Mehrbod Estaki

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 17

Top Venues

bioRxiv : the preprint server for biology

mSystems

Journal of Crohn's & colitis

Gut microbes

University of California San Diego

University of British Columbia Okanagan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego

United States

Postdoctoral Fellow :: Pediatrics

Education History

University of British Columbia Okanagan

Canada

PHD :: Biology

Publications

Amanda Hazel Dilmore, Rayus Kuplicki, Daniel McDonald, Megha Kumar, Mehrbod Estaki, Nicholas Youngblut, Alexander Tyakht, Gail Ackermann, Colette Blach, Siamak MahmoudianDehkordi, Boadie W Dunlop, Sudeepa Bhattacharyya, Salvador Guinjoan, Pooja Mandaviya, Ruth E Ley, Rima Kaddaruh-Dauok, Martin P Paulus, Rob Knight, null null
Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression. bioRxiv : the preprint server for biology (2024)
Amanda Hazel Dilmore, Rayus Kuplicki, Daniel McDonald, Megha Kumar, Mehrbod Estaki, Nicholas Youngblut, Alexander Tyakht, Gail Ackermann, Colette Blach, Siamak MahmoudianDehkordi, Boadie W Dunlop, Sudeepa Bhattacharyya, Salvador Guinjoan, Pooja Mandaviya, Ruth E Ley, Rima Kaddaruh-Dauok, Martin P Paulus, Rob Knight, null null
Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression. bioRxiv : the preprint server for biology (2024)
Gibraan Rahman, James T Morton, Cameron Martino, Gregory D Sepich-Poore, Celeste Allaband, Caitlin Guccione, Yang Chen, Daniel Hakim, Mehrbod Estaki, Rob Knight
BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations. bioRxiv : the preprint server for biology (2023)
Gibraan Rahman, James T Morton, Cameron Martino, Gregory D Sepich-Poore, Celeste Allaband, Caitlin Guccione, Yang Chen, Daniel Hakim, Mehrbod Estaki, Rob Knight
BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations. bioRxiv : the preprint server for biology (2023)
Natasha Haskey, Mehrbod Estaki, Jiayu Ye, Rachel K Shim, Sunny Singh, Levinus A Dieleman, Kevan Jacobson, Deanna L Gibson
A Mediterranean Diet Pattern improves intestinal inflammation concomitant with reshaping of the bacteriome in ulcerative colitis: A randomized controlled trial. Journal of Crohn's & colitis (2023)
Gibraan Rahman, James T Morton, Cameron Martino, Gregory D Sepich-Poore, Celeste Allaband, Caitlin Guccione, Yang Chen, Daniel Hakim, Mehrbod Estaki, Rob Knight
BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations. bioRxiv : the preprint server for biology (2023)
Natasha Haskey, Mehrbod Estaki, Jiayu Ye, Rachel K Shim, Sunny Singh, Levinus A Dieleman, Kevan Jacobson, Deanna L Gibson
A Mediterranean Diet Pattern improves intestinal inflammation concomitant with reshaping of the bacteriome in ulcerative colitis: A randomized controlled trial. Journal of Crohn's & colitis (2023)
Mehrbod Estaki, Lisa Langsetmo, Michelle D Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie L Stone, Deborah M Kado
Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study. The journals of gerontology. Series A, Biological sciences and medical sciences (2023)
Natasha Haskey, Mehrbod Estaki, Jiayu Ye, Rachel K Shim, Sunny Singh, Levinus A Dieleman, Kevan Jacobson, Deanna L Gibson
A Mediterranean Diet Pattern improves intestinal inflammation concomitant with reshaping of the bacteriome in ulcerative colitis: A randomized controlled trial. Journal of Crohn's & colitis (2023)
George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D Swafford, Niema Moshiri, Tajana Rosing, Rob Knight
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases. mSystems 7 (2) (2022)
Natasha Haskey, Jiayu Ye, Mehrbod Estaki, Andrea A Verdugo Meza, Jacqueline A Barnett, Mitra Yousefi, Blake W Birnie, Samantha Gruenheid, Sanjoy Ghosh, Deanna L Gibson
A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model. Gut microbes 14 (1) (2022)
Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse A Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. mSystems 6 (2) (2021)
Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel D Belk, Emily Borsom, Zachary Burcham, Justine W Debelius, Heather Deel, Alexandra L Emmons, Mehrbod Estaki, Chloe Herman, Christopher R Keefe, Jamie T Morton, Renato Renison Moreira Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E Miwa, Terry A Kerere, Carline Coote, Richard A Bonneau, Rob Knight, Guilherme Corrêa de Oliveira, Piraveen Gopalasingam, Benjamin D Kaehler, Emily K Cope, Jessica L Metcalf, Michael Scott Robeson, Nicholas A Bokulich, J Gregory Caporaso
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. PLoS computational biology 17 (6) (2021)
Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob Knight
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. BioTechniques 70 (3) (2021)
Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez-Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda Ferre, Ho-Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang
Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. The ISME journal 15 (11) (2021)
Mehrbod Estaki, Douglas W Morck, Sanjoy Ghosh, Candice Quin, Jason Pither, Jacqueline A Barnett, Sandeep K Gill, Deanna L Gibson
Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2-/- Mice. mSystems 5 (5) (2020)
Mehrbod Estaki, Douglas W Morck, Sanjoy Ghosh, Candice Quin, Jason Pither, Jacqueline A Barnett, Sandeep K Gill, Deanna L Gibson
Correction for Estaki et al., "Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2-/- Mice". mSystems 5 (6) (2020)

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Publication Activity (10 Years)

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Mehrbod Estaki