irene M Maina, Elisabetta Puliga, Violeta Serra, Benedetta Pellegrino, Alba Llop-Guevara, Antonino Musolino, Salvatore Siena, Andrea Sartore-Bianchi, Michele Prisciandaro, Federica Morano, Maria Antista, Uberto Fumagalli Romario, Giovanni De Manzoni, Maurizio Degiuli, Gian Luca Baiocchi, Marco F Amisano, Alessandro Ferrero, Caterina Marchio, Simona Corso, Silvia Giordano
BRCA2 Germline Mutations Identify Gastric Cancers Responsive to PARP Inhibitors. Cancer research 83 (10) (2023)
Emanuela Kerschbamer, Michele Arnoldi, Takshashila Tripathi, Miguel Pellegrini, Samuele Maturi, Serkan Erdin, Elisa Salviato, Francesca Di Leva, Endre Sebestyén, Erik Dassi, Giulia Zarantonello, Matteo Benelli, Eric Campos, M Albert Basson, James F Gusella, Stefano Gustincich, Silvano Piazza, Francesca Demichelis, Michael E Talkowski, Francesco Ferrari, Marta Biagioli
CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing. Nucleic acids research 50 (22) (2023)
Annalisa Petrelli, Sabrina Rizzolio, Filippo Pietrantonio, Sara Erika Bellomo, Matteo Benelli, Loris De Cecco, Dario Romagnoli, Enrico Berrino, Claudia Orrù, Salvatore Ribisi, Daniel Moya-Rull, Cristina Migliore, Daniela Conticelli, Irene M Maina, Elisabetta Puliga, Violeta Serra, Benedetta Pellegrino, Alba Llop-Guevara, Antonino Musolino, Salvatore Siena, Andrea Sartore-Bianchi, Michele Prisciandaro, Federica Morano, Maria Antista, Uberto Fumagalli Romario, Giovanni De Manzoni, Maurizio Degiuli, Gian Luca Baiocchi, Marco F Amisano, Alessandro Ferrero, Caterina Marchio, Simona Corso, Silvia Giordano
BRCA2 Germline Mutations Identify Gastric Cancers Responsive to PARP Inhibitors. Cancer research (2023)
Dario Romagnoli, Agostina Nardone, Francesca Galardi, Marta Paoli, Francesca De Luca, Chiara Biagioni, Gian Marco Franceschini, Marta Pestrin, Giuseppina Sanna, Erica Moretti, Francesca Demichelis, Ilenia Migliaccio, Laura Biganzoli, Luca Malorni, Matteo Benelli
MIMESIS: minimal DNA-methylation signatures to quantify and classify tumor signals in tissue and cell-free DNA samples. Briefings in bioinformatics 24 (2) (2023)
Dario Romagnoli, Agostina Nardone, Francesca Galardi, Marta Paoli, Francesca De Luca, Chiara Biagioni, Gian Marco Franceschini, Marta Pestrin, Giuseppina Sanna, Erica Moretti, Francesca Demichelis, Ilenia Migliaccio, Laura Biganzoli, Luca Malorni, Matteo Benelli
MIMESIS: minimal DNA-methylation signatures to quantify and classify tumor signals in tissue and cell-free DNA samples. Briefings in bioinformatics (2023)
Emanuela Kerschbamer, Michele Arnoldi, Takshashila Tripathi, Miguel Pellegrini, Samuele Maturi, Serkan Erdin, Elisa Salviato, Francesca Di Leva, Endre Sebestyén, Erik Dassi, Giulia Zarantonello, Matteo Benelli, Eric Campos, M Albert Basson, James F Gusella, Stefano Gustincich, Silvano Piazza, Francesca Demichelis, Michael E Talkowski, Francesco Ferrari, Marta Biagioli
CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing. Nucleic acids research (2022)
Ilenia Migliaccio, Marta Paoli, Emanuela Risi, Chiara Biagioni, Laura Biganzoli, Matteo Benelli, Luca Malorni
PIK3CA co-occurring mutations and copy-number gain in hormone receptor positive and HER2 negative breast cancer. NPJ breast cancer 8 (1) (2022)
Carmine De Angelis, Xiaoyong Fu, Maria Letizia Cataldo, Agostina Nardone, Resel Pereira, Jamunarani Veeraraghavan, Sarmistha Nanda, Lanfang Qin, Vidyalakshmi Sethunath, Nicholas Wang, Susan G Hilsenbeck, Matteo Benelli, Ilenia Migliaccio, Cristina Guarducci, Luca Malorni, Lacey M Litchfield, Jiangang Liu, Joshua Donaldson, Pier Selenica, David N Brown, Britta Weigelt, Jorge S Reis-Filho, Ben H Park, Sara A Hurvitz, Dennis J Slamon, Mothaffar F Rimawi, Valerie M Jansen, Rinath M Jeselsohn, C Kent Osborne, Rachel Schiff
Activation of the IFN Signaling Pathway is Associated with Resistance to CDK4/6 Inhibitors and Immune Checkpoint Activation in ER-Positive Breast Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (17) (2021)
Matteo Benelli, Gian Marco Franceschini, Alberto Magi, Dario Romagnoli, Chiara Biagioni, Ilenia Migliaccio, Luca Malorni, Francesca Demichelis
Charting differentially methylated regions in cancer with Rocker-meth. Communications biology 4 (1) (2021)
Philippe Aftimos, Mafalda Oliveira, Alexandre Irrthum, Debora Fumagalli, Christos Sotiriou, Einav Nili Gal-Yam, Mark E Robson, Justin Ndozeng, Andrea Gombos, Eva Ciruelos Gil, Evandro de Azambuja, Giuseppe Viale, Elsemieke D Scheepers, Curigliano Giuseppe, Judith M Bliss, Jorge S Reis-Filho, Marco Colleoni, Marija Balić, Fatima Cardoso, Joan Albanell, Caroline Duhem, Sandrine Marreaud, Dario Romagnoli, Beatriz Rojas, Andrea Gombos, Hans P M W Wildiers, Angel L Guerrero-Zotano, Peter S Hall, Andrea Bonetti, Karolina Fs Larsson, Martina Degiorgis, Silvia Khodaverdi, Richard Greil, Ásgerdur Sverrisdóttir, Marta Paoli, Ethel Seyll, Sibylle Loibl, Barbro Linderholm, Gabriele Zoppoli, Nancy E Davidson, Oskar Th Johannsson, Philippe L Bedard, Sherene Loi, Susan Knox, David A Cameron, Nadia Harbeck, Maite Lasa Montoya, Mariana Brandão, Andrea Vingiani, Carmela Caballero, Florentine S Hilbers, Lucy R Yates, Matteo Benelli, David Venet, Martine J Piccart
Genomic and Transcriptomic Analyses of Breast Cancer Primaries and Matched Metastases in AURORA, the Breast International Group (BIG) Molecular Screening Initiative. Cancer discovery 11 (11) (2021)
Amelia McCartney, Martina Bonechi, Francesca De Luca, Chiara Biagioni, Curigliano Giuseppe, Erica Moretti, Alessandro Marco Minisini, Mattias Bergqvist, Matteo Benelli, Ilenia Migliaccio, Francesca Galardi, Emanuela Risi, Irene De Santo, Dario Romagnoli, Laura Biganzoli, Angelo Di Leo, Luca Malorni
Plasma Thymidine Kinase Activity as a Biomarker in Patients with Luminal Metastatic Breast Cancer Treated with Palbociclib within the TREnd Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (9) (2020)
Matteo Benelli, Andrea Barucci, Nicola Zoppetti, Silvia Calusi, Laura Redapi, Giuseppe Della Gala, Stefano Piffer, Luca Bernardi, Franco Fusi, Stefania Pallotta
Comprehensive Analysis of Radiomic Datasets by RadAR. Cancer research 80 (15) (2020)
Joanna Cyrta, Anke Augspach, Maria Rosaria De Filippo, Davide Prandi, Phillip Thienger, Matteo Benelli, Victoria Cooley, Rohan Bareja, David C Wilkes, Sung-Suk Chae, Paola Cavaliere, Noah Dephoure, Anne-Christine Uldry, Sophie Braga Lagache, Luca Roma, Sandra Cohen, Muriel Jaquet, Laura P Brandt, Mohammed Alshalalfa, Loredana Puca, Andrea Sboner, Felix Y Feng, Shangqian Wang, Himisha Beltran, Tamara Lotan, Martin Spahn, Marianna Kruithof de Julio, Juliet Chen, Karla V Ballman, Francesca Demichelis, Salvatore Piscuoglio, Mark A Rubin
Role of specialized composition of SWI/SNF complexes in prostate cancer lineage plasticity. Nature communications 11 (1) (2020)
Dario Romagnoli, Giulia Boccalini, Martina Bonechi, Chiara Biagioni, Paola Fassan, Roberto Bertorelli, Veronica De Sanctis, Angelo Di Leo, Ilenia Migliaccio, Luca Malorni, Matteo Benelli
ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data. BMC genomics 19 (1) (2018)

Matteo Benelli.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Matteo Benelli