Michael W Nachman

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 48

Top Topics

Gene Expression

Top Venues

Genome biology and evolution

G3 (Bethesda, Md.)

The Journal of heredity

This page only lists publications with an associated author ORCID identifier.

Publications

Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey, Michael J Sheehan, Taichi A Suzuki, Lydia K Wooldridge, Hilda Opoku Frempong, Raman Akinyanju Lawal, Gary A Churchill, Cathleen Lutz, Nadia Rosenthal, Jacqueline K White, Michael W Nachman
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models. PLoS genetics 20 (4) (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey, Michael J Sheehan, Taichi A Suzuki, Lydia K Wooldridge, Hilda Opoku Frempong, Raman Akinyanju Lawal, Gary A Churchill, Cathleen Lutz, Nadia Rosenthal, Jacqueline K White, Michael W Nachman
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models. PLoS genetics 20 (4) (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey, Michael J Sheehan, Taichi A Suzuki, Lydia K Wooldridge, Hilda Opoku Frempong, Raman Akinyanju Lawal, Gary A Churchill, Cathleen Lutz, Nadia Rosenthal, Jacqueline K White, Michael W Nachman
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models. PLoS genetics 20 (4) (2024)
Yocelyn T Gutiérrez-Guerrero, Megan Phifer-Rixey, Michael W Nachman
Across two continents: The genomic basis of environmental adaptation in house mice (Mus musculus domesticus) from the Americas. PLoS genetics 20 (7) (2024)
Yocelyn T Gutiérrez-Guerrero, Megan Phifer-Rixey, Michael W Nachman
Across two continents: The genomic basis of environmental adaptation in house mice (Mus musculus domesticus) from the Americas. PLoS genetics 20 (7) (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Yocelyn T Gutiérrez-Guerrero, Megan Phifer-Rixey, Michael W Nachman
Across two continents: The genomic basis of environmental adaptation in house mice (Mus musculus domesticus) from the Americas. PLoS genetics 20 (7) (2024)
Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey, Michael J Sheehan, Taichi A Suzuki, Lydia K Wooldridge, Hilda Opoku Frempong, Raman Akinyanju Lawal, Gary A Churchill, Cathleen Lutz, Nadia Rosenthal, Jacqueline K White, Michael W Nachman
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models. PLoS genetics 20 (4) (2024)
Yocelyn T Gutiérrez-Guerrero, Megan Phifer-Rixey, Michael W Nachman
Across two continents: The genomic basis of environmental adaptation in house mice (Mus musculus domesticus) from the Americas. PLoS genetics 20 (7) (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Carla Cicero, Michelle S Koo, Emily M Braker, John Abbott, David Bloom, Mariel Campbell, Joseph A Cook, John R Demboski, Andrew C Doll, Lindsey M Frederick, Angela J Linn, Teresa J Mayfield-Meyer, Dusty L McDonald, Michael W Nachman, Link E Olson, Dawn Roberts, Derek S Sikes, Christopher C Witt, Elizabeth A Wommack
Arctos: Community-driven innovations for managing natural and cultural history collections. PloS one 19 (5) (2024)
Erin R Voss, Merly Escalona, Krzysztof M Kozak, William Seligmann, Colin W Fairbairn, Oanh Nguyen, Mohan P A Marimuthu, Christopher J Conroy, James L Patton, Rauri C K Bowie, Michael W Nachman
De novo genome assembly of a Geomyid rodent, Botta's pocket gopher (Thomomys bottae bottae). The Journal of heredity (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey, Michael J Sheehan, Taichi A Suzuki, Lydia K Wooldridge, Hilda Opoku Frempong, Raman Akinyanju Lawal, Gary A Churchill, Cathleen Lutz, Nadia Rosenthal, Jacqueline K White, Michael W Nachman
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models. PLoS genetics 20 (4) (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Carla Cicero, Michelle S Koo, Emily M Braker, John Abbott, David Bloom, Mariel Campbell, Joseph A Cook, John R Demboski, Andrew C Doll, Lindsey M Frederick, Angela J Linn, Teresa J Mayfield-Meyer, Dusty L McDonald, Michael W Nachman, Link E Olson, Dawn Roberts, Derek S Sikes, Christopher C Witt, Elizabeth A Wommack
Arctos: Community-driven innovations for managing natural and cultural history collections. PloS one 19 (5) (2024)
Beth L Dumont, Daniel M Gatti, Mallory A Ballinger, Dana Lin, Megan Phifer-Rixey, Michael J Sheehan, Taichi A Suzuki, Lydia K Wooldridge, Hilda Opoku Frempong, Raman Akinyanju Lawal, Gary A Churchill, Cathleen Lutz, Nadia Rosenthal, Jacqueline K White, Michael W Nachman
Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models. PLoS genetics 20 (4) (2024)
Yocelyn T Gutiérrez-Guerrero, Megan Phifer-Rixey, Michael W Nachman
Across two continents: The genomic basis of environmental adaptation in house mice (Mus musculus domesticus) from the Americas. PLoS genetics 20 (7) (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Ruta Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery. Genome biology and evolution (2024)
Sylvia M Durkin, Mallory A Ballinger, Michael W Nachman
Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice. PLoS genetics 20 (2) (2024)
Yocelyn T Gutiérrez-Guerrero, Megan Phifer-Rixey, Michael W Nachman
Across two continents: the genomic basis of environmental adaptation in house mice ( Mus musculus domesticus ) from the Americas. bioRxiv : the preprint server for biology (2023)
David N Manahan, Michael W Nachman
Alternative splicing and environmental adaptation in wild house mice. Heredity (2023)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Mohan P A Marimuthu, Oanh Nguyen, Michael W Nachman, Rauri C K Bowie
A highly contiguous genome assembly for the California quail (Callipepla californica). The Journal of heredity (2023)
Kennedy D Agwamba, Michael W Nachman
The demographic history of house mice (Mus musculus domesticus) in eastern North America. G3 (Bethesda, Md.) 13 (2) (2023)
Kennedy D Agwamba, Michael W Nachman
The demographic history of house mice (Mus musculus domesticus) in eastern North America. G3 (Bethesda, Md.) 13 (2) (2023)
Mallory A Ballinger, Katya L Mack, Sylvia M Durkin, Eric A Riddell, Michael W Nachman
Environmentally robust cis -regulatory changes underlie rapid climatic adaptation. Proceedings of the National Academy of Sciences of the United States of America 120 (39) (2023)
Kennedy D Agwamba, Michael W Nachman
The demographic history of house mice (Mus musculus domesticus) in eastern North America. G3 (Bethesda, Md.) 13 (2) (2023)
Michael W Nachman, Elizabeth J Beckman, Rauri Ck Bowie, Carla Cicero, Chris J Conroy, Robert Dudley, Tyrone B Hayes, Michelle S Koo, Eileen A Lacey, Christopher H Martin, Jimmy A McGuire, James L Patton, Carol L Spencer, Rebecca D Tarvin, Marvalee H Wake, Ian J Wang, Anang Achmadi, Sergio Ticul Álvarez-Castañeda, Michael J Andersen, Jairo Arroyave, Christopher C Austin, F Keith Barker, Lisa N Barrow, George F Barrowclough, John Bates, Aaron M Bauer, Kayce C Bell, Rayna C Bell, Allison W Bronson, Rafe M Brown, Frank T Burbrink, Kevin J Burns, Carlos Daniel Cadena, David C Cannatella, Todd A Castoe, Prosanta Chakrabarty, Jocelyn P Colella, Joseph A Cook, Joel L Cracraft, Drew R Davis, Alison R Davis Rabosky, Guillermo D'Elía, John P Dumbacher, Jonathan L Dunnum, Scott V Edwards, Jacob A Esselstyn, Julián Faivovich, Jon Fjeldså, Oscar A Flores-Villela, Kassandra Ford, Jérôme Fuchs, Matthew K Fujita, Jeffrey M Good, Eli Greenbaum, Harry W Greene, Shannon Hackett, Amir Hamidy, James Hanken, Tri Haryoko, Melissa Tr Hawkins, Lawrence R Heaney, David M Hillis, Bradford D Hollingsworth, Angela D Hornsby, Peter A Hosner, Mohammad Irham, Sharon Jansa, Rosa Alicia Jiménez, Leo Joseph, Jeremy J Kirchman, Travis J LaDuc, Adam D Leaché, Enrique P Lessa, Hernán López-Fernández, Nicholas A Mason, John E McCormack, Caleb D McMahan, Robert G Moyle, Ricardo A Ojeda, Link E Olson, Chan Kin Onn, Lynne R Parenti, Gabriela Parra-Olea, Bruce D Patterson, Gregory B Pauly, Silvia E Pavan, A Townsend Peterson, Steven Poe, Daniel L Rabosky, Christopher J Raxworthy, Sushma Reddy, Alejandro Rico-Guevara, Awal Riyanto, Luiz A Rocha, Santiago R Ron, Sean M Rovito, Kevin C Rowe, Jodi Rowley, Sara Ruane, David Salazar-Valenzuela, Allison J Shultz, Brian Sidlauskas, Derek S Sikes, Nancy B Simmons, Melanie L J Stiassny, Jeffrey W Streicher, Bryan L Stuart, Adam P Summers, Jose Tavera, Pablo Teta, Cody W Thompson, Robert M Timm, Omar Torres-Carvajal, Gary Voelker, Robert S Voss, Kevin Winker, Christopher Witt, Elizabeth A Wommack, Robert M Zink
Specimen collection is essential for modern science. PLoS biology 21 (11) (2023)
Krzysztof M Kozak, Merly Escalona, Noravit Chumchim, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Ruta Sahasrabudhe, William Seligmann, Chris Conroy, James L Patton, Rauri C K Bowie, Michael W Nachman
A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris. The Journal of heredity (2023)
Phred M Benham, Carla Cicero, Devon A DeRaad, John E McCormack, Robert K Wayne, Merly Escalona, Eric Beraut, Mohan P A Marimuthu, Oanh Nguyen, Michael W Nachman, Rauri C K Bowie
A highly contiguous reference genome for the Steller's jay (Cyanocitta stelleri). The Journal of heredity (2023)
Sarah E Banker, François Bonhomme, Michael W Nachman
Bidirectional Introgression between Mus musculus domesticus and Mus spretus. Genome biology and evolution 14 (1) (2022)
Kennedy D Agwamba, Michael W Nachman
The demographic history of house mice (Mus musculus domesticus) in eastern North America. G3 (Bethesda, Md.) (2022)
Noëlle K J Bittner, Katya L Mack, Michael W Nachman
Shared Patterns of Gene Expression and Protein Evolution Associated with Adaptation to Desert Environments in Rodents. Genome biology and evolution 14 (11) (2022)
Elizabeth J Beckman, Felipe de Mello Martins, Taichi A Suzuki, Ke Bi, Sara M Keeble, Jeffrey M Good, Andreas S Chavez, Mallory A Ballinger, Kennedy Agwamba, Michael W Nachman
The genomic basis of high-elevation adaptation in wild house mice (Mus musculus domesticus) from South America. Genetics 220 (2) (2022)
Kathleen G Ferris, Andreas S Chavez, Taichi A Suzuki, Elizabeth J Beckman, Megan Phifer-Rixey, Ke Bi, Michael W Nachman
The genomics of rapid climatic adaptation and parallel evolution in North American house mice. PLoS genetics 17 (4) (2021)
Noëlle K J Bittner, Katya L Mack, Michael W Nachman
Gene expression plasticity and desert adaptation in house mice. Evolution; international journal of organic evolution 75 (6) (2021)
Taichi A Suzuki, Felipe M Martins, Megan Phifer-Rixey, Michael W Nachman
The gut microbiota and Bergmann's rule in wild house mice. Molecular ecology 29 (12) (2020)
Katya L Mack, Megan Phifer-Rixey, Bettina Harr, Michael W Nachman
Gene Expression Networks Across Multiple Tissues Are Associated with Rates of Molecular Evolution in Wild House Mice. Genes 10 (3) (2019)
Megan Phifer-Rixey, Ke Bi, Kathleen G Ferris, Michael J Sheehan, Dana Lin, Katya L Mack, Sara M Keeble, Taichi A Suzuki, Jeffrey M Good, Michael W Nachman
The genomic basis of environmental adaptation in house mice. PLoS genetics 14 (9) (2018)
Katya L Mack, Mallory A Ballinger, Megan Phifer-Rixey, Michael W Nachman
Gene regulation underlies environmental adaptation in house mice. Genome research 28 (11) (2018)
Andrew H Moeller, Taichi A Suzuki, Megan Phifer-Rixey, Michael W Nachman
Transmission modes of the mammalian gut microbiota. Science (New York, N.Y.) 362 (6413) (2018)
Christopher A Emerling, Frédéric Delsuc, Michael W Nachman
Chitinase genes (CHIAs) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals. Science advances 4 (5) (2018)