Merly Escalona

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 73

Top Topics

Antibiotic Resistance Genes

Top Venues

The Journal of heredity

Nature ecology & evolution

Genome biology and evolution

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Megan Ann Supple, Merly Escalona, Jillian Adkins, Michael R Buchalski, Nicolas Alexandre, Ruta M Sahasrabudhe, Oanh H Nguyen, Samuel Sacco, Colin W Fairbairn, Eric Beraut, William Seligmann, Richard E Green, Erin Meredith, Joshua D Kapp
A genome assembly of the American black bear, Ursus americanus, from California. The Journal of heredity 115 (5) (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh H Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney A Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity 115 (5) (2024)
Whitney L E Tsai, Merly Escalona, Kimball L Garrett, Ryan S Terrill, Ruta M Sahasrabudhe, Oanh H Nguyen, Eric Beraut, William Seligmann, Colin W Fairbairn, Ryan J Harrigan, John E McCormack, Michael E Alfaro, Thomas B Smith, Rachael A Bay
A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia). The Journal of heredity 115 (3) (2024)
Alayna Mead, Sorel T Fitz-Gibbon, Merly Escalona, Eric Beraut, Samuel Sacco, Mohan P A Marimuthu, Oanh H Nguyen, Victoria L Sork
The genome assembly of Island Oak (Quercus tomentella), a relictual island tree species. The Journal of heredity 115 (2) (2024)
Zachary G MacDonald, Sean D Schoville, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Erin Toffelmier, Thomas Gillespie, H Bradley Shaffer
A genome assembly for the Chryxus Arctic (Oeneis chryxus), the highest butterfly in North America. The Journal of heredity (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution (2024)
Dorothy Nevé Baker, Linelle Abueg, Merly Escalona, Katherine A Farquharson, Janet M Lanyon, Diana Le Duc, Torsten Schöneberg, Dominic Absolon, Ying Sims, Olivier Fedrigo, Erich D Jarvis, Katherine Belov, Carolyn J Hogg, Joshua D Kapp
A chromosome-level genome assembly for the dugong (Dugong dugon). The Journal of heredity 115 (2) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Author Correction: Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution (2024)
Alayna Mead, Sorel T Fitz-Gibbon, Merly Escalona, Eric Beraut, Samuel Sacco, Mohan P A Marimuthu, Oanh Nguyen, Victoria L Sork
The genome assembly of Island Oak (Quercus tomentella), a relictual island tree species. The Journal of heredity (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Tyler Wooldridge, Chloé Orland, Erik D Enbody, Merly Escalona, Cade D Mirchandani, Russell B Corbett-Detig, Joshua D Kapp, Nathaniel Fletcher, Karah Ammann, Peter Raimondi, Joshua D Kapp
Limited genomic signatures of population collapse in the critically endangered black abalone ( Haliotis cracherodii ). bioRxiv : the preprint server for biology (2024)
D Nevé Baker, Linelle Abueg, Merly Escalona, Katherine A Farquharson, Janet M Lanyon, Diana Le Duc, Torsten Schöneberg, Dominic Absolon, Ying Sims, Olivier Fedrigo, Erich D Jarvis, Katherine Belov, Carolyn J Hogg, Beth Shapiro
A chromosome-level genome assembly for the dugong (Dugong dugon). The Journal of heredity (2024)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Tyler Wooldridge, Chloé Orland, Erik D Enbody, Merly Escalona, Cade D Mirchandani, Russell B Corbett-Detig, Joshua D Kapp, Nathaniel Fletcher, Karah Ammann, Peter Raimondi, Joshua D Kapp
Limited genomic signatures of population collapse in the critically endangered black abalone ( Haliotis cracherodii ). bioRxiv : the preprint server for biology (2024)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh H Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney A Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity 115 (5) (2024)
Whitney L E Tsai, Merly Escalona, Kimball L Garrett, Ryan S Terrill, Ruta Sahasrabudhe, Oanh Nguyen, Eric Beraut, William Seligmann, Colin W Fairbairn, Ryan J Harrigan, John E McCormack, Michael E Alfaro, Thomas B Smith, Rachael A Bay
A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia). The Journal of heredity (2024)
Tyler Wooldridge, Chloé Orland, Erik D Enbody, Merly Escalona, Cade D Mirchandani, Russell B Corbett-Detig, Joshua D Kapp, Nathaniel Fletcher, Karah Ammann, Peter Raimondi, Joshua D Kapp
Limited genomic signatures of population collapse in the critically endangered black abalone ( Haliotis cracherodii ). bioRxiv : the preprint server for biology (2024)
Erin R Voss, Merly Escalona, Krzysztof M Kozak, William Seligmann, Colin W Fairbairn, Oanh Nguyen, Mohan P A Marimuthu, Christopher J Conroy, James L Patton, Rauri C K Bowie, Michael W Nachman
De novo genome assembly of a Geomyid rodent, Botta's pocket gopher (Thomomys bottae bottae). The Journal of heredity (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Alayna Mead, Sorel T Fitz-Gibbon, Merly Escalona, Eric Beraut, Samuel Sacco, Mohan P A Marimuthu, Oanh H Nguyen, Victoria L Sork
The genome assembly of Island Oak (Quercus tomentella), a relictual island tree species. The Journal of heredity 115 (2) (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery. Genome biology and evolution 16 (4) (2024)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh H Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney A Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of California Pipevine, Aristolochia californica Torr. The Journal of heredity 115 (5) (2024)
Carolyn J Hogg, Richard J Edwards, Katherine A Farquharson, Luke W Silver, Parice Brandies, Emma Peel, Merly Escalona, Frederick R Jaya, Rujiporn Thavornkanlapachai, Kimberley Batley, Tessa M Bradford, J King Chang, Zhiliang Chen, Nandan Deshpande, Martin Dziminski, Kyle M Ewart, Oliver W Griffith, Laia Marin Gual, Katherine L Moon, Kenny J Travouillon, Paul D Waters, Camilla M Whittington, Marc R Wilkins, Kristofer M Helgen, Nathan Lo, Simon Y W Ho, Aurora Ruiz-Herrera, Rachel Paltridge, Jennifer A Marshall Graves, Marilyn B Renfree, Beth Shapiro, Kym M Ottewell, null null, Katherine Belov
Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature ecology & evolution 8 (7) (2024)
Dorothy Nevé Baker, Linelle Abueg, Merly Escalona, Katherine A Farquharson, Janet M Lanyon, Diana Le Duc, Torsten Schöneberg, Dominic Absolon, Ying Sims, Olivier Fedrigo, Erich D Jarvis, Katherine Belov, Carolyn J Hogg, Joshua D Kapp
A chromosome-level genome assembly for the dugong (Dugong dugon). The Journal of heredity 115 (2) (2024)
Megan Ann Supple, Merly Escalona, Jillian Adkins, Michael R Buchalski, Nicolas Alexandre, Ruta M Sahasrabudhe, Oanh H Nguyen, Samuel Sacco, Colin W Fairbairn, Eric Beraut, William Seligmann, Richard E Green, Erin Meredith, Joshua D Kapp
A genome assembly of the American black bear, Ursus americanus, from California. The Journal of heredity 115 (5) (2024)
Tyler Wooldridge, Chloé Orland, Erik D Enbody, Merly Escalona, Cade D Mirchandani, Russell B Corbett-Detig, Joshua D Kapp, Nathaniel Fletcher, Karah Ammann, Peter Raimondi, Joshua D Kapp
Limited genomic signatures of population collapse in the critically endangered black abalone ( Haliotis cracherodii ). bioRxiv : the preprint server for biology (2024)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Ruta Sahasrabudhe, Benjamin L King, W Kelley Thomas, Adrienne I Kovach, Michael W Nachman, Rauri C K Bowie
Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery. Genome biology and evolution (2024)
Megan Ann Supple, Merly Escalona, Jillian Adkins, Michael R Buchalski, Nicolas Alexandre, Ruta M Sahasrabudhe, Oanh H Nguyen, Samuel Sacco, Colin W Fairbairn, Eric Beraut, William Seligmann, Richard E Green, Erin Meredith, Joshua D Kapp
A genome assembly of the American black bear, Ursus americanus, from California. The Journal of heredity 115 (5) (2024)
Whitney L E Tsai, Merly Escalona, Kimball L Garrett, Ryan S Terrill, Ruta M Sahasrabudhe, Oanh H Nguyen, Eric Beraut, William Seligmann, Colin W Fairbairn, Ryan J Harrigan, John E McCormack, Michael E Alfaro, Thomas B Smith, Rachael A Bay
A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia). The Journal of heredity 115 (3) (2024)
Sorel Fitz-Gibbon, Alayna Mead, Scott O'Donnell, Zhi-Zhong Li, Merly Escalona, Eric Beraut, Samuel Sacco, Mohan P A Marimuthu, Oanh Nguyen, Victoria L Sork
Reference genome of California walnut, Juglans californica, and resemblance with other genomes in the order Fagales. The Journal of heredity (2023)
Philip S Ward, Elizabeth I Cash, Kailey Ferger, Merly Escalona, Ruta Sahasrabudhe, Courtney Miller, Erin Toffelmier, Colin Fairbairn, William Seligmann, H Bradley Shaffer, Neil D Tsutsui
Reference genome of the bicolored carpenter ant, Camponotus vicinus. The Journal of heredity (2023)
Samantha L R Capel, Natalie M Hamilton, Devaughn Fraser, Merly Escalona, Oanh Nguyen, Samuel Sacco, Ruta Sahasrabudhe, William Seligmann, Juan M Vazquez, Peter H Sudmant, Michael L Morrison, Robert K Wayne, Michael R Buchalski
Reference genome of Townsend's big-eared bat, Corynorhinus townsendii. The Journal of heredity (2023)
Julia N Adams, Merly Escalona, Mohan P A Marimuthu, Colin W Fairbairn, Eric Beraut, William Seligmann, Oanh H Nguyen, Noravit Chumchim, Jason E Stajich
The reference genome assembly of the bright cobblestone lichen, Acarospora socialis. The Journal of heredity (2023)
Phred M Benham, Carla Cicero, Merly Escalona, Eric Beraut, Mohan P A Marimuthu, Oanh Nguyen, Michael W Nachman, Rauri C K Bowie
A highly contiguous genome assembly for the California quail (Callipepla californica). The Journal of heredity (2023)
Laurie A Hall, Ian J Wang, Merly Escalona, Eric Beraut, Samuel Sacco, Ruta Sahasrabudhe, Oanh Nguyen, Erin Toffelmier, H Bradley Shaffer, Steven R Beissinger
Reference genome of the black rail, Laterallus jamaicensis. The Journal of heredity (2023)
Samridhi Chaturvedi, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Colin W Fairbairn, William Seligmann, Courtney Miller, H Bradley Shaffer, Noah K Whiteman
A draft reference genome assembly of the Pipevine Swallowtail butterfly, Battus philenor hirsuta. The Journal of heredity (2023)
Devon A DeRaad, Merly Escalona, Phred M Benham, Mohan P A Marimuthu, Ruta M Sahasrabudhe, Oanh Nguyen, Noravit Chumchim, Eric Beraut, Colin W Fairbairn, William Seligmann, Rauri C K Bowie, Carla Cicero, John E McCormack, Robert K Wayne
De novo assembly of a chromosome-level reference genome for the California Scrub-Jay, Aphelocoma californica. The Journal of heredity (2023)
Julia Harenčár, Oscar M Vargas, Merly Escalona, Douglas W Schemske, Kathleen M Kay
Genome assemblies and comparison of two neotropical spiral gingers: Costus pulverulentus and C. lasius. The Journal of heredity (2023)
Erin P Westeen, Merly Escalona, Matthew L Holding, Eric Beraut, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Ralph Perri, Robert N Fisher, Erin Toffelmier, H Bradley Shaffer, Ian J Wang
A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex. The Journal of heredity (2023)
Jonathan Q Richmond, Jimmy A McGuire, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Robert N Fisher, Ian J Wang, H B Shaffer
Reference genome of an iconic lizard in western North America, Blainville's horned lizard Phrynosoma blainvillii. The Journal of heredity (2023)
May B Roberts, Darrin T Schultz, Remy Gatins, Merly Escalona, Giacomo Bernardi
Chromosome-level genome of the three-spot damselfish, Dascyllus trimaculatus. G3 (Bethesda, Md.) (2023)
Seira A Adams, Natalie Graham, Anna Holmquist, Monica M Sheffer, Emma C Steigerwald, Ruta Sahasrabudhe, Oanh Nguyen, Eric Beraut, Colin Fairbairn, Samuel Sacco, William Seligmann, Merly Escalona, H Bradley Shaffer, Erin Toffelmier, Rosemary G Gillespie
REFERENCE GENOME OF THE LONG-JAWED ORB-WEAVER, Tetragnatha versicolor (ARANEAE: TETRAGNATHIDAE). The Journal of heredity (2023)
Krzysztof M Kozak, Merly Escalona, Noravit Chumchim, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Ruta Sahasrabudhe, William Seligmann, Chris Conroy, James L Patton, Rauri C K Bowie, Michael W Nachman
A highly contiguous genome assembly for the pocket mouse Perognathus longimembris longimembris. The Journal of heredity (2023)
Laurie A Hall, Ian J Wang, Merly Escalona, Eric Beraut, Samuel Sacco, Ruta Sahasrabudhe, Oanh Nguyen, Erin Toffelmier, H Bradley Shaffer, Steven R Beissinger
Reference genome of the Virginia rail, Rallus limicola. The Journal of heredity (2023)
Phred M Benham, Carla Cicero, Devon A DeRaad, John E McCormack, Robert K Wayne, Merly Escalona, Eric Beraut, Mohan P A Marimuthu, Oanh Nguyen, Michael W Nachman, Rauri C K Bowie
A highly contiguous reference genome for the Steller's jay (Cyanocitta stelleri). The Journal of heredity (2023)
Gregory F Grether, Joscha Beninde, Eric Beraut, Noravit Chumchim, Merly Escalona, Zachary G MacDonald, Courtney Miller, Ruta Sahasrabudhe, Andrew M Shedlock, Erin Toffelmier, H Bradley Shaffer
Reference genome for the American rubyspot damselfly, Hetaerina americana. The Journal of heredity (2023)
Joseph N Curti, Devaughn Fraser, Merly Escalona, Colin W Fairbairn, Samuel Sacco, Ruta Sahasrabudhe, Oanh Nguyen, William Seligmann, Peter H Sudmant, Erin Toffelmier, Juan Manuel Vazquez, Robert Wayne, H Bradley Shaffer, Michael R Buchalski
A genome assembly of the Yuma myotis bat, Myotis yumanensis. The Journal of heredity (2023)
Anusha P Bishop, Erin P Westeen, Michael L Yuan, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Erin Toffelmier, Robert N Fisher, H Bradley Shaffer, Ian J Wang
Assembly of the largest squamate reference genome to date: the western fence lizard, Sceloporus occidentalis. The Journal of heredity (2023)
Erin P Westeen, Merly Escalona, Eric Beraut, Mohan P A Marimuthu, Oanh Nguyen, Robert N Fisher, Erin Toffelmier, H Bradley Shaffer, Ian J Wang
A reference genome assembly for the continentally-distributed ring-necked snake, Diadophis punctatus. The Journal of heredity (2023)
Lisa X Paggeot, Melissa B DeBiasse, Merly Escalona, Colin Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta M Sahasrabudhe, Michael N Dawson
Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer. The Journal of heredity 113 (6) (2022)
Brendan H Cornwell, Eric Beraut, Colin Fairbairn, Oanh H Nguyen, Mohan P A Marimuthu, Merly Escalona, Erin Toffelmier
Reference genome assembly of the sunburst anemone, Anthopleura sola. The Journal of heredity 113 (6) (2022)
Kimberly M Ballare, Merly Escalona, Kelly Barr, William Seligmann, Samuel Sacco, Ruta Madhusudan Sahasrabudhe, Oanh Nguyen, Christy Wyckoff, Thomas B Smith, Joshua D Kapp
A reference genome assembly of the declining tricolored blackbird, Agelaius tricolor. The Journal of heredity (2022)
Daniel B Wright, Merly Escalona, Mohan P A Marimuthu, Ruta Sahasrabudhe, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Courtney Miller, H Bradley Shaffer, Giacomo Bernardi
Reference genome of the Woolly Sculpin, Clinocottus analis. The Journal of heredity (2022)
Melissa B DeBiasse, Lauren Marie Schiebelhut, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Ruta Sahasrabudhe, Michael N Dawson
A chromosome-level reference genome for the giant pink sea star, Pisaster brevispinus, a species severely impacted by wasting. The Journal of heredity 113 (6) (2022)
Dustin A Wood, Jonathan Q Richmond, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Michael Westphal, Robert N Fisher, Amy G Vandergast, Erin Toffelmier, Ian J Wang, H Bradley Shaffer
Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern. The Journal of heredity 113 (6) (2022)
Merly Escalona, Jake VanCampen, Nicholas W Maurer, Marina Haukness, Mariam Okhovat, Robert S Harris, Allison Watwood, Gabrielle A Hartley, Rachel J O'Neill, Paul Medvedev, Kateryna D Makova, Christopher Vollmers, Lucia Carbone, Richard E Green
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). The Journal of heredity (2022)
Giorgio Bernardi, Jason A Toy, Merly Escalona, Mohan P A Marimuthu, Ruta Sahasrabudhe, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Courtney Miller, H Bradley Shaffer
Reference Genome of the Black Surfperch, Embiotoca jacksoni (Embiotocidae, Perciformes), a California Kelp Forest Fish That Lacks a Pelagic Larval Stage. The Journal of heredity 113 (6) (2022)
Giacomo Bernardi, Melissa DeBiasse, Merly Escalona, Mohan P A Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Courtney Miller, Erin Toffelmier, H Bradley Shaffer
Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems. The Journal of heredity 113 (6) (2022)
Shannon Rose Kieran Blair, Joshua Hull, Merly Escalona, Amanda Finger, Shannon E K Joslin, Ruta Sahasrabudhe, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Emily Reister Morris, Samantha Velazquez, Andrea Schreier
The reference genome of the Vernal Pool Tadpole Shrimp, Lepidurus packardi. The Journal of heredity 113 (6) (2022)
Shannon Rose Kieran Blair, Andrea Schreier, Merly Escalona, Amanda J Finger, Shannon E K Joslin, Ruta Sahasrabudhe, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Emily Reister Morris, Hayley Mangelson, Joshua Hull
A draft reference genome of the Vernal Pool Fairy Shrimp, Branchinecta lynchi. The Journal of heredity (2022)
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M D Wood, Alan Tracey, Françoise Thibaud-Nissen, Mitchell R Vollger, David Porubsky, Haoyu Cheng, Mobin Asri, Glennis A Logsdon, Paolo Carnevali, Mark J P Chaisson, Chen-Shan Chin, Sarah Cody, Joanna Collins, Peter Ebert, Merly Escalona, Olivier Fedrigo, Robert S Fulton, Lucinda L Fulton, Shilpa Garg, Jennifer L Gerton, Jay Ghurye, Anastasiya Granat, Richard E Green, William Harvey, Patrick Hasenfeld, Alex Hastie, Marina Haukness, Erich B Jaeger, Miten Jain, Melanie Kirsche, Mikhail Kolmogorov, Jan O Korbel, Sergey Koren, Jonas Korlach, Joyce Lee, Daofeng Li, Tina Lindsay, Julian Lucas, Feng Luo, Tobias Marschall, Matthew W Mitchell, Jennifer McDaniel, Fan Nie, Hugh E Olsen, Nathan D Olson, Trevor Pesout, Tamara Potapova, Daniela Puiu, Allison Regier, Jue Ruan, Steven L Salzberg, Ashley D Sanders, Michael C Schatz, Anthony Schmitt, Valerie A Schneider, Siddarth Selvaraj, Kishwar Shafin, Alaina Shumate, Nathan O Stitziel, Catherine Stober, James Torrance, Justin Wagner, Jian-Xin Wang, Aaron Wenger, Chuan-Le Xiao, Aleksey V Zimin, Guo-Jie Zhang, Ting Wang, Heng Li, Erik Garrison, David Haussler, Ira Hall, Justin M Zook, Evan E Eichler, Adam M Phillippy, Benedict Paten, Kerstin Howe, Karen H Miga, null null
Semi-automated assembly of high-quality diploid human reference genomes. Nature 611 (7936) (2022)
Meixi Lin, Merly Escalona, Ruta Sahasrabudhe, Oanh Nguyen, Eric Beraut, Michael R Buchalski, Robert K Wayne
A Reference Genome Assembly of the Bobcat, Lynx rufus. The Journal of heredity 113 (6) (2022)
Joanna S Griffiths, Ruta M Sahasrabudhe, Mohan P A Marimuthu, Noravit Chumchim, Oanh H Nguyen, Eric Beraut, Merly Escalona, Andrew Whitehead
A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics. The Journal of heredity 113 (6) (2022)
Jesse L Grismer, Merly Escalona, Courtney A Miller, Eric Beraut, Colin W Fairbairn, Mohan P A Marimuthu, Oanh H Nguyen, Erin Toffelmier, Ian J Wang, H Bradley Shaffer
Reference genome of the rubber boa, Charina bottae (Serpentes: Boidae). The Journal of heredity 113 (6) (2022)
Daniel B Wright, Merly Escalona, Mohan P A Marimuthu, Ruta Sahasrabudhe, Oanh Nguyen, Samuel Sacco, Eric Beraut, Erin Toffelmier, Courtney Miller, H Bradley Shaffer, Giacomo Bernardi, Donovan P German
Reference genome of the Monkeyface Prickleback, Cebidichthys violaceus. The Journal of heredity (2022)
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Reference genome of the color polymorphic desert annual plant sandblossoms, Linanthus parryae. The Journal of heredity 113 (6) (2022)
Shannon Rose Kieran Blair, Andrea Schreier, Merly Escalona, Amanda J Finger, Shannon E K Joslin, Ruta Sahasrabudhe, Mohan P A Marimuthu, Oanh Nguyen, Noravit Chumchim, Emily Reister Morris, Hayley Mangelson, Joshua Hull
A chromosome-level reference genome for the Versatile Fairy Shrimp, Branchinecta lindahli. The Journal of heredity (2022)
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Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science (New York, N.Y.) 370 (6523) (2021)