Niina Haiminen

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2022
Publications (10 Years): 9

Top Venues

IBM Research

University of Helsinki (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

IBM Research

United States

Research Scientist :: Computational Genomics

Education History

University of Helsinki

Finland

PHD :: Department of Computer Science

Publications

Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D Sepich-Poore, Austin D Swafford, Promi Das, Justin P Shaffer, Franck Lejzerowicz, Pedro Belda Ferre, Aki Samuli Havulinna, Guillaume Méric, Teemu J Niiranen, Leo Lahti, Veikko V Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A Gilbert, Rob Knight
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. mSystems 7 (2) (2022)
Justin P Shaffer, Louis-Felix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, null null
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nature microbiology 7 (12) (2022)
Kalen Cantrell, Marcus W Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L Beck, Qiyun Zhu, Erfan Sayyari, James T Morton, George Armstrong, Anupriya Tripathi, Julia M Gauglitz, Clarisse A Marotz, Nathaniel L Matteson, Cameron Martino, Jon G Sanders, Anna Paola Carrieri, Se Jin Song, Austin D Swafford, Pieter C Dorrestein, Kristian G Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. mSystems 6 (2) (2021)
Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Rob Knight, Yang-Yu Liu
Challenges in benchmarking metagenomic profilers. Nature methods 18 (6) (2021)
Lingjing Jiang, Niina Haiminen, Anna Paola Carrieri, Shi Huang, Yoshiki Vázquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D Swafford, Rob Knight, Loki Natarajan
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. Biometrics (2021)
George Armstrong, Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri, Qiyun Zhu, Antonio Gonzalez, Imran McGrath, Kristen L Beck, Daniel Hakim, Aki Samuli Havulinna, Guillaume Méric, Teemu J Niiranen, Leo Lahti, Veikko V Salomaa, Mohit Jain, Michael Inouye, Austin D Swafford, Ho-Cheol Kim, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob Knight
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. Genome research 31 (11) (2021)
Niina Haiminen, Filippo Utro, Edward Seabolt, Laxmi Parida
Functional profiling of COVID-19 respiratory tract microbiomes. Scientific reports 11 (1) (2021)
Kristen L Beck, Niina Haiminen, David Chambliss, Stefan Edlund, Mark Kunitomi, B Carol Huang, Nguyet Kong, Balasubramanian Ganesan, Robert Baker, Peter Markwell, Ban Kawas, Matthew Davis, Robert J Prill, Harsha Krishnareddy, Edward Seabolt, Carl H Marlowe, Sophie Pierre, André Quintanar, Laxmi Parida, Geraud Dubois, James H Kaufman, Bart C Weimer
Monitoring the microbiome for food safety and quality using deep shotgun sequencing. NPJ science of food 5 (1) (2021)
Niina Haiminen, Stefan Edlund, David Chambliss, Mark Kunitomi, Bart C Weimer, Balasubramanian Ganesan, Robert Baker, Peter Markwell, Matthew Davis, B Carol Huang, Nguyet Kong, Robert J Prill, Carl H Marlowe, André Quintanar, Sophie Pierre, Geraud Dubois, James H Kaufman, Laxmi Parida, Kristen L Beck
Food authentication from shotgun sequencing reads with an application on high protein powders. NPJ science of food 3 (2019)

Niina Haiminen.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Niina Haiminen